LOC110515870 (LOC106584533)


Basic Information

Item Value
gene id LOC110515870
gene name LOC106584533
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 25911707 ~ 25918481 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021594587.2
tctctctctttgcctctttctctcttctctttctctcgctctataAAACATCACATCACACTGACAATCAGACCTACAAGCACTACCATTCACGCAACACCGCCACTAATCCTACCACAAAGAACGTATCATTCATATCTTCCAATAGACAAAACATAGACAGAGCATTTGATTTTCAGCCCTCAGTCAATCTGAAGATTGATCCCTGCTATTTGCTCCAGGGTCTTTTTCATGTTTCCTTTTGTCATTTGTCTCTAGTTGTGGCATTTTTACCTAGTCAATTCCATTTTTTTTCAAGAAAGGGTTTTGCGTATAGGTTGGCATGAAAAGTGAAGGACTACCAAGAGGAATGAAGTCCACATGTTGGTGCATTGTTCTCCTGTCACTCATTTCTATGGTTACAAGTGCCCATTCATCTGCATCTGGAAGTTCAGACGTTCTAAAGTCAGAGAGACCAAAGTCAAGAGCTAAGGACCTCTGGACAACAGACACCAGCAAGGACTTATCCATCAGTCATCTGCTCTCCCAGACCTTTTATGACAAGAATCTGTCTGGCCTGGATCTGAACTATGACAAGTTGGAACCGTACTCTAAACAGGAGCTCTGGGACTGGCTCCACAACACCTCTAGCCTTCATGACCCCCGCTCCCGATCCAAGAGGAGACCCATCGTCAAGACAGGAAAGTTCAAGAAGATGTTCGGCTGGGGCGACTTCCACTCCAACATCAAGACAGTGAAGCTCAACCTGCTGATCACCGGGAAGATTGTAGACCACGGCAACGGCACGTTCAGCGTCTACTTCCGCCACAACGCTACGGGCCAGGGCAACGTGTCGGTGGGGCTGGTGCCGCCCACCAAGGCCGTGGAGTTCCAGCTGCAGCAGTCGACGGTCCTCGAGCCCAAAGACACCAAGCTGTTCAACTGCAGGGTGGAGTACGAGAAGGTGGAGAAGGGCACCAGGAAGTCGCTGTGTTCCCACGACCCCTCGCAGAGCTGCCCTCAGGAGCAGACCCAGAGCCATGTGTCCTGGCTGTGCTCCAAGCCCTTCAAAGTCATCTGCATCTACATCTCCTTCTACAGCACCGACTACAAGCTGGTGCAGAAAGTGTGTCCGGATTACAACTACCACAGCGATACTCCCTACCTCCCCACCGGGTGATTGGCTGAGCGGCTAAGGGaaaggaacagagacagacagggcatTCGCTCCTGAGAGGTGTCAGTTGATTTGAGCTAGGCTAGCACGGCCCTCAATAGAACAGAGGGGGATGCTTTACTGTCGGAACGGAACTGTTAAAACGTATTATTAAAGCCAATGAATCCCTGCTGCTTGTGAGATCGCAACACTGAGCAGACCTTCCCTATGGCCATTGTAAGAGCAATTAGTACGCAACATTTCCTGGCTTGGCATACTTTTTACTCATGTATTTTGACCCTCTGCAGTAGCTATAAGAAAGTGCTCAGCCGGAGCCTTCTCTGAAGATTTGTCATTTATGTAAATAATAACTGATGAAGCCCACTTTATTCTATTAGAAACCGTTTCGATCTTCTAATTGTGTGTTGATGGAATAGCATTTTGaattttccttctctctcactctccatttcTGTTTGTCGCTGGTGATTACAAAGCGGAAATGAAGTAGGTAGATGCCGACTTACTGCGAAGGAAAGTGTCAGAACGCATTAAGACGTGCCATCTATTTCATTACGTGTTTGTATCTGAATGACAGCCAGAAATACAGATCCTTTCAGAATTGTTTCTTTTTCAGTCTCAGTGAATTATTAAAACATCAACATGGGGACAACACACACTAAACAGCAGGCATCTAGAATCTAGGCTACATTAACACTGAGTACAcctaacattaggaacaccttcataatattgaTTTGCGCCCCCTTTTgcgctcagaacagcctcaattcttcagggtctggactccacaaggtgtcaacCCGTTCCACAGgtatgctggccaatgttgactccaatgcttcccataattgtgtcaagttggc

Function

NR:

description
neurexophilin-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021594587.2 True 2022 mRNA 0.47 2 25911707 25918481

Neighbor

gene id symbol gene type direction distance location
ica1 LOC106582178 coding downstream 15844 25883818 ~ 25895863 (-)
LOC110515765 LOC106582155 coding downstream 57283 25837637 ~ 25854424 (-)
LOC110515750 LOC106582146 coding downstream 86599 25822812 ~ 25825108 (-)
LOC110515676 LOC106582133 coding downstream 101059 25800237 ~ 25810648 (-)
LOC110515569 LOC106605268 coding downstream 268209 25596704 ~ 25643498 (-)
LOC110515882 LOC106582184 coding upstream 434 25918915 ~ 26024557 (-)
LOC110515898 LOC106582196 coding upstream 152575 26071056 ~ 26094219 (-)
LOC110515941 etv1 coding upstream 248987 26167468 ~ 26186034 (-)
LOC110515948 LOC106582257 coding upstream 270441 26188922 ~ 26252950 (-)
LOC110515972 LOC106582276 coding upstream 357281 26275762 ~ 26316108 (-)
G239504 NA non-coding downstream 12577 25898818 ~ 25899130 (-)
G239502 NA non-coding downstream 35744 25874811 ~ 25875963 (-)
G239480 pngf non-coding downstream 77467 25832012 ~ 25834240 (-)
G239402 NA non-coding downstream 98520 25811205 ~ 25813187 (-)
G239519 NA non-coding upstream 17742 25936223 ~ 25936711 (-)
G239515 NA non-coding upstream 137094 26055575 ~ 26057001 (-)
G239822 NA non-coding upstream 207402 26125883 ~ 26126134 (-)
G239836 NA non-coding upstream 227739 26146220 ~ 26146503 (-)
LOC110515384 LOC106582009 other downstream 675340 25171287 ~ 25236536 (-)
LOC110515208 LOC106581894 other downstream 945499 24936516 ~ 25052970 (-)
LOC110515154 LOC106605289 other downstream 1141384 24767049 ~ 24799511 (-)
G237832 NA other downstream 1390163 24521219 ~ 24521544 (-)
G240409 NA other upstream 650620 26569101 ~ 26569522 (-)
G240464 NA other upstream 756111 26674592 ~ 26675033 (-)
LOC110516631 LOC106582601 other upstream 1152574 27070914 ~ 27097259 (-)
LOC110516667 LOC106582624 other upstream 1193701 27111084 ~ 27127488 (-)
LOC110516678 LOC106605187 other upstream 1237087 27154680 ~ 27159987 (-)

Expression


Co-expression Network