LOC110515765 (LOC106582155)


Basic Information

Item Value
gene id LOC110515765
gene name LOC106582155
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 25837637 ~ 25854424 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021594532.2
TCTTGCAGAGGAACCGAGCGCTGTCCATCCCTATGCGACATCGCACTTCACGTCGTGCACTAGTCCTAACTGGTGATCAGGACGAGATGCTGCTTCCTAAACCACTCCAGATGATTATACCTAAACCGGCGGCTGTATTTAAATGATAACTAAGGGTGTGAATGTTGAGAAAGAACAACATGGGGAAAGGAGTGGCTCTGTTCCTTCTACTGTTGGCACTTCTTCACGAGGCtataggtcagagaagaagaaaaggaaAATACAGTGTCCTCAGAGATGGAGGAAATGACATGACAACATGTTCCATGGAGGTGGCCTTCATTCTGGACAGTTCGGAGAGTGCCAAGACCTTCCTGTTCGAGAAGCAGAAGTCCTTTGTTCTGCATTTCAGCACTCGTCTCACCATGCTCCAGGTGTCTGGATGGACTCTGAAACTGCGGATGGCTGCTCTGCAGTACAGTAGCTCCGTGTCTATAGAGCACAGCTTCACTGCCTGGCAGGACCTGGATGTGTTCCACAGCAGAGTCAGCTCCATGGCCTACATAGGCCATGGCACCTACTCCACCTACGCCATCACCAACGCCACGCAGCTCTTCACCCAGGAGACCAAGGAGGACAGTGTCAGGGTGGAGGTGCTCATGACTGACGGTGCCGATCATCCGAGGAACCCTGATGTGATCGGAGCAGCGGCAGATGCTAAGGCTAGTGGCGTGAAGCTCTTTGCTGTAGGGTTGTCGGACCTGGCCCGCCAGAGCCAGAAAAGTGCCAAACTTCGGGCTATCGCTAGCACACCGGCCCAGCAGTTCGTCCACAGTCTCACTGACCCCCAGCTAGAGGAGAAGTTACTGAAAGAGTTGGGTGCAATAGCGCTTGAGGTGTGTCCACAGGctaaagtgtgtttgtgtgaaagaggggagagaggcccCCCTGGAAACCCAGGTAAAAAAGGAGATCCAGGATATGAAGGACCATCTGGTCCAAAAGGATCAAGGGGAGAACCTGGAGTCAGTGGCCGACCAGGAAGTGACGGTCTTGAGGGCAGTCCTGGTTATAAAGGTGACAAGGGGGAGATAGGAGACTGTGGCACCCCTGGGGAAAAAGGAGATGAAGGCCCTGGAGGACCTCCTGGCCCACGGGGACCCAGAGGAGACCAGGGTGTTAACGGACCACCCGGGGACCAGGGTCCGGAGGGCCAAACAGGACCTAAAGGGGACCAAGGACCCACCGGTGCATCTGGACCAGCAGGTGACATTGGCATTGGGTTCCCAGGTCCAAAGGGGGCCAAAGGAATTCAGGGAAGACCAGGAACCCTTGGTCCCATTGGAATTGGAGAGCCAGGACAGCCAGGACCCCCAGGACTTGCTGGAgcacagggtaaccagggagctGTTGGGGAGGGGCTCCCTGGCCCAAAGGGGGATCGAGGCTACGAGGGCCCCAGAGGTGAGCGTGGTCTCACTGGTGTTGGGGTCAAAGGTGATAAGGGAAATCCTGGACAGCTTGGATCACAAGGACCGGTGGGAATGCCAGGGGCAGGAATTCAAGGAGAAAAGGGGAGCCAAGGGCCAGTTGGCCCTCCAGGCCCCAGAGGGAATCCAGGTGTGGGACTTATGGGCCAAAAGGGAAGCCAAGGCTTCTCAGGTGAGCCTGGAAtcccaggggagagaggagtcGGGGAGCCAGGACCTAAAGGAGACCCAGGATCGGAGGGGTTGCCTGGTATTCCGGGCCTCTCTGGAGAGGATGGAGACATAGGACAGAAGGGTGACATTGGATTACAGGGGCCCAGGGGACCTGATGGGGCACCCGGAAAAGGTGTCCCTGGAGAAAAGGGGGACCGAGGGGAGCGGGGCTCCAGGGGCCAGCTAGGGGCAGTAGGGCCTGTGGGGCCAATGGGGGCCAAGGGTGAACCCGGAAGTGCTGGACGAGCAGGTACAAATGGACCACCTGGGCGGGGATTACCCGGTATCAAGGGGGACCCTGGTGCGGTCGGCCCACCCGGACATGTTGGTGAACGAGGAATAGGAATCACTGGACCGAAGGGTGAGAGAGGGCTACCAGGGCCCATTGGTCCACCTGGGCTTGAAGGGGAAGGCCTCCCTGGAACTCCAGGGCCCCCTGGAATACCAGGACTGACAGGTGAGACTGGACCAGAAGGAAAAGGTTTACCTGGTCCTAAGGGAGACCGGGGAACTCCAGGCCCCACAGGACCAGCTGGAGCACCTGGAGTCGGGCTAATGGGTCCCAAGGGGTCAGCAGGTCAGATTGGAGCACCGGGTCCACAGGGAGTGCCTGGAGAGGGCATTCAAGGACCAAAGGGGGAGTCAGGATTCCAGGGGATCACGGGCCCCAGGGGGCCCCCAGGACAGGGTATTCAAGGGGATAAGggagacagggggtTCGTGGGTGAACGAGGCAGAaagggggacaggggagagactggagagagaggagctgctggACCTTTGGGCAGACTGGGAGAAAAAGGGGAACCTGGCCTAACAagagaggaggtcatCAAACTGGTCAGATCTATATGTGGTTGTGGGGTGAAGTGCCGTGAGAGCCCACTGGAGATGGTCTTTGTGATTGACAGCTCAGAGAGCGTTGGCCCCGACAACTTCAACGTGGTCAAGGACTTTGTGAACGCTCTGGTCGACCGCGCCTCCGTGAGCCGGGAGACCACTCACGTCGGGGTGGTCCTCTACAGCCACATCAACATGGTGGTGGTCAGTCTGCACCAGCAGGCCAGCCGGGACCAGGTGAAGGCGGCGGTCCGCACTATGACCTACCTGGGCGAAGGCACCTTTACGGGCAGCGCCATCCATCAGGCCAACCAGGTGTTCCGGGCGGCCAGGCCCGGGGTGAGGAAAGTGGCCATAGTGATCACAGATGGACAGGCGGACGAGAGGGACACTGTGAGGCTGGAGGAGGCGGTGAAAGAGGCCAATGGCAGTAACATTGAGATGTTTGTCATCGGGGTGGTGAACGAGAGTGATCCGCTGTACGAGGAGTTTAAGAAAGAGCTCCACCTCATGGCCTCTGACCCAGACAGGGAACACGTGTATCTGATTGATGACTTCAGGACACTTCCTGCCCTTGAGAGCAAGCTGCTGAGTCGGATCTGTGAGAGTGATGGTGGGGCCCAGTtcagctccatccccagctccaGATACTCCCCCGGAACCCCTGGACAAGCTGGGATTGTCAGGGAAACCCCAGAGAGGACTGATACCGACACGCCCACTTTCAATGGAGACTTCAAGAAAACACAGATGGTGCCAGGTCCACCAGGAGAGTCAGACAGAGTCTTTACCCCAACGGGCCCCGAGACCGGGGACCGAGATAACTCGGAGACCTACAGGGTCCCATCCTTTGACAGGGAACCCTTCAAGCGCCTACCAGAGTTCCTTCTTCCGTCAGAGGTGAAGAACCCCACCCACGGTGTGGTCATGACTGGCCCCCAGGCCCCCACCCAGATGCCCCTTCCCGTAGTAAAGCTACCCAGGCTCCCCCCAACCTCTCCACCTCTGCCCCAGGATGCTTTAATACCAGATGAGAGCTGTGGACAGATTCTGGACCCCGGGCCTTGCAGGAATTATGTTGTGAAGTGGTACTATGACACTACGGCTAACGCCTGTGCCCAGTTCTGGTTTGGAGGTTGTCAGGGAAACCAAAACCAGTTTGAGTCGGAGAAGAGCTGCAAAAAAACCTGTGTGAAGGTCTAACAAACACGTTTGTTGACTTGTTTTGAATGCTTACAAATCTACTTGATTGTATTGATGAGACAGATGATATATTTGTGTCAAAGGTGGGTCAATTTCAATATCAGTGCCTTATCTCTTCACCAATACTTTGACATGGGGATAGAAAACTTGTCAAAGAGAGGACTAGGTCATTTTAGGACCAAATGTTCAATCACAATTATTTTGGATTCGTATTCTCTCGTCTTGGAACTGGTGGTGGTAACATGACACCATTTCAATTTAACTTGAATTAAATCGAATTAATCCCCTCAGGGGAAATAAGCTATTTACATAACTCTGTATAAATGTGTGTCCTTGGTTTAACATACCTCCAAGAAATGAGGGAGCTTAACTGTAAGTGAATGAGTCTTAGGGCTTTTGGAAGAAGTATACAGTGAGggaaccattccatttattcatCTTCAAGATGGAGCAATAAGGGCAGTGCGAACCGTATTGGTTTCCAGAAACACTGTTGAACACTAAATAGTAATGTTACAAACGTGGCAGAAGGTCTTTACACTAACCTTTATCCCTGATTAACTTTTCTATAAGTAACTCATTTGTATGAAAACTGACTGCTGGATACTAGTTTATAATACTGCACACCTTCATTAAAGTTAATTAAATGAACCAAGAGAATGTTGTTAATTTGAACATCCAGATATATTTTCACATTTTCAGAAATATTACACTGTTTAATGCATTCGTGTCTGTGGTGGCAAATGTAACCAACCCCCACTCCTCTAACCTTTGCAGGTAAACCGTTCAAAAAGAGATACTTGAATAATTGAAGGATCAGAGAGTGGTTGATCTTGCGTCAGGAAAAGCGTCTTGTCGTCACCTGAAAG

Function

NR:

description
collagen alpha-1(XXVIII) chain-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021594532.2 True 4597 mRNA 0.54 36 25837637 25854424

Neighbor

gene id symbol gene type direction distance location
LOC110515750 LOC106582146 coding downstream 12529 25822812 ~ 25825108 (-)
LOC110515676 LOC106582133 coding downstream 26989 25800237 ~ 25810648 (-)
LOC110515569 LOC106605268 coding downstream 194139 25596704 ~ 25643498 (-)
LOC110503974 NA coding downstream 248213 25583941 ~ 25589424 (-)
LOC110515528 LOC106582056 coding downstream 261830 25568039 ~ 25575807 (-)
ica1 LOC106582178 coding upstream 29394 25883818 ~ 25895863 (-)
LOC110515870 LOC106584533 coding upstream 57283 25911707 ~ 25918481 (-)
LOC110515882 LOC106582184 coding upstream 64491 25918915 ~ 26024557 (-)
LOC110515898 LOC106582196 coding upstream 216632 26071056 ~ 26094219 (-)
LOC110515941 etv1 coding upstream 313044 26167468 ~ 26186034 (-)
G239480 pngf non-coding downstream 3397 25832012 ~ 25834240 (-)
G239402 NA non-coding downstream 24450 25811205 ~ 25813187 (-)
G239138 NA non-coding downstream 246087 25591351 ~ 25591550 (-)
G239133 NA non-coding downstream 258942 25577220 ~ 25578695 (-)
G239502 NA non-coding upstream 20387 25874811 ~ 25875963 (-)
G239504 NA non-coding upstream 44394 25898818 ~ 25899130 (-)
G239519 NA non-coding upstream 81799 25936223 ~ 25936711 (-)
G239515 NA non-coding upstream 201151 26055575 ~ 26057001 (-)
LOC110515384 LOC106582009 other downstream 601270 25171287 ~ 25236536 (-)
LOC110515208 LOC106581894 other downstream 871429 24936516 ~ 25052970 (-)
LOC110515154 LOC106605289 other downstream 1067314 24767049 ~ 24799511 (-)
G237832 NA other downstream 1316093 24521219 ~ 24521544 (-)
G240409 NA other upstream 714677 26569101 ~ 26569522 (-)
G240464 NA other upstream 820168 26674592 ~ 26675033 (-)
LOC110516631 LOC106582601 other upstream 1216631 27070914 ~ 27097259 (-)
LOC110516667 LOC106582624 other upstream 1257758 27111084 ~ 27127488 (-)
LOC110516678 LOC106605187 other upstream 1301144 27154680 ~ 27159987 (-)

Expression


Co-expression Network