ica1 (LOC106582178)


Basic Information

Item Value
gene id ica1
gene name LOC106582178
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 25883818 ~ 25895863 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036973359.1
GACGTCATCGACCATTCTGCGCAAGGATTGTATTCAACAGAATGAGCAGCTGGTTACGctgtgtagcctacagtcaaTAATAGTAGAATACATGTATGTACGTTGTCTATAGCTGGATGGTAGGCTATCAACACAGCAAGTAACAAGACTTTGACCGTTTCGGATGTCATTGCAGCGGTGGCTACTCCCGGGAGTATTTTGACCGCTTTATTGAAAGCCAAGACTCATCTGTTGTGAACAAGTTCCAGCAAAAGTACTGGAAAACCAAACAGAAGATCATCAAGGTCACGGGAAAGAAAGAGGACGAACATGTCGTGGCGTCAGACGCAGACCTGGATGGCAAACTGGAGGTGTTTCACTCTGTCCAGAGAACGTGCATGGAGCTATTGAAGGTGATCGAGCAGTACCAGAGAAGAATCTGCTTTCTATCCCAGGAGGAGAATGAGTTGGGGCGGTTCCTGCGCTCACAGGGCTCCCAGGACCGGACCAGGGCTGGGAAGATCATGCAGGCTACCGGGAAGGCCCTCTGCTTCTCCTCCCAGCAGAGGCTGTCTCTGCGTAGTCCTTTGTCTCGCCTCTACCAGGAGGTGGAGACTTTCCGATACCGGGCCATCTCTGACACCTGGCTGACGGTGAACCGCATGGAACAGTCCAGGACGGAATACCGTGGAGCACTGCTCTGGATGAAGGATGTATCCCAGGAGCTCGatccagacacacacaaacagatggaGAAATTCCGCAAGGTTCAAGTGCAGGTGCGAACCACTAAAACAAGCTTTGACAAACTGAAGAATGATGTCTGCCAAAAAGTCGATTTATTAGGAGCCAGCCGCTGCAATCTGCTTTCTCATGTTTTAACCACATACCAGACCACCCTGTTGCACTTCTGGGAGAAGACGTCTCACACTATGGCTGCCATTCATGAGAGCTTTAAGGGCTGCCAGCATTTTGAGTTCTCTACAATCAAGAGCCTCCAAGACCCCATGGATAAACTGTCATCTCAGGGATcgaagaaaaagagggagaagaaagTCAAAACAAAGACAGATCTTGAGGACACTGCAGATGGCCAACTTATCTCAATAGATCCCAATGAAGAGTCCAATGAAGAAGCTCAAACCAAGACACCTTCTGGACAATTCTTTGAAGACATCGACCTTAATAGACAAATGACAGGGCCTGAGGATCTTCTCTCAGCCTTCTCTCGTCAGGAGCAGGAGGAGGGTGGTGAGAGGGACAGCATGGCCTTATTGAATGAGATTCTGGGCAGCACGTCTCTGGATGAGGGCGAGTTCTCACAGGAGTGGCAGGAGGTGTTTGGTAAGGGGGACCAGGGGAGCGGAGCCACTAGTAGAGGGGGCCTAGTGGAACCCCAGCAGGAGGAAGactcctccatcttcctcccaTCTCACCTCCTGGACCAGAACAGGAACAACCTCCAATCTTCTCtctcagATTGGGCCACGAGCATTCCACAGCCCATCTCCCAGGCAACAGCGCAATCATCTGGAGCCAATCAGAACCCCTCTAGGCCAGCAGCAGTGAGAGAGACTTCAGAGACCGCCAAAGACCTCTCAGCCTGGTTCAACCTGTTCGCCGACTTGGACCCTCTGTCGAACCCAGATGCAGTAGGCAGGAGTGGGCAGGAGCATGAGCTTCACAACGCATAGACCTGCGACCTGATTCACATCCAGGGCAAGCTCCTACGCTATAAGTTAGCATAATGCACAACAAGGTCATGGTTATTTTGCTGTTAACATCTGTTCTAGGGTCATCTCTTTCTCAACCCCCGACCTACTCCTTACCATTGAGTTAAACAACAATTTTACCCTGGACCAGCTGTTAGAGGCATTTACTGTACAAGTATTCAATGGTATCAATCAATTGAGCTTGAAATCATGAATTCCAAAAgaaaacaaatgttatttgtgtctgtttaacatgatttattAATGTTTATAAGTTAAGTTGTCAGAGCGGGTAGATGCTTTCAACAACCAAAGGATGTACGAAGGATTCATGATTAGCTTTTTCAGAATTATTGCCTTGTCATTTGGGTATACCTGTAAGCTTTCTGGTGGTGACAATGATGAGGCCTTTACACCCATCTCAACAATAGGAAAATCAGTATACAGTATGAAAGGGTAAAATATGTATCAGTTTTGTCTGATCGATCATACATTTATTGCATGTTTTGTGTATTCCTTATTTAGTTGTGTGGTTGTACTCACGATATGTTACTGTTGACAATAACATAtctaacatttgatttgttttagaTACACTCTTTAGGGCCTGGAATATATTCAAGGTGTGTTATAGAGCAGCGCACTAGACAGCTGACAATGCACCTTTTTAAAAGGCATTTTCTCAGACGTTTGTGGAAATTCTATTCATGGTAACCACTGCACATGTCGGCTCCAGCGTAAAGGACCTTAGTCTGTTCTATAACACGCCTCAGATTGCATCCCAGCCTAGGTGTACATTTATTAACTAGCTGCACTTTCAAGTACACAATCTGTATTCTATTGCTTGGAGAGCAACCTATGGACGAGTGGGAAATGTGCATAACACACATTCTAACCTGCATAAAATACATATGTTGTAATTGGTGACTGGTTTTAAGCTTGTAATCAAAATGATTAGAATTATATTTTAATTGTGGAGTGCTGAAAAGTGTGCATTTTGATTGTCTGTAAAAATGTGCTAAATGAGACTAACTTATTAGAATTAAACTATTGCCATTGTTTACATTAAAAGCCTTGTTTATTCCTGTTATCTTA
>XM_036973358.1
CATGACGTCATCGACCATTCTGCGCAAGGATTGTATTCAACAGAATGAGCAGCTGGTTACGctgtgtagcctacagtcaaTAATAGTAGAATACATGTATGTACGTTGTCTATAGCTGGATGGTAGGCTATCAACACAGCAAGgtcgttgctgcaaatgagaatgtattCTCgggtcaacttacAACCTGACAAAATGGAGAGGGGAAATTACGGTGGCTACTCCCGGGAGTATTTTGACCGCTTTATTGAAAGCCAAGACTCATCTGTTGTGAACAAGTTCCAGCAAAAGTACTGGAAAACCAAACAGAAGATCATCAAGGTCACGGGAAAGAAAGAGGACGAACATGTCGTGGCGTCAGACGCAGACCTGGATGGCAAACTGGAGGTGTTTCACTCTGTCCAGAGAACGTGCATGGAGCTATTGAAGGTGATCGAGCAGTACCAGAGAAGAATCTGCTTTCTATCCCAGGAGGAGAATGAGTTGGGGCGGTTCCTGCGCTCACAGGGCTCCCAGGACCGGACCAGGGCTGGGAAGATCATGCAGGCTACCGGGAAGGCCCTCTGCTTCTCCTCCCAGCAGAGGCTGTCTCTGCGTAGTCCTTTGTCTCGCCTCTACCAGGAGGTGGAGACTTTCCGATACCGGGCCATCTCTGACACCTGGCTGACGGTGAACCGCATGGAACAGTCCAGGACGGAATACCGTGGAGCACTGCTCTGGATGAAGGATGTATCCCAGGAGCTCGatccagacacacacaaacagatggaGAAATTCCGCAAGGTTCAAGTGCAGGTGCGAACCACTAAAACAAGCTTTGACAAACTGAAGAATGATGTCTGCCAAAAAGTCGATTTATTAGGAGCCAGCCGCTGCAATCTGCTTTCTCATGTTTTAACCACATACCAGACCACCCTGTTGCACTTCTGGGAGAAGACGTCTCACACTATGGCTGCCATTCATGAGAGCTTTAAGGGCTGCCAGCATTTTGAGTTCTCTACAATCAAGAGCCTCCAAGACCCCATGGATAAACTGTCATCTCAGGGATcgaagaaaaagagggagaagaaagTCAAAACAAAGACAGATCTTGAGGACACTGCAGATGGCCAACTTATCTCAATAGATCCCAATGAAGAGTCCAATGAAGAAGCTCAAACCAAGACACCTTCTGGACAATTCTTTGAAGACATCGACCTTAATAGACAAATGACAGGGCCTGAGGATCTTCTCTCAGCCTTCTCTCGTCAGGAGCAGGAGGAGGGTGGTGAGAGGGACAGCATGGCCTTATTGAATGAGATTCTGGGCAGCACGTCTCTGGATGAGGGCGAGTTCTCACAGGAGTGGCAGGAGGTGTTTGGTAAGGGGGACCAGGGGAGCGGAGCCACTAGTAGAGGGGGCCTAGTGGAACCCCAGCAGGAGGAAGactcctccatcttcctcccaTCTCACCTCCTGGACCAGAACAGGAACAACCTCCAATCTTCTCtctcagATTGGGCCACGAGCATTCCACAGCCCATCTCCCAGGCAACAGCGCAATCATCTGGAGCCAATCAGAACCCCTCTAGGCCAGCAGCAGTGAGAGAGACTTCAGAGACCGCCAAAGACCTCTCAGCCTGGTTCAACCTGTTCGCCGACTTGGACCCTCTGTCGAACCCAGATGCAGTAGGCAGGAGTGGGCAGGAGCATGAGCTTCACAACGCATAGACCTGCGACCTGATTCACATCCAGGGCAAGCTCCTACGCTATAAGTTAGCATAATGCACAACAAGGTCATGGTTATTTTGCTGTTAACATCTGTTCTAGGGTCATCTCTTTCTCAACCCCCGACCTACTCCTTACCATTGAGTTAAACAACAATTTTACCCTGGACCAGCTGTTAGAGGCATTTACTGTACAAGTATTCAATGGTATCAATCAATTGAGCTTGAAATCATGAATTCCAAAAgaaaacaaatgttatttgtgtctgtttaacatgatttattAATGTTTATAAGTTAAGTTGTCAGAGCGGGTAGATGCTTTCAACAACCAAAGGATGTACGAAGGATTCATGATTAGCTTTTTCAGAATTATTGCCTTGTCATTTGGGTATACCTGTAAGCTTTCTGGTGGTGACAATGATGAGGCCTTTACACCCATCTCAACAATAGGAAAATCAGTATACAGTATGAAAGGGTAAAATATGTATCAGTTTTGTCTGATCGATCATACATTTATTGCATGTTTTGTGTATTCCTTATTTAGTTGTGTGGTTGTACTCACGATATGTTACTGTTGACAATAACATAtctaacatttgatttgttttagaTACACTCTTTAGGGCCTGGAATATATTCAAGGTGTGTTATAGAGCAGCGCACTAGACAGCTGACAATGCACCTTTTTAAAAGGCATTTTCTCAGACGTTTGTGGAAATTCTATTCATGGTAACCACTGCACATGTCGGCTCCAGCGTAAAGGACCTTAGTCTGTTCTATAACACGCCTCAGATTGCATCCCAGCCTAGGTGTACATTTATTAACTAGCTGCACTTTCAAGTACACAATCTGTATTCTATTGCTTGGAGAGCAACCTATGGACGAGTGGGAAATGTGCATAACACACATTCTAACCTGCATAAAATACATATGTTGTAATTGGTGACTGGTTTTAAGCTTGTAATCAAAATGATTAGAATTATATTTTAATTGTGGAGTGCTGAAAAGTGTGCATTTTGATTGTCTGTAAAAATGTGCTAAATGAGACTAACTTATTAGAATTAAACTATTGCCATTGTTTACATTAAAAGCCTTGTTTATTCCTGTTATCTTA
>XM_021594577.2
TTGTTACATGACGTCATCGACCATTCTGCGCAAGGATTGTATTCAACAGAATGAGCAGCTGGTTACGctgtgtagcctacagtcaaTAATAGTAGAATACATGTATGTACGTTGTCTATAGCTGGATGGTAGGCTATCAACACAGCAAGGTAACCTGACAAAATGGAGAGGGGAAATTACGGTGGCTACTCCCGGGAGTATTTTGACCGCTTTATTGAAAGCCAAGACTCATCTGTTGTGAACAAGTTCCAGCAAAAGTACTGGAAAACCAAACAGAAGATCATCAAGGTCACGGGAAAGAAAGAGGACGAACATGTCGTGGCGTCAGACGCAGACCTGGATGGCAAACTGGAGGTGTTTCACTCTGTCCAGAGAACGTGCATGGAGCTATTGAAGGTGATCGAGCAGTACCAGAGAAGAATCTGCTTTCTATCCCAGGAGGAGAATGAGTTGGGGCGGTTCCTGCGCTCACAGGGCTCCCAGGACCGGACCAGGGCTGGGAAGATCATGCAGGCTACCGGGAAGGCCCTCTGCTTCTCCTCCCAGCAGAGGCTGTCTCTGCGTAGTCCTTTGTCTCGCCTCTACCAGGAGGTGGAGACTTTCCGATACCGGGCCATCTCTGACACCTGGCTGACGGTGAACCGCATGGAACAGTCCAGGACGGAATACCGTGGAGCACTGCTCTGGATGAAGGATGTATCCCAGGAGCTCGatccagacacacacaaacagatggaGAAATTCCGCAAGGTTCAAGTGCAGGTGCGAACCACTAAAACAAGCTTTGACAAACTGAAGAATGATGTCTGCCAAAAAGTCGATTTATTAGGAGCCAGCCGCTGCAATCTGCTTTCTCATGTTTTAACCACATACCAGACCACCCTGTTGCACTTCTGGGAGAAGACGTCTCACACTATGGCTGCCATTCATGAGAGCTTTAAGGGCTGCCAGCATTTTGAGTTCTCTACAATCAAGAGCCTCCAAGACCCCATGGATAAACTGTCATCTCAGGGATcgaagaaaaagagggagaagaaagTCAAAACAAAGACAGATCTTGAGGACACTGCAGATGGCCAACTTATCTCAATAGATCCCAATGAAGAGTCCAATGAAGAAGCTCAAACCAAGACACCTTCTGGACAATTCTTTGAAGACATCGACCTTAATAGACAAATGACAGGGCCTGAGGATCTTCTCTCAGCCTTCTCTCGTCAGGAGCAGGAGGAGGGTGGTGAGAGGGACAGCATGGCCTTATTGAATGAGATTCTGGGCAGCACGTCTCTGGATGAGGGCGAGTTCTCACAGGAGTGGCAGGAGGTGTTTGGTAAGGGGGACCAGGGGAGCGGAGCCACTAGTAGAGGGGGCCTAGTGGAACCCCAGCAGGAGGAAGactcctccatcttcctcccaTCTCACCTCCTGGACCAGAACAGGAACAACCTCCAATCTTCTCtctcagATTGGGCCACGAGCATTCCACAGCCCATCTCCCAGGCAACAGCGCAATCATCTGGAGCCAATCAGAACCCCTCTAGGCCAGCAGCAGTGAGAGAGACTTCAGAGACCGCCAAAGACCTCTCAGCCTGGTTCAACCTGTTCGCCGACTTGGACCCTCTGTCGAACCCAGATGCAGTAGGCAGGAGTGGGCAGGAGCATGAGCTTCACAACGCATAGACCTGCGACCTGATTCACATCCAGGGCAAGCTCCTACGCTATAAGTTAGCATAATGCACAACAAGGTCATGGTTATTTTGCTGTTAACATCTGTTCTAGGGTCATCTCTTTCTCAACCCCCGACCTACTCCTTACCATTGAGTTAAACAACAATTTTACCCTGGACCAGCTGTTAGAGGCATTTACTGTACAAGTATTCAATGGTATCAATCAATTGAGCTTGAAATCATGAATTCCAAAAgaaaacaaatgttatttgtgtctgtttaacatgatttattAATGTTTATAAGTTAAGTTGTCAGAGCGGGTAGATGCTTTCAACAACCAAAGGATGTACGAAGGATTCATGATTAGCTTTTTCAGAATTATTGCCTTGTCATTTGGGTATACCTGTAAGCTTTCTGGTGGTGACAATGATGAGGCCTTTACACCCATCTCAACAATAGGAAAATCAGTATACAGTATGAAAGGGTAAAATATGTATCAGTTTTGTCTGATCGATCATACATTTATTGCATGTTTTGTGTATTCCTTATTTAGTTGTGTGGTTGTACTCACGATATGTTACTGTTGACAATAACATAtctaacatttgatttgttttagaTACACTCTTTAGGGCCTGGAATATATTCAAGGTGTGTTATAGAGCAGCGCACTAGACAGCTGACAATGCACCTTTTTAAAAGGCATTTTCTCAGACGTTTGTGGAAATTCTATTCATGGTAACCACTGCACATGTCGGCTCCAGCGTAAAGGACCTTAGTCTGTTCTATAACACGCCTCAGATTGCATCCCAGCCTAGGTGTACATTTATTAACTAGCTGCACTTTCAAGTACACAATCTGTATTCTATTGCTTGGAGAGCAACCTATGGACGAGTGGGAAATGTGCATAACACACATTCTAACCTGCATAAAATACATATGTTGTAATTGGTGACTGGTTTTAAGCTTGTAATCAAAATGATTAGAATTATATTTTAATTGTGGAGTGCTGAAAAGTGTGCATTTTGATTGTCTGTAAAAATGTGCTAAATGAGACTAACTTATTAGAATTAAACTATTGCCATTGTTTACATTAAAAGCCTTGTTTATTCCTGTTATCTTA

Function

NR:

description
islet cell autoantigen 1-like

GO:

id name namespace
GO:0019904 protein domain specific binding molecular_function

KEGG:

id description
K19863 ICA1; islet cell auto antigen 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036973359.1 False 2786 mRNA 0.45 13 25883818 25895854
XM_036973358.1 False 2823 mRNA 0.45 15 25883818 25895857
XM_021594577.2 True 2790 mRNA 0.45 14 25883818 25895863

Neighbor

gene id symbol gene type direction distance location
LOC110515765 LOC106582155 coding downstream 29394 25837637 ~ 25854424 (-)
LOC110515750 LOC106582146 coding downstream 58710 25822812 ~ 25825108 (-)
LOC110515676 LOC106582133 coding downstream 73170 25800237 ~ 25810648 (-)
LOC110515569 LOC106605268 coding downstream 240320 25596704 ~ 25643498 (-)
LOC110503974 NA coding downstream 294394 25583941 ~ 25589424 (-)
LOC110515870 LOC106584533 coding upstream 15844 25911707 ~ 25918481 (-)
LOC110515882 LOC106582184 coding upstream 23052 25918915 ~ 26024557 (-)
LOC110515898 LOC106582196 coding upstream 175193 26071056 ~ 26094219 (-)
LOC110515941 etv1 coding upstream 271605 26167468 ~ 26186034 (-)
LOC110515948 LOC106582257 coding upstream 293059 26188922 ~ 26252950 (-)
G239502 NA non-coding downstream 7855 25874811 ~ 25875963 (-)
G239480 pngf non-coding downstream 49578 25832012 ~ 25834240 (-)
G239402 NA non-coding downstream 70631 25811205 ~ 25813187 (-)
G239138 NA non-coding downstream 292268 25591351 ~ 25591550 (-)
G239504 NA non-coding upstream 2955 25898818 ~ 25899130 (-)
G239519 NA non-coding upstream 40360 25936223 ~ 25936711 (-)
G239515 NA non-coding upstream 159712 26055575 ~ 26057001 (-)
G239822 NA non-coding upstream 230020 26125883 ~ 26126134 (-)
LOC110515384 LOC106582009 other downstream 647451 25171287 ~ 25236536 (-)
LOC110515208 LOC106581894 other downstream 917610 24936516 ~ 25052970 (-)
LOC110515154 LOC106605289 other downstream 1113495 24767049 ~ 24799511 (-)
G237832 NA other downstream 1362274 24521219 ~ 24521544 (-)
G240409 NA other upstream 673238 26569101 ~ 26569522 (-)
G240464 NA other upstream 778729 26674592 ~ 26675033 (-)
LOC110516631 LOC106582601 other upstream 1175192 27070914 ~ 27097259 (-)
LOC110516667 LOC106582624 other upstream 1216319 27111084 ~ 27127488 (-)
LOC110516678 LOC106605187 other upstream 1259705 27154680 ~ 27159987 (-)

Expression


Co-expression Network