LOC110515999 (LOC106582287)


Basic Information

Item Value
gene id LOC110515999
gene name LOC106582287
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 26351160 ~ 26387451 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110515999
ATAAAAGAATGAATGAAACGGTAGACGGGGATACCGGTAGGATATATTCGTGACATCAATGTTAGTCCATTTTAACTTCAAATTAATTAATTGTCCTGAAGCATGCAAGAGGAAACGGGCGACATGGCCAGGCCTGTTGATCCAGGGCATTTCTCAACATGCGAAGCCCGGTTGGACAAGCACATTGCGGGACTTTGCAGTGTCGATTTCCCGGTAGCTGTGGTTCTTCCAGCCGGTGGCAGTGGAGAAAGAACGGGGATATTGACACCCAAACAGTTCTGCACGTTTCTCAACAGACTTCTGATAAGCTACACAATTCAAACTTTCGAGAGAGTGCCATGGATCCAAAGCATCGTTGTGGTGGTTGCCAAGGAGAGCTTAGATTTGATGATGGACATTATCCACGCTTCCACCACAGAAATGTCCTAGTGGTACATGGCGGATCTACTCGCCACAGATCTATATTCAATGGGGTTGGGCCCTCAGTGAGTGAGAGGGTGGTACGGCCCACGTCAAACCAAAGGTGGTCATCATTCATGATGCAGTGCGTCCCTTTGTGGAAGAAGACTTCCTCCTGAAGATAACAATGGCTGCATGGCTGCCAAAGAGCAAGGGgcTGCTGGGGCTATCCGACCTCTGGTTTCCACAGTGATTGCTACCACATTGGAGGGCTACTTGGACCATTCTCTGGAGAGAACCAAGTACAGAGCCAGTGAGATGCCCCAGGGATTCATCTATGATGTCATCTACCAGGCTTATCAGAGGTGCAGCGAGTCGGACTTTGAGTTTGGCACAGAGTGCCTTCATCTGGCTCTGCAGTACTGCGGCACCAATGCCAAGCTCATCGAGGGCCCGCCAACCTTGTGGAAGGTGACCTACAAAGGAGATTTGGCTGCAGCAGAGTTCATTGTCAAAGAGACTCTCTCCCAGTCGGCCTGTGTTGTCACAGGTGAGTCTGCACAGGCTACAGAGCTGGCCAACGCTCTGCAGAGGCGCATGAGCGCTTTGGACATGGTATGGTGATAATTATGACGATGATTACAATTACAATGTTTGTGAGATTTTACATGCGATCATCACATTGATGTTTCTTTCACCCCTCCAACAACACCCCTCTCCCAGACCATGTGAGCTCCGCTTGGGTGGGCCCCGGTTAGACTTGCCATCTGCTGTTAGACCTATAATGGAGCTTGTCTGAAGGCTTCCAAaccctcctccccccatcccccctctgcctctccaccactccacctccCCGGCATGACGGAAAGCAGATGGCAGTCATATAGTTCATGCCATGGGAATTATCTGATTAATTGAGTGTTCAGCGATGACTCTTCACTACCGCCCATCATGTTGAAGGGCAACCAGTGTCCCCATACCGTCCCCGTATGACATATCTCCCGTTCATTCTCAGTCATGGTGAAGGGGTCACAGGTTGCCATATTGTCCCCACAAATCACATTGCACTTCTCCATTCTCATGAATTATATAACAGACATTCCCGGCCTCCTACCATACCGTCCCCACATCGCCGTCGAGTCTCTTCCTTCCTGCGTATATCGAAAAGTATATGCATCCTCCCTCTGTAGTTGACAACAGAGGGGGGAAATGCATGGCGGATGAAGTGTGTTGGTGATACAGGGAGAGCACAGACACACCGACAGCTCATCCTCCTGTGAAGCAGTGCCAATCCCTTCATCAGGCAGTACGCGTCAAACAGGCAGCGGATCTAGCTGTCGTGGTGCTAGGCAGACCCCTGAGATGTATGGGATCCTAGGAACCTAAGGCTTTGGCTCTGATTGGAACCATCGTTCCTTGCACACGGGTGCCCGGTGGGGTTGTGTTGCGGTGCACGCGTCTGGGACCAGATACATCCTTCCCAGGGGTTCGagggagatgaaaggagaggaaacgGAGGAGTTAGCTTTGTGATCAGTGCCATTAATGAATCTAATACAGGGGATAAGGGAGGTAGAGCCTGAGCTGGAGCTTGGAGGCGAGcacacagtgtggtgtgtgtgcaggTGGAGGATTTGGCTGCGTGTGTGTTATTGTGGGGAGAATATGATTAGGGGGTTCTCATAGCAGGATGAATATGGACGTGATCCCATAATCATAGTGGAAGATGCATATTAATACAATTTCATGTTTAttttgtaatatattataaacaatGTTCTTGTTAGCACTTTTATTTCTTGTTCTGTACATAATGTTGgtcaaatattattattattttcttttttttaggtTTTTAGTTTTTCTTTGTTGCCACAATAACCCCAGATCACTTGTCCTTTATCAGACATTCCCCAGACCGTTCAAACAAACAGCTTTCTTCACCATTCAGAATTTTTTATTTAATAAGTAAACCTATTAGTGCCACATTTATTTCAGTGTCTTGAGACAAAGGAATTGGAATTTTACCACAAAAACATAATTCTGACATTACAGTAGAGCTGCCACTGAAACatctgcatgtttttttttacatttaggctCTGAGTCCATTTGTGTCGGAGCCCAATCTAATAGACATTAGTGTCATGATAGGAAGGGAGGATCTGATGAAGGGAGAACACCTCCATCCCCTCCTTATCTTTAACATTTTGAGCTTGGTATAAGATAGTATTTCATATTCACTCAAGATTAAGTACAATCTTGGAACACATGAATTATATCCCTCCTTTTTCAAAAATATGAACCTTGACCTACTAGATATTTAGTCATGGACACAGCCAGATAGATGAACAGCTAGGTCGGGACAAAGCTCACTGAACTACACTTTGAGCACTATTATTCAAATCATGTCTATCCTTTCTCTTTGTCTAAGTTCCCCGGCATTTCGAACAAGCAACTCATAGTTTGAAAAAGTAATAGGTAACGCTTTATTTTATAGCCTGTTTTAAGCTGGGACTTGGTATTTCTAAGGTCTTTACTAGGAAACAATGTTGGTAACATCTTACTGAATTGAAACTCATAGTTAGGGCAGTTCTCTTTTTTTCCTCTGGCAGCCTGGAACTTGATTTCTGTCTCGGTCACGGAATCTCTGGTGTGTCTTGTACTTGGTCTTTGACCTCCTGTCTCCTTGGCTCTCCCAGACAGACTTCTTGAACAAACATCCCATTCCAGAATTTCATGCCCAACTAACCTTGTTTAAATCATGTCAGAAAAGATCATCTCGCAAATCTACATTTCTGACTGATGCTTTTCCCTCAGAACCCACAAGCAACTTATCTTTCTGGATCAAATAACGCTCCACATGTTTCCCGTAACCATTTCATATTTCTAATTGTCGTTGTTATTCTAAACGGTTCAAAGTCAGTGACAAACACAGAGCGtggatgtttgtttctgtgtttATTTCCTCTTGTGTATGAAATGTTGGACAGGACCAGGGAAGAATTACTGGGAAAACAGAAGAGATGAACATGAAATGGACACACTGACTGTAGCATGTTGTACAGCTTAATTTCATTTGTATTCAAGGGCTAAATTCGTTGAAAGATACTCAGCTAAAACGTGGTTACAATTACAGTGAACAAAAATGCTTTTACTATTTTGGACTGTGCTGAATTTTGATTCGATTTACAGTGTAATGTCATTTAACTTGGCTCATCTGCAATTCTGTCCCCAGGCTTCTTTGTACGTTTTATCATTCTGCCAGCTCGGAGAGACAAAGAGAACCCAGCAGTGGTTCCTTGTCTCTTTCATTTGTTCTAATGAGCAATCCAGCCATGGAGAGAATTTAGCTTATGATCAATGGTGTTCAACTCTAGTCCTGGAGCTACGTAATGTATGCTGGTTTTGTCCTTGCTTTCTAATCAGGGACTCATTTATTATTGGGTAACCAGGTGTGTGGACTGAGACTCTCCGGTTGAAATGAATTGATGAAGTGCCAGGGAGAAATTAATTCCTGCATGGAAAACCCTCTTGGATTGTAGTTGAGCTCCCCTACATTCCAATATAATTTAACAGCACTAACTAACATCACAATTTGGTTTATTTCACATTTTAATAAAGGATTTCTGCAAAATGTTTCTTTGTCTCTTTCTTCGAGGAGGTGGATATGATCTCAGACTTGATAAGGAGACGATCTCTGTCAAAAGAGTGGAGCTTTATTCGAGTTTCTATGGAAAAACGCTGAGTGCGTTGGAGGAGGGAGACCGAGCACTCCTGCATCCAGTGGTCATTAGTTGGGTGTATTTGAGCGTGTGGAAGGACGATTCGTCCGCCAGCGAGCCGATGGGAGGAGAGCCGGCGGCCATGATGGAGCCAAGCTCGGAAATATTTTAGTCTATGGGATCCAGCTTTATCACTCATAGGAAGCTACACTTTGGGGCGGTCAGTGGAGAGGGTGGCCCAGATGTCCTGTGCTCTGATCCGGGACAGAAGCCCCGCCCTTACAGGACAGCTGCTCCAGGCGTGAGTCAACCCGGAAGAGCAGACCACTTCGTCCAGCCTCGCCTTGGACCACCCTTATCACTACTACCCACCTATGACTTTGCTACAAGGTGTGTGTTTGAGAAACACTCTGAGCCTTCAAACTCTGTGTATGACATGAACTGCACGAGAAAAAGGAACCGTGTGATAGGGAAGAGTTTAACATGGAGACAGTTCGCTTTGCAAGTGTGTGAGACTATCTATAGTCCTATGGTCTGAGACTTCAAACAGTACTGCGTTTCATTCACATGGagaaatactacagtttactatagaatactacagtacttactaaataattctgtagtaaactgcagtataatatactacacactg
>TU274179
CAAGATTAAGTACAATCTTGGAACACATGAATTATATCCCTCCTTTTTCAAAAATATGAACCTTGACCTACTAGATATTTAGTCATGGACACAGCCAGATAGATGAACAGCTAGGTCGGGACAAAGCTCACTGAACTACACTTTGAGCACTATTATTCAAATCATGTCTATCCTTTCTCTTTGTCTAAGTTCCCCGGCATTTCGAACAAGCAACTCATAGTTTGAAAAAGTAATAGGTAACGCTTTATTTTATAGCCTGTTTTAAGCTGGGACTTGGTATTTCTAAGGTCTTTACTAGGAAACAATGTTGGTAACATCTTACTGAATTGAAACTCATAGTTAGGGCAGTTCTCTTTTTTTCCTCTGGCAGCCTGGAACTTGATTTCTGTCTCGGTCACGGAATCTCTGGTGTGTCTTGTACTTGGTCTTTGACCTCCTGTCTCCTTGGCTCTCCCAGACAGACTTCTTGAACAAACATCCCATTCCAGAATTTCATGCCCAACTAACCTTGTTTAAATCATGTCAGAAAAGATCATCTCGCAAATCTACATTTCTGACTGATGCTTTTCCCTCAGAACCCACAAGCAACTTATCTTTCTGGATCAAATAACGCTCCACATGTTTCCCGTAACCATTTCATATTTCTAATTGTCGTTGTTATTCTAAACGGTTCAAAGTCAGTGACAAACACAGAGCGtggatgtttgtttctgtgtttATTTCCTCTTGTGTATGAAATGTTGGACAGGACCAGGGAAGAATTACTGGGAAAACAGAAGAGATGAACATGAAATGGACACACTGACTGTAGCATGTTGTACAGCTTAATTTCATTTGTATTCAAGGGCTAAATTCGTTGAAAGATACTCAGCTAAAACGTGGTTACAATTACAGTGAACAAAAATGCTTTTACTATTTTGGACTGTGCTGAATTTTGATTCGATTTACAGTGTAATGTCATTTAACTTGGCTCATCTGCAATTCTGTCCCCAGGCTTCTTTGTACGTTTTATCATTCTGCCAGCTCGGAGAGACAAAGAGAACCCAGCAGTGGTTCCTTGTCTCTTTCATTTGTTCTAATGAGCAATCCAGCCATGGAGAGAATTTAGCTTATGATCAATGGTGTTCAACTCTAGTCCTGGAGCTACGTAATGTATGCTGGTTTTGTCCTTGCTTTCTAATCAGGGACTCATTTATTATTGGGTAACCAGGTGTGTGGACTGAGACTCTCCGGTTGAAATGAATTGATGAAGTGCCAGGGAGAAATTAATTCCTGCATGGAAAACCCTCTTGGATTGTAGTTGAGCTCCCCTACATTCCAATATAATTTAACAGCACTAACTAACATC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110515999 False 4782 mRNA 0.39 9 26351160 26387451
TU274179 True 1348 lncRNA 0.39 1 26372482 26373829

Neighbor

gene id symbol gene type direction distance location
LOC110515986 meox2 coding downstream 19992 26317574 ~ 26331168 (-)
LOC110515972 LOC106582276 coding downstream 35052 26275762 ~ 26316108 (-)
LOC110515948 LOC106582257 coding downstream 98210 26188922 ~ 26252950 (-)
LOC110515941 etv1 coding downstream 165126 26167468 ~ 26186034 (-)
LOC110515898 LOC106582196 coding downstream 256941 26071056 ~ 26094219 (-)
LOC110516015 LOC106582291 coding upstream 2360 26389811 ~ 26392182 (-)
LOC110516029 ankmy2 coding upstream 9365 26396816 ~ 26401897 (-)
LOC110503977 bag6 coding upstream 21033 26408484 ~ 26424365 (-)
trnaa-ugc-3 NA coding upstream 74398 26461849 ~ 26461922 (-)
LOC110503983 LOC106582320 coding upstream 87647 26475098 ~ 26524060 (-)
G239904 NA non-coding downstream 30620 26320315 ~ 26320540 (-)
G239864 NA non-coding downstream 142056 26208684 ~ 26209104 (-)
G239853 NA non-coding downstream 163957 26187003 ~ 26187203 (-)
G239836 NA non-coding downstream 204657 26146220 ~ 26146503 (-)
G239822 NA non-coding downstream 225026 26125883 ~ 26126134 (-)
G240348 NA non-coding upstream 27951 26415402 ~ 26443224 (-)
G240371 NA non-coding upstream 78984 26466435 ~ 26466854 (-)
G240384 NA non-coding upstream 86318 26473769 ~ 26474043 (-)
mgat1a LOC106582341 non-coding upstream 148391 26533644 ~ 26536641 (-)
G240402 NA non-coding upstream 151475 26538926 ~ 26539245 (-)
LOC110515750 LOC106582146 other downstream 526403 25822812 ~ 25825108 (-)
LOC110515384 LOC106582009 other downstream 1114793 25171287 ~ 25236536 (-)
LOC110515208 LOC106581894 other downstream 1384952 24936516 ~ 25052970 (-)
LOC110515154 LOC106605289 other downstream 1580837 24767049 ~ 24799511 (-)
G237832 NA other downstream 1829616 24521219 ~ 24521544 (-)
G240409 NA other upstream 181650 26569101 ~ 26569522 (-)
G240464 NA other upstream 287141 26674592 ~ 26675033 (-)
LOC110516631 LOC106582601 other upstream 683604 27070914 ~ 27097259 (-)
LOC110516667 LOC106582624 other upstream 724731 27111084 ~ 27127488 (-)
LOC110516678 LOC106605187 other upstream 768117 27154680 ~ 27159987 (-)
G239939 NA non-coding downstream 1491 26370752 ~ 26370991 (-)

Expression


Co-expression Network