apom (apom)


Basic Information

Item Value
gene id apom
gene name apom
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 26438153 ~ 26446090 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021594686.2
TACCACAATCCTAAAATGTTCGAAGCTCAATCCGGACACAGAAATATCAAGCCCAGAAAGAGAGATCAATTGCCAGGTTTCTTTTAGGCCACAAGTTGATTAAGGTGGTTCAGGTATGTTAGAGGCCAAGGAAGTGTATTCGTTCTTGCTCTTTGTGAATGGGTGGTTGTGTCAGCTCTTCTCCCCTTGCTCCCAACCAGTCCTCCTATCTACAAGCAGTCTCAATACCCAACAGtatctTGGCAAATGGTACTTCATTGCAGCGGCTGGTGTGAAGGAGTCGGATGTGCAGATGTTCAGACAGATGGACAGCACTGTGTTTTACCTGAATGAGACCTCTAAaaatgcactactgttgaccggAGCCATGCGCGTgGGTGTTCATTGCATTATGAAAAACTGGACCTACACTATTCAGTCTGGCAAAGATGATTTGACATCAGAAGGCAGGCCTGAGCTGCAAACTCTAGTGTGGAGTGGAGAGTGGTTGAACTGCACCCAGTGTATCCTGCTGCAGGAGATAGAGCGTCACTTGGACCCACTAGAGACACACGACACCCTCAACAGATTCATGCTTTACGCTCGTGACAGTGCCTTATTGGATAATAAAGTGGTGATGGCGTTTCAGACCCAAACAGCTTGTAAAAACATGGACAGATTTGTTCATCTCCCTCAAGAGAAAGAGCTTTGTAAATTGGAGAATAAGGCGTAGCACTGAGGCTACCTGATATTTGTTGGAATCTTCAATCAAGATCATGCTATGCATCAAAATAGGTTTCCTTTTGATAGTTTAATATTAGCGTATTGCCCACTCTAACTTTGATCTAACTCAGAAACGTGGAACTAATTCAAATGAAGAACCCTCCTCTCATTTCCCATGTGTAATAGCAAAACAAATAAACAGAAAAAAGAACAGCTATACAAAGTATGTTCCAAAGTCTCAGAATGGTTAGAATAGCACTAGTGACCCATGCTTAGACTTCTTATCAAGTTGTCAAGCTTTCTAAAAGGCACATTTTTCACTTTCACTCATTTCTCTTTTTGTGAGGGATGATGTAACTGTCATGGTTCAGTCATGGTTCACTGAACTGCATTGTCCCCCTCTTTGCCTACCTCCAtcaatggaggctgctgagtggaggttggctcataataatgtctggaatggagtcaatggaatggtatcaaacacttcgtttccatgtggttgataccattccattgactccattccagccattattatgagcagtcctcccctcagcagcctccactgacctcCATCTAAATACCATTGATATACTAAGATAATAATCCAGGGGTACTTTATGGGGGAGGAGCCACCCATGTAGTCACACTGACAGTGCAGGGGAAATTCCCATGATGCTGCTGACAGAGCAGAAGCTCAGAGCACACAGTTGTTCACAACTAGAGTGGTCATCAACAGTTCTCTTCTTCATTTGCTtcattaacccactgttcctaggctgtcattgtaaataagaatttgttcttaactgacttgcctagtaaaattaaaatacaaaataaaataaaaatacaagagAAAATTGAGAATTCTTTGAGTTAATAGTTTCTAAAAGAAAATGATGTCAAAGCCATTGATTGATGTAAAATAGCCCGACTTTCATCTGCACTGGCATCAGTGACAAAGCACAATGTCCAGTACTTGACATTATCAGGTTATGTGGGTTTTTACCTGTAGCCTCAAGGAAAGGCCAAACAACAGTGTCCTTATGCTTATGTAACATTTTGAATCCTATACTGTAGTTCTGGACCCGTATTAATAAAGCAGAGCAGGAGGCCTTTCAGATAATGAATAAGGTTACATAGAGAGGGAACCTGATCctatcagcacttctactctgagaagCTTTATGAGTACGGGCCCTGGTTAGAAATGATTGACATACCAGGGGTTGCGACCAGTGACAGGAGACACTCAATGGCTGAGTGAGACAAAGTCAACATGTAGCTAACAACGTCACCATTCAAGTACCTCTGTGTTTCAACTATGCCCGGGGCTAATATGAATGTCAGAAAATATCCCGAAACCATGATGAaatccttgtctctctccctccccctctccatttaTCTCTCTGATTTACGTACTTTCAAAGACTTGTGACGCACCAACATGAAGTCACTTGACTTCCCAGATACACTTCGGCATGAAACAACTTGCTGACCGGCAGAAAGTACAGAGGTCAGGGTGAGAATTTACCTCCCATCTCCGTCAGAATGACTTTAGATTCTTACCTTTCTCTCACCTGTACGATGTCCATAATAGGACAGCCTCAATCTCAGCAGGACTTGTTTCAATAAGTTAATATAGTCACCGTACAGCTGAGGTTCTATTCCCAGTGTGTTCCTCTTTTCACTTCTGGATCGTTTCTCAAATATCAATGCTATTTACAGTATATGAAAGAATATCTTGTTAAGCCCAAAAATAGGCAGTCAAACTCTTCCCTGCAAAATAATTCATTACTGTCAAACGATCGTTCTTCCAGCCCACCTCTAACATACCTGATTGTTGATGAGCAGTTTACTAGTAAAACACTAATCAGGCGTGTTAGTGCTGGGCAGAAACAAAAACATGCACACCCTTTAGCTCTCCCTGACCAGGAATGGTGACCGCTGGTATATAGCAATATTGAGCCAAACACATCTTTGATGCTGCACAGATTGAAATCATTTATCTAAAACTGAACAGAAACTGAACAATTATCTAAAACTGAACAGAAACTGAACAATTATCTAAAACTGAACAGAAACTGATCAATCATCTAAAACTGAACAGAAACTGATCAATTTTCTAAAACTGAACAGAAACTGATCAATCATCTAAAACTGAACAGAAACTGAACAGAACATAATTAGATGGATTCCAAAAGGTTTCTGCTTTCAACAATTTCAGGAAGATGGGGAAAAGACTAAGAGGCAAACATGATTGAAGGCCTTGTCTGAGAATTGTGCCTGCGTTGGGTAAGCACCTAAACCATCTGTGTTTGTGTCAAGGAAAGCACAGGCAGGTTGATTGAGGATGTGCCATGGAGCTTGAAACCAAGAACAGGAAAGTTACATAGAAATCTACCAGcaaacactctctctttctctctttcactctctctctttctctctttcactctctctctctctctctctctctttcgctctctctccactttctaaAAGTTACTTTCAGTCCTGTTTATGAAATCAACAGTGTTCAACTTCACGCATCTGCATTCCCATACCCTATGGCTATTCCCATACCCTATGGCTATTCCCATACCCTATGCATGTAAAGTCAGATAGAGTCACAGTGGCTGCCAGCTGGTGTATGAAACCATGAAGAGAACTCCCTGTCATGTTTTTGTGCCCTTCGAACCCGCTGACACTGACCTATAAATATGTAAGGGAAAACACATGCCGCCCACATCTGTCAATGTTGTGCCGTACTCATCTTTAGCCTTACTAGCCTATAGTTCCTTGCTACAGGGATGATAGTGGTTCTGTCACCTTCTCTTTGCCCgtactgtcatacttgagtaaaagtaaagataccttaatagaaaatgcctCAAGCAAATGTGAAAGTGAACTGAATTTGAAAACTGAATCTAAATGTATCTGAGATGTTGAATATGTGAAACTATGGTAAATTTGAAATTATAGTTTGTAAACTTGATACACAGACAATGAATGCAATATCCACCACATTGAAACAGAACATAAATATTGAATTAGAATTCAATTGTAATAGAATTTTAAAACTGAATGCAATATTCattaaaataattttaaaatcATGAAATACAAGTTCAAGTTATTAGttcaatgattacatttgtgCATTACAAATGTAAAAATATTGCATTTAAATTCAATATCTTAATGCAAATAAAAAAGTATTGAATTCAAATACAGTTTCTGTTGTCACTGATATCACTCTGTAATCGCTCTGTAATCGCTCTGTAATCGCTTTCTACtcccatatattttccctgacacccaaaagtacttgttacattttggaTGCGGAGCAGGAAAGCGATGGAGCGATTACAGCGCGATATCAGAGCGATATCAGAGCGATTACAGAGCGATATCAGAGCGATTACAGAGCAATATCAGAGCGATTACAGAGCGATATCAGAGCGATATCAGAGCGATTACAGAGCATTACAGAGCGATTATAGAGCGAATACAgagtacatattttctttaggaatgttagtggagtaaaagtaaaagtttaaaaaatattttgaaatagtaaagtaatcaacatttttttttaaaacgctGAAAATCCAATGTTTCTATGTCAAGCGGTTTTGTTATTTTTCAGTCTACTGTGAtgaatataaagtgtaatattgggatgcaaactcaaaattgaatacatttaaactatatcaga
>TU274247
ATCTTAATGCAAATAAAAAAGTATTGAATTCAAATACAGTTTCTGTTGTCACTGATATCACTCTGTAATCGCTCTGTAATCGCTCTGTAATCGCTTTCTACtcccatatattttccctgacacccaaaagtacttgttacattttggaTGCGGAGCAGGAAAGCGATGGAGCGATTACAGCGCGATATCAGAGCGATATCAGAGCGATTACAGAGCGATATCAGAGCGATTACAGAGCAATATCAGAGCGATTACAGAGCGATATCAGAGCGATATCAGAGCGATTACAGAGCATTACAGAGCGATTATAGAGCGAATACAgagtacatattttctttaggaatgttagtggag

Function

symbol description
apom Predicted to be located in extracellular region and membrane. Predicted to be integral component of membrane. Is expressed in liver.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021594686.2 False 4450 mRNA 0.40 7 26438153 26446090
TU274247 True 354 lncRNA 0.40 1 26445556 26445909
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110516043 LOC106584540 coding upstream 31742 26402996 ~ 26406411 (+)
LOC110515923 LOC106582214 coding upstream 320356 26115282 ~ 26117797 (+)
LOC110515914 LOC106582211 coding upstream 367274 26068542 ~ 26070879 (+)
LOC110515888 LOC106582194 coding upstream 381142 26049321 ~ 26057011 (+)
LOC110515810 LOC106582161 coding upstream 554865 25866173 ~ 25883288 (+)
LOC100136321 LOC100136321 coding downstream 1772 26447862 ~ 26462094 (+)
tnf tnf coding downstream 24383 26470473 ~ 26472863 (+)
LOC110516147 ppt2a coding downstream 121519 26567609 ~ 26573700 (+)
LOC110516161 LOC106582353 coding downstream 128062 26574152 ~ 26597121 (+)
ccdc105 ccdc105 coding downstream 151388 26597478 ~ 26600840 (+)
G239961 NA non-coding upstream 35689 26402169 ~ 26402464 (+)
G239960 NA non-coding upstream 41035 26396816 ~ 26397118 (+)
G239783 NA non-coding upstream 64334 26372444 ~ 26373819 (+)
G239782 NA non-coding upstream 66177 26371711 ~ 26371976 (+)
G239751 NA non-coding upstream 115354 26322219 ~ 26322799 (+)
G239998 NA non-coding downstream 20241 26466331 ~ 26466567 (+)
G240009 LOC106605218 non-coding downstream 33116 26479206 ~ 26484820 (+)
G240010 NA non-coding downstream 39589 26485679 ~ 26487748 (+)
G240043 LOC106582341 non-coding downstream 87570 26533660 ~ 26534958 (+)
G239752 meox2 other upstream 109822 26327408 ~ 26328331 (+)
G239697 LOC106582257 other upstream 217970 26213642 ~ 26220183 (+)
G239026 NA other upstream 896540 25540769 ~ 25541613 (+)
G238540 LOC106582009 other upstream 1238919 25195287 ~ 25199234 (+)
G238050 NA other upstream 1662208 24775279 ~ 24775945 (+)
G240244 NA other downstream 605096 27051186 ~ 27051954 (+)
LOC110516767 LOC106605158 other downstream 810498 27240708 ~ 27264405 (+)
G241150 LOC106582751 other downstream 1110082 27556172 ~ 27558532 (+)
LOC110516984 NA other downstream 1268953 27705985 ~ 27723794 (+)
LOC110516993 LOC106605183 other downstream 1301257 27725189 ~ 27749972 (+)

Expression

apom(apom) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 80.
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apom(apom) Expression in each Bioproject

Bar chart with 21 bars.
apom(apom) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 3000.
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Co-expression Network