LOC110516015 (LOC106582291)


Basic Information

Item Value
gene id LOC110516015
gene name LOC106582291
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 26389811 ~ 26392182 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021594671.2
CTGAGCGGTTGCCAAAACTAGACTCGGGCAGGCCTATATAAAACAAGCTCAGAACGTAGTATCTCTGCCGCAGACATCAGAGGCACAGAATCAATTTACCTGACACGGGATCTGCTTATTCCCTAAATCCCCAGAAGCAAATATGCACTTGAGCGCATGCAAGTCGTGCCACCTTGTATTCTTGTTTTCTATTCTTGTGAGGAGTTGCCAGGCGTTCAATAATGATGCTACGGAGATCCTATACTCGCACGTGGATACTCCTGTGCAGGATGCCCGGAGCAATGTCTCTTTAAATCGGGCAAGAAACGGCGGGAGAGGCGCGGGAAATACTGCTGGGAACGATAGAGTTGACCAGAGAAGCCAAGTTGGCTGTAGAGAGCTGAGGTCCACCAAGTACATCTCTGATGGCCAATGCACAAGCATCAACCCCATAAAGGAGCTAGTATGTGCTGGCGAGTGCCTCCCCGCTCAGATGCTTCCCAACTGGATTGGCGGCGGCTACGGCAGAAAGTTTTGGAGCCGGAGGAACAGTCAGGACTGGCGCTGCGTCAACGACAAGACGCGCACCCAACGCATCCAGCTGCAGTGCCAGGACGGCAGCACAAGAACGTACAAAATCACCGTGGTCACCTCGTGCAAGTGTAAGAGGTACTCCCGGCAACACAACGAGTCGAGCCATATGAAGTTTGAGGAGCCTGCCTTGTCTCGGCCCCAGCTTCTCCACAAACACAAAGCCAAAGCCAAAAGGAGGCTAGGGAAGATCAAGCTAAATGAGAATTGGCATGAAGCAGAGCCCTAAGGCAGGACTGCAGAATGCCTCTGTGACTGTGGTCTTGGATTATCTCTTTATTGGGACTGGCTTGTTGTGAGGAGGACCACTGAAAGTGACTTTGTAAAAGCAAATGGCATTGGTTGCTTGCTACATCTGAGGACCAATGGGCACCATTGAGTCATTAGCTAATAAGATGAAATTAACCTAAATGGGGTCATCATGACCAATAGAACTGTCTGGAACTTTAAGATAACTCGCATCATTTAAGTTCTTGTATGACAATGTAAACCTGCTCATAACTCCATTATACAAACAGTTTTACAGCCAATATAATGTAATAAAATAAGCTCTGCATGAAAAGGGATTCCCAACACAAAAGCACCACAAATACACAACACAATGTAAATATGTGtacatatataatatgatatcACATGTCCTCTGAAGTATGATAACATATGTATAAACGTTTTCGATAAGATGTATATGATGTAATATATGTTGTATTGCTATTCATTTGATAAACCTTTTAATATGCATCACATATTTTGCAAAAATCTGTCATTGCTCATGCTTTCATTTTAATAAAACATGTTAACCCAAATTT

Function

NR:

description
sclerostin domain-containing protein 1-like

GO:

id name namespace
GO:0005615 extracellular space cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021594671.2 True 1379 mRNA 0.45 2 26389811 26392182

Neighbor

gene id symbol gene type direction distance location
LOC110515999 LOC106582287 coding downstream 2360 26351160 ~ 26387451 (-)
LOC110515986 meox2 coding downstream 58643 26317574 ~ 26331168 (-)
LOC110515972 LOC106582276 coding downstream 73703 26275762 ~ 26316108 (-)
LOC110515948 LOC106582257 coding downstream 136861 26188922 ~ 26252950 (-)
LOC110515941 etv1 coding downstream 203777 26167468 ~ 26186034 (-)
LOC110516029 ankmy2 coding upstream 4634 26396816 ~ 26401897 (-)
LOC110503977 bag6 coding upstream 16302 26408484 ~ 26424365 (-)
trnaa-ugc-3 NA coding upstream 69667 26461849 ~ 26461922 (-)
LOC110503983 LOC106582320 coding upstream 82916 26475098 ~ 26524060 (-)
LOC110516068 LOC106582335 coding upstream 132197 26524379 ~ 26533272 (-)
G239939 NA non-coding downstream 18820 26370752 ~ 26370991 (-)
G239904 NA non-coding downstream 69271 26320315 ~ 26320540 (-)
G239864 NA non-coding downstream 180707 26208684 ~ 26209104 (-)
G239853 NA non-coding downstream 202608 26187003 ~ 26187203 (-)
G240348 NA non-coding upstream 23220 26415402 ~ 26443224 (-)
G240371 NA non-coding upstream 74253 26466435 ~ 26466854 (-)
G240384 NA non-coding upstream 81587 26473769 ~ 26474043 (-)
mgat1a LOC106582341 non-coding upstream 143660 26533644 ~ 26536641 (-)
G240402 NA non-coding upstream 146744 26538926 ~ 26539245 (-)
LOC110515750 LOC106582146 other downstream 565054 25822812 ~ 25825108 (-)
LOC110515384 LOC106582009 other downstream 1153444 25171287 ~ 25236536 (-)
LOC110515208 LOC106581894 other downstream 1423603 24936516 ~ 25052970 (-)
LOC110515154 LOC106605289 other downstream 1619488 24767049 ~ 24799511 (-)
G237832 NA other downstream 1868267 24521219 ~ 24521544 (-)
G240409 NA other upstream 176919 26569101 ~ 26569522 (-)
G240464 NA other upstream 282410 26674592 ~ 26675033 (-)
LOC110516631 LOC106582601 other upstream 678873 27070914 ~ 27097259 (-)
LOC110516667 LOC106582624 other upstream 720000 27111084 ~ 27127488 (-)
LOC110516678 LOC106605187 other upstream 763386 27154680 ~ 27159987 (-)

Expression


Co-expression Network