LOC110515882 (LOC106582184)


Basic Information

Item Value
gene id LOC110515882
gene name LOC106582184
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 25918915 ~ 26024557 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036973360.1
CTCCAGCTGTCCTCTCAGCACTGCTAGCGAGGAGAAGACGCTTCCGTCCCTGTACCCTCGGCAAGAGAGGGACTGTGTGTGTAAAAAAGAGAGGGAGCTGGAgcatggagagacagaaagagagagagtgagtgaaagagagcgagagagagagagggagagagagagagagcgtgtgagagaggggaaaggagggaggaagggaggaggtacCACTGCAGACGCACAGCCACTGTCACAGCTCCACAGCCATCGGACAGAGGCAGAAACGGCAGCACCAAAGAGCATGGAGGAGCAAGACTCTATCATTCCTCTGgacctctaccctctctcactGACAACCTTCCTCTGGGAATACCCTGTGAagagtggagaagagaagagaagaggagggagatagaggacaAGAGGAGTAATCTCTTGATCTGCCCTTCAGGAGAGGAAGCACCAGTCCCTTACTCTAGTGGGACAAATCACACACTATTCTTTTTTTTTGGCCTGTCAGACCTGTGTACGTCTTGGGTTATCTTCCCCTGCGGTGACCTTTTGACAGTGTGGACTTACGTTGACCCTGGAGAGGACCATGGGGctagggtggaggtggaggggtgcaGGAGGGACCCCCAGTATAAGGACAGGGGGCAGCACATTCCTGTGGGTGACAGTACTACTGCACTGTGGTACTTGGAGGGCTAACACACAGATGGTAGAGGACACCAAGTCTGTGTACTTCTGGGAAACAGGGCCATGGGGCAGATGTATGGGCAGTGACTGTGGTCCAGGTGGCAGCCAGAGTCGGGCTGTGTGGTGTGCCCACGTGGACGGCTGGACCACCCTCCACACCAACTGTGACCAGTCCCAGCGGCCTTCCAACCAGCAGAACTGCTTCCGTGTGTGCGACTGGCACAAGGACCTTTACGACTGGAAACTGGGTGCCTGGAACCAGTGTGTGTCCGTGTCAGCAAGGACCTTTGGGGGCATGCGGCCATACGTATGCAATGGGGGTGAGGAGGGCATTCAGACTCGGGAGGTGGGCTGCGTACTAAAGTCAGACGAGTCTCCCGGAGATGACAACATCTGTGAGTACTTTGAGCCCAAGCCTCGGCTAGAGCAGGCCTGCCTCATCCCCTGCCCTCATGACTGTGTAGTGTCTGAGTTCACCCCCTGGACGTCCTGCTCAAAAACCTGTGGAACCGGCCTAAAGAACCGGGTGCGCAGTGTCCTGGTGCCTCCGCTCTTCGGGGGTTCCGCCTGCCCCAACCTGACTGAGTTCCAGACCTGTAAGCCAGGGCCTTGTAAGGGGCCTGAGGGGGTGTACAGCCTCAGGGTGGGGCCCTGGATGCCCTGTTCTCTCCCCATTTCCCGGCCGGTGCGGCAGGCCAAGCGTAGGAAGGGTAAAGGGGAGGCCAGGGAGAGGCCTGGGGTCAAAGACCCTGATACTAGGGAGCTGATCCAGAAGAAACGGACCAGGAACCGGCTCAACAGGCAGGAGAGCCCCTTCTGGGACATCCAGCTGGGATACCAGAGTCGCACGGTGTCCTGTGCACACAGGAACGGGAGCACGGTGGGACTCAGTCGGTGTCTGCCTAGGGACCTCCCTCTGACGGTCCAGTCCTGCATCCTTGCTAAGGACTGTAAGCTGAGCGAGTGGGCAGACTGGGGCCCCTGCTCCAAGGCCTGTCTAGACCCAGACCCTGAGTCCTCCCGGGGCCAACGCTCCAGGACCAGACGCGTGCACCAGTTCTccgtgggggagggggaggactgCCCACCGCTGGAGGAGACGGAGCCATGTGACCCTCAGGGGGATGGAGTACTGCCCTGCGCCACTTACACCTGGAGGACTACAGAGTGGAGCGACTGTAGGGTGGACTCGTTGCTAAGTCAACAGGACCGTCGGCGTAGCAACCAGACCGGCCTGTGTGGGGGAGGGCTCCAGAACCGAGAGGTGTACTGTGTCCAGGCCAACGCCGAACTACTGACCTACCTCAACAACCTCAAAGACAAAGATGCATCCCGTCCTGTGGACAGCAAGCTGTGTGGGGGTCCCATCCCCAACACGTCCCAGCTGTGTCACATCCCCTGTCCCATCGAGTGTGAAGTGTCCCCATGGGGGGCCTGGGGACCCTGCACCTATGAGAACTGTGACGTCCAAAAAGGGAAGAAAGGTTTTAAACTGAGGAAACGGGAGATCAGCAATGAGCCAACGGGTGGACCAGGGAACTGTCCTCACCTGGTGGAGGCTGTCCCATGTGACGAACCCAGCTGCTGGGCCTGGCGCCTGGTCAGACTGGATGAGTGTATCCCCGACGGGGAGCTGCCGTGTGGCCCCGGGACACAGATACCTCAGGTTCAGTGTGTCAACAGCACCGGTGACATGGTGGACAAGGAGCTGTGTGGGGGAGCCCCTGCCCCTGAGCCCATCGCCTGTGATGTGCCTTGCCCTAAGGACTGTGTCCTCAGCGACTGGACTTCCTGGTCCTCCTGCTCCCAAACCTGTTCCAGCAAAACCATCGAGGGCAAGCAGCTAAGGACCCGCTCCGTACTGGCCTACAACGCTGGCGAAGGTGGCGGCATGTGCCCCAACAGCAGTTCTCTGCAGGAGGTGCGTAACTGCAACGAGCATGCATGTACAGTGTATCACTGGCAGACTGGACCCTGGGGCCCATGTACTGAAGATCCCTCAGCCTCAGCCCTCAACACCACCACTGGCCCCAGGTCTGCTGCTGGCCCAAACACCAACGGGCAGGGCCCCTGCTCCCAGGGCATGCAGACACGCAAGGTCATCTGTGTCCGGGTCAACGTGGGACAGGTGCCGCCCAAGAAATGTCCTGAGAGTCCTCGTCCAGGTACAGTGAGGCCCTGTCGAATGCCCTGTAAGAAGGACTGCATCGTCACCCCCTTCAGCGACTGGTCCCAGTGCTCTCCCACCTGTGATGCAGCTGGTAACATTCAGAAGAAGAAGCAGTCGAGAAAACGCGTCATCCTCCAGCTGCCAGCCAACGGGGGCCAAGACTGTCCTGAGGTGCTGGAGGAGGAAAAGGACTGTGAGGCTCCTAAAGTCTGCCCTGGTTACAGGTGGAAGTCACACAAATGGAGAAGGTGTCAATTGGTACCATGGTACATCAGGGAGGACAGCCCAGGGGCTCAGGAGACATGTGGACCAGGTCTTCAAACAAGAGCCGTGTCCTGTCGACAGCTGGACGGAGCGCAGGCAGACATTGGAGagtgtctgaagtttgccaacaCCATGCCCCCCATCTCTCAGCGGTGCCAGCTCCCATGCCAGGATGATTGCCAGCTCACCAACTGGTCCAAGTTCTCGTCCTGCACAGCTGACTGTGTGGGGGTCCGAACCAGGAAGAGGTTACTTGTAGgGAGAAGCAAGAAGAAGGACAAGTGTAAGAACACCCAGATGTACCCTCTGAGCGAGACGCAGTACTGCCCGTGTGACAAGTACAACGCCCAGCCCTTGGGTAACTGGTCCGACTGCATCCTGGCCGGGGGAGACCGTGTGGAGAGTCTCCCGGGCACAAAGGTCCAGGGGAACATCAAGGAGTGTGGCCAGGGCTACCGCTACCAGGCCATGGTGTGTTACGACCAGGACAACAGACTGGTGGAGACCTCACGATGCAACAGCCATGGCTACATTGAGGAGGCATGCATCATCCCCTGTCCGTCAGACTGTAAGCTCAGCGAGTGGTCCAACTGGTCCCGCTGCAGCAAGTCATGTGGTAGCGGGGTCAAAGTGCGTTCCAAGTGGCTCCGGGAGAAACCCTACAACGGAGGGCGACCCTGCCCCAAACTGGATCACATCAACCAGGCCCAGGTGTACGAGGTTGTGCCCTGTATTAGTGACTGCAGTCAGTATGTGTGGGTGGCTGAACCCTGGAGTGTGTGGAAGGTCAGCAACTTGGACCTGAAGGAGAACTGTGGAGAGGGCGTCCAGACCCGCAAAGTCAGGTGTATGCTGAACACTATTGACGGTCCATCTGAGTCTGTGGAGGACTACCTGTGTGACCCGGAGGACATGCCCTTGGGGACACGGGGAAGCCGGCTGCCCTGCCCCGAGGACTGTGTCCTCTCTGACTGGAGCAGTTGGAACCGCTGCAGCCTGCCATGCAGTTACAACAACAGCAGGAAACGGACAGCTTACGCCATCCGGTCACCTGGAGCAGGGAGACAATGTCCCGACACCACAGAGAAGGAGCCATGTAGTCTGAACCTGAACTGCTTTCACTATTTCTACAACATcacagACTGGAGCACATGTCAGCTAAGTGCCAATGCTGTGTGTGGGAATGGCATCAAGACGCGGATGCTGGATTGTGTACGCAGCGACAGCAAGTCTATCGACCTCAAGTTCTGTAAGGAGCTGAGCCTGGAGAGGAAGTGGCAGATGAACATTTCCTGTGTGGTGGAGTGTCCCGTCAACTGCCAGCTGTCTGATTGGTCGGCCTGGTCGGAATGCTCGCACATGTGTGGATTGGATGGGCGGATGTGGCGTAGCAGGGTGGTGGTGCAGGGGTCCCAGGGAGACGGGCGTCCCTGTCCCTCTcagctggagcagtggaaaccttgTCCTGTCAGACCCTGTTACAGGTGGCAGTACAGCCCCTGGTCTGAGTGCAGGGTGGAGGAGGTGGTATGTGGAGCGGGACTTCGCTACCGGAACCTGTCGTGCGTGGTGTCTGACGgctccagagagggagagggtagcaTGGTGGAGGAGGAGCTGTGTGGGGGTCTGGAGCTGGCTGtcaacagagacaaactgatcATACTGAAGGAGACCTGTGTTCTGCCCTGTCCAGgtgAATGCTACCTGATGGAGTGGTCTGACTGGAGCccgtgtctgagtgtgtgtgccaAAGGGGCCGGCGTGGACTTTGGATCTGTCCAGGTGCGCTCGCGAGCCGTCATGGCCCAGGAGCCTGAGAATGTCCAGCTGTGTCCTGACCAGGACTGGGAGTCCCGACCCTGTATTGATGGGGAGTGTTTTGAGTACAAGTGGATGAGCAGCACGTGGTCAGGCTCCTCTCGTGTCACCTGGTGTCAGCGCTCTGATGGACTCAACGTCACAGGGGGATGCCCCCCTATCAATCCTCCACGGGACGACAACAACTCCTGTGACCCGCCGTGTCAAATGCCATTGTCCTTCTGCACTGAGGCtggcgtgtgtatgtgtgaggaGGGCTACACCGAGGTGATGTCCTCCAGTGGCCAGCTGAACCGGTGCTCCCCCATACCCATCCTGGAGATCCCCACAGCCGGGGACAAGAAGACTGACGTGAAGACCAGCCGTGCCATCAACCCCACCCTGCCTGCCACCATACAGCCTGGACGCACCGGGCGCACCTGGTACCTGCAGCCCTTTGGACCAGATGGCAAGCTGAAGATGTGGGTATATGGTGTAGCAGCGGGAGCCCTGGTACTGCTCATGTTCATAGTGTCTATGATATACCTAGCTTGCAAAAAGCCAAAGAAACCAAAGAGACAGAGGCAGATGAACAACCGACTGAAACCTCTCACCCTAGCCTATGACGGGGACGCTGACATGTAGGACTCTGGGATAGCCTAGTCCTCCAGAGACCTGCCACACCTGCCGTAAAAACAAGGAGACATATCCCATCATAGGAAGGACAGGGATGTTTTCATCTGCAGATCAAGAAGACCAACGGCCATCTTGAATCCATTTTGGGTCCTCATGAGTTAAATGGAAATTGGAATTGAGGAAAAAATTCTCCACTTGGAGATATTTGGGTTTAGTCCATGCAGTTCTCCTTTTTCCCCCAATTTCTTTTGTGATATTTCCTTAAGCAAACGCCTTCATGGCCTCCACTCACTACGAGGAAAATGCCTTTTTTTGTTTGCCCTTTTTGCTTTCAAATGGAAGAGCTGCTGCGAAGAGACAAACTTTTCTGTCTTTGAACACAAACAGCACAAGCTCATTTCTTTGCTGCATTTTCTGCTCGTCCCTGAAACGTTGAGTAGCTGGAGGCTTAGGATGCACTGACGGTTCGCACGTTGCCAAAAGTCACCGCAGGGAAGGGGAGGAAAATCTCCATGAAAAAGGCTTGGATTCCTTTCCTTTCTGGGTTTTGACTGAAATCTCCTTCTTCGGTCGCAAACAAAAGAGATACTTTTGGTTACCGGTTGATTCCTAGGCAGTGGACTATCTTGGAGGATAAACATAtatacagacagagaacacaagATGAGAAACCATCCCTGGTTACTGGATCTATTGCCTGTCTCTCTTTTGCGTTGTTTCAGGAACTATTGTTGCACTACATTAGTGCAGCATGATATGCACATGATGACTTATATGTTGCATTGCCATAGAACATTGCCTCTCTTAAGACACAACCATATGCAGTTGGAAATCAAATGTGAAAATAATAGGCATTTTCAAGACCATGGATACATGATAACTGGAGATGATGTCTGCGTTCTATAACACAGGGGGGGTGTGAATCAATAGTAAATATGTATAGATTTTATTTTGCCACAACTCGTTTTGTTTTTGGTCCAGTTTCTTTTGTGGTCTGTATACTGCAGTTTGTTTGGTATTGTCCCTCTCTATGCCCGAATGAAATCGAATAGACTACATTAAACGAGGACCATTGATTCTGTTCTTGCTCACAATGAGATATTTCCAATGGTTTAAATGTTGTAAATATGAAACATAGCCCATGTGTACATGGAAGATAAATGGGCAAAtggattttcttattttttagaTAACTTGTTTTCGCAAAAAATCAAAACACTTCTAAAGATAAAACGATGTGTGTGACTgctattgtattttttttatctaaCTTCTAATGTCACGCAAAACCTAACTTCTGCCTTATTGTCAATGATCAACTATCTACAGTACCATATACATTCATGAAACCAACATATTTAATAATGGGTGCAGCACAGGTTTAAACTGTATGTCATTGATTCATGTGATGATTGATGAATTTGGTGATTGATGAATTTAGACGGAAGTTACACAGTACCATTTTCTTGGACAACACTACAGTTGTTTTCAGTTCTGACTTAAGACTATGGAAATGTCCTTTTTCACAATGGCCCATATCATAGTGCCCTTAGACATATGATAATGATGCAGTTCGTTCTCTCGGCGTACAATAATACATCATATATTCTGTATATATCGAGGTCCATCTAAGCAGCCGTCATCACAGTATATGAATACAGAGGAAATATGGTGCCGCTGTTCTACAGTGGCAGAATTCGACCAGTCTGCCTGAGAGCAAGAAGAACAGCTGATGAGGAGAATGTTTACTTTGTTGTTAGTTTTCCTTGTAAAtaataacattttttaaatttttttgaaAAAAAAGGTCAACTTATGTGAACATTTATTTTGTATTGCACAGAAATGTTTAGTTTGAATATTGCAATGTGGGTGTATGATATTACTGATGGGGGTTCTCTTGAAGCAAGTTGTGTGTTGTAAAAAAAGACAAGACTCCGTCGTTTTGTAAAGATTGTTTATATATGTATCGGAAGTATTACTAAAAATAAATGAAGAAAATGTTGTAAACATACTAA
>TU273722
CAGTCGGTGTCTGCCTAGGGACCTCCCTCTGACGGTCCAGTCCTGCATCCTTGCTAAGGACTGTAAGCTGAGCGAGTGGGCAGACTGGGGCCCCTGCTCCAAGGCCTGTCTAGACCCAGACCCTGAGTCCTCCCGGGGCCAACGCTCCAGGACCAGACGCGTGCACCAGTTCTccgtgggggagggggaggactgCCCACCGCTGGAGGAGACGGAGCCATGTGACCCTCAGGGGGATGGAGTACTGCCCTGCGCCACTTACACCTGGAGGACTACAGAGTGGAGCGACTGTAGGGTGGACTCGTTGCTAAGTCAACAGGACCGTCGGCGTAGCAACCAGACCGGCCTGTGTGGGGGAGGGCTCCAGAACCGAGAGGTGTACTGTGTCCAGGCCAACGCCGAACTACTGACCTACCTCAACAACCTCAAAGACAAAGATGGTAATGAGGCGTTTCTATATATAACACTTTTCCATAACAAAGTCTTATCTATATATAAGGGACTGATCCAAATGTATTGGGGGAGGGGCTGGTCCAAATCAAG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036973360.1 False 7572 mRNA 0.53 28 25918915 26024557
TU273722 True 543 lncRNA 0.57 2 25982609 25984116

Neighbor

gene id symbol gene type direction distance location
LOC110515870 LOC106584533 coding downstream 434 25911707 ~ 25918481 (-)
ica1 LOC106582178 coding downstream 23052 25883818 ~ 25895863 (-)
LOC110515765 LOC106582155 coding downstream 64491 25837637 ~ 25854424 (-)
LOC110515750 LOC106582146 coding downstream 93807 25822812 ~ 25825108 (-)
LOC110515676 LOC106582133 coding downstream 108267 25800237 ~ 25810648 (-)
LOC110515898 LOC106582196 coding upstream 46499 26071056 ~ 26094219 (-)
LOC110515941 etv1 coding upstream 142911 26167468 ~ 26186034 (-)
LOC110515948 LOC106582257 coding upstream 164365 26188922 ~ 26252950 (-)
LOC110515972 LOC106582276 coding upstream 251205 26275762 ~ 26316108 (-)
LOC110515986 meox2 coding upstream 293017 26317574 ~ 26331168 (-)
G239504 NA non-coding downstream 19785 25898818 ~ 25899130 (-)
G239502 NA non-coding downstream 42952 25874811 ~ 25875963 (-)
G239480 pngf non-coding downstream 84675 25832012 ~ 25834240 (-)
G239402 NA non-coding downstream 105728 25811205 ~ 25813187 (-)
G239515 NA non-coding upstream 31018 26055575 ~ 26057001 (-)
G239822 NA non-coding upstream 101326 26125883 ~ 26126134 (-)
G239836 NA non-coding upstream 121663 26146220 ~ 26146503 (-)
G239853 NA non-coding upstream 162446 26187003 ~ 26187203 (-)
G239864 NA non-coding upstream 184127 26208684 ~ 26209104 (-)
LOC110515384 LOC106582009 other downstream 682548 25171287 ~ 25236536 (-)
LOC110515208 LOC106581894 other downstream 952707 24936516 ~ 25052970 (-)
LOC110515154 LOC106605289 other downstream 1148592 24767049 ~ 24799511 (-)
G237832 NA other downstream 1397371 24521219 ~ 24521544 (-)
G240409 NA other upstream 544544 26569101 ~ 26569522 (-)
G240464 NA other upstream 650035 26674592 ~ 26675033 (-)
LOC110516631 LOC106582601 other upstream 1046498 27070914 ~ 27097259 (-)
LOC110516667 LOC106582624 other upstream 1087625 27111084 ~ 27127488 (-)
LOC110516678 LOC106605187 other upstream 1131011 27154680 ~ 27159987 (-)
G239519 NA non-coding downstream 45898 25936223 ~ 25936711 (-)

Expression


Co-expression Network