LOC110503983 (LOC106582320)


Basic Information

Item Value
gene id LOC110503983
gene name LOC106582320
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 26475098 ~ 26524060 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036973530.1
CTAAAGCTGAAAATAGAGGTCAATGTTGTAAAAACGACTTATTCCTGCTTTATTGACATAGGATCTGAAGGCTTTATACAAAGGCTTAATACTGGCTCAAATTGCATATTTTGGGAATCTTCCATGTTGCTTATTGCCTAGAAATACTTACCGATTAGGATAACTCCATAACGCTTATCATAAAATTAAAGCTCTTAGATTTGCCATGATCACGATTTGCTGGCGTGGGCCAATACCTCAACATGCATCTTGGATAAGTGTGCGTGAGAAATGTACTTTTACGCACGGTAGGCTTACCTACGTACGTCTCTCCATCATGACGTCGTGAATTAGCTGGAGATTGtattgagagagaaaaaagggaggGGAGTGTAAGGATTCGGTGTTTCGTCGTACATGGGGAAGCGATTGTATATAGTGcgtgtatttatatgtacattaTTCGTTTCTGACTTTTCACCATACGAAATTGAAGTAGATGGCAATAGACTGATTAATACGGTTGCTTTTGACATTCAATGTATAGCCTATGCATGGGGACCGGATTGCACATTTATAGCCATAAAAACATAGCCATACAATACGTTGCAAAGAAGCACATTTGACCAAATAATTCGACATTTGGGTGTTCCCAAACGAGTCGCAACCGACGGACATACGGTCATCTTGATTGAGCGCGTTGAAAGTATTTattcAGAAATGGCACAGCTATTGTTTCTTATAATTCTGTATGCTCTGCCATCTCTTGTTGTGGCCATGCATAATTCAACAACTGGAGGCTGTGCCATCATCCGTCCTCCCAGAGATGGAGGCATCCGCTACAGAGGCCTGACACAAGAACAGATCCGCAATGTGCAGATCCTACCAGTGGACTACGAGATAGAGTACATCTGCAGGGGGAACAGGGTCATAGTGGGCCCTAAGGTCAGGAAGTGCCTTCCCAACGGCACATGGACCGACATCACACTGCACAGCAGATGTTTGCTGCTGTGCCCTCGTGTGTGGACGTCCCTGGAGAATGGGAGGGTGGCGCTGAAGCCCCCTGGGCCACCGGTGGAGGGCACCGTGCTGCACTACAGCTGCCATGCTGGCTTCATGCTGGAGGGCAGGAACATCACACACTGCACCAAGCTGGGCAAATGGGACTCACCCAAACCTGTCTGCCTCTATGACAGAAACTACAAAGGCAAGAAGAAACTCTACATCGGAGCTCTCTTCCCCATGAGCGGCGGTTGGCCGGGCGGCCAAGCATGTCTCCCCTCTGCGCAGATGGCTTTGGATCTGGTGAACAACCGGACGGATATTCTGCCGGATTACGAACTGGAGTTGATATACTATGACAGTATGtgtgacCCGGGTGAGTCCACCAAGTTGCTCTATGATCTGCTCTACACAGAGCCCATCAAGACTGTCCTGATGCCCGGCTGCAGCTCCGTATCCACACTGGTAGCAGAGGCTGCTCGCATGTGGAACCTCATAGTGTTGTCCTATGGCTCCAGCTCTCCAGCTTTGTCCAACAGGAACCGTTTCCCCACCTTCTTCCGCACCCACCCCTCGGCCACCCTCCACAACCCCACCAGGGTACGCCTCTTCCAGAAGTGGAAGTGGACCAAGATCGCTACCATCCAGCAGACCACAGAGGTCTTCACTTCGaCTCTGGATGATCTGGAGCAGAGGGTGAAGGAGGCTGGGATTGAGATCAGTGTGAGACAGAGCTTCCTCACCGACCCGGCTGTCGCTGTCAAGAACCTCAAGCGTCAAGATGCCAGAATAATTGTGGGGCTCTTCTATGAGACGGAAGCCAGGAAAGTGTTTTGCGAGGTATTTAAGGAGAAACTGTATGGGAAGAAATATGTCTGGTTTCTGATTGGCTGGTATGCTGATAACTGGTTCAAGATCAAAGACCCGTCCatcaactgcaccatcgagaacatgaCAGAGGCGGTGGAGGGCCACGTTACCACGGAGATCGTCATGCTCAACCCCGAGACCGTCCGCGGAGCCTCTAACCTGACCTCTCAGGAGTTCCTGGGGGCGTTGATGAACCGGCTGGGGGGTAAGAACCCGGAAGAGACGGGGGGCTTCCAGGAGGCCCCTCTGGCCTACGACGCTGTCTGGGCCCTGGCCCTGGCCCTCAACAAGACTGTGGCCCCTCTGAAGGCCAAAGGTCGCAGGCTGGAAGACTTCAACTATAACAACCatgacatcacagcagagatCTACCGCGCCCTCAACACCAGCTCATTTGAAGGCGTGTCTGGTCATGTGGTGTTTGATGCCCAGGGTTCCAGGATGGCGATGACCCTTATTGAGCAACTGCAAGGAGGCAGTTACAAGAAGATTGGATACTACGACAGCTCTCAGAAGAATCTCTCCTGGTTCGGCAACGATGTGTGGATAGgtgCCGGGCCCCCGGCTGACTCGACAATAGTCATTGAGGAGTTTAGGTACCTCTCTCAGAAGCTGTTTGCTGCCGTGTCTGTCTTCGCTGGTCTGGGCATCCTGCTCGGCATCGTCTGTCTGACCTTCAACATCTACAACAGCAACGTGCGGTACATCCAGAACTCCCAGCCCTACCTGAACAACATGACGGCAGTGGGTTGTATGATGGCCCTGGCTGCTGTGTTTCCCCTGGGGATCGACGGACACCACATCCACAGGTCCCAGTTCCCTGTGGTCTGTCAGttccgtctgtggctgctcggcctgggcttcagtctggccTATGGCAGCATGTTCACCAAGATTTGGTGGGTACACAATCTCTTCAcaaagaaggaggagaagaaggagaagaggaagCACCTGGAGCCATGGAAACTCTATGCAACAGTTGGAGTGTTACTAGCCATAGACGTCCTGTCACTCATGATTTGGCAGATTGTGGATCCATTACACATCACAGTAGAGAAGTTCACTAGGGAGGCCCCTAAAGGAGACTTGGATGTCCTGATTCAGCCCCTCCTGGAGCACTGCACTTCAGAGAAGATGAACACATGGCTCGgtgtagtgTATGGCTACAAGGGACTGCTGCTGTTGCTGGGGATATTTCTGGCCTACGAGACCAAGTCTGTTTCCACGGAGAAGATCAATGACCATCGAGCCGTGGGGATGGCTATTTACAACGTGGCTGTGTTGTGCATGATCACGGCTCCCGTCACTATGATCCTCACATCACAGCAGGATGCTTCCTTTGCCTTTGCCGCTCTGGCCATAGTGTTCTCTGTCTACATCACCCTGGTGGTGCTCTTTGTGCCCAAGatGCGCAGGCTGATTACACGTGGTGAGTGGCAGTCAGAGCAGCAGGACACGCTGAAGACCGGCTCGTCCACCAACAACAACGATGAGGAGAAGTCTcgccagctggagagagagaaccGTGAACTTCAGAAGATCATACAGGAGAAAGAGCAGAGGGTATCGGAGCTCCGCAACCAGCTGGTTGAGAGACAGGCCCTGCGCAACCGACGACGGCCCTCATCCGGCACCAACCAGAACCACAGCAACTCGTCCCCGCCCTCTTCCCAGCCAGACCCCAAGTCTCTCCTGCCCCCACCCGGTTACCCCAACCCCGCGTCGGACAATCACTCCTCCTTACCCCCCTCCTTCTCCAACTCCTCCAACCTGTACCAGGCGGACAGCAAGATTAGTCGCAACCACTGTCACAACAGCCAGATCCCCCTGCTCTACAAGTGAAGGGGGTGGGGTGCTAGAAGAGCCCAGAGCGCACGGAGGAACGAACACATATGGAGGCACGGTGACTTTCACTTGTTATGGAAAAAGAGCACAAGCTACTGATATTGACAGAGTGAGTGGAGGCACACGACGGCAGAGGACTTTTCCATTCACTACAGGCTGCTGTGAGGCGAGTCACCCGGGGTAACACCAGTCTTTCTCACAGTCTATCTCACTGTGGGGACCTGAAGCACTTGTGACTAGCAATATGAGTTATTGAATAAGAGACAAGCACATCCCAGAGTAACCCTCAGTCTACTTGTGGAGACAAAAAATGGACAGATCTCCCTTTTTCATTCCTCttctttcctccttccctctgtttGTTTTCTCGTTCTGTTGTGCAGATGTATCTAGGATCTCCGGGAGGActttgtgtactgtgtgtgtgtttgctcctTTTTGACTCCCATCTCTGCCTATTTGTCTTCTGTTTGTTGAAATAGCGAAGCACATGGTAATTGATTAATATTGTTATTACATAATGTATGATATATTATGTCATGGATTCAATGTTGTGCCCTATATTtagttcaatatatatatatatttttttggggggggggtggaaatTGTTCAGATGCAATGATAGTGGGGAAAAAACAGCAGAGTTTCCCAGTGGATTCAATTGACTGGATTTCATATCAAAACGCCATCGAAACTCAAAGTGTAAAGTCATCCTAACTGGGTTTTGGAATGGACAATCCCTCCTTTTGGGACAATAGCAAGATTTTTGTGGATGTTTTGCTGTATACATATTTAGGTACAGCTTTGTATCTTCAATCACATGTTTTCTGTTGTATCCGCTTGAATAGATGAAACCCATTTGATAAGAAAACGGTGTCATGTGATATGTAACCTAATCCGTTTTCTATGTACCATCCTTTTGAACGTTTTCAATTGGACTTGAATGGATATGTTCCCGACATTTCGAAATTTTCTTGGACACCTCATAGATATTGAATGGAAGCCCACCCTGCTGGAGACTTGAAGTGGCATATTTATTATGCATCATTCTTCCTTGCCTTTTAATTTTCTTTGTCAATAACTGTTTTTCCTTAAAGACAATCTGAATATAAATGTAAATGTGAGTGTACATGCCTGCCACCCGTTGGTCTTATATTTGACGTTTCTTCCGAAGTTCCCCTCCGATTTTAGCTTTGTACAACCACGTTTGTGAACGTGACGACGAAGAATATATGTAACGGTTTTGTAAAGGATTCTGACATGCGTATACGACAGTTAATATATATGTGCAATCCCA

Function

NR:

description
PREDICTED: gamma-aminobutyric acid type B receptor subunit 1-like isoform X2

GO: NA

KEGG:

id description
K04615 GABBR; gamma-aminobutyric acid type B receptor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036973530.1 True 4999 mRNA 0.49 24 26475098 26524060

Neighbor

gene id symbol gene type direction distance location
trnaa-ugc-3 NA coding downstream 13176 26461849 ~ 26461922 (-)
LOC110503977 bag6 coding downstream 50733 26408484 ~ 26424365 (-)
LOC110516029 ankmy2 coding downstream 73201 26396816 ~ 26401897 (-)
LOC110516015 LOC106582291 coding downstream 82916 26389811 ~ 26392182 (-)
LOC110515999 LOC106582287 coding downstream 87647 26351160 ~ 26387451 (-)
LOC110516068 LOC106582335 coding upstream 319 26524379 ~ 26533272 (-)
mgat1a LOC106582341 coding upstream 9584 26533644 ~ 26536641 (-)
LOC110516135 LOC106582343 coding upstream 17654 26541714 ~ 26547841 (-)
dhx16 LOC106582345 coding upstream 24030 26548090 ~ 26567630 (-)
LOC110516190 fli1 coding upstream 84092 26608152 ~ 26621798 (-)
G240384 NA non-coding downstream 1055 26473769 ~ 26474043 (-)
G240371 NA non-coding downstream 8244 26466435 ~ 26466854 (-)
G240348 NA non-coding downstream 31874 26415402 ~ 26443224 (-)
G239939 NA non-coding downstream 104107 26370752 ~ 26370991 (-)
G240402 NA non-coding upstream 14866 26538926 ~ 26539245 (-)
G240403 NA non-coding upstream 15484 26539544 ~ 26541140 (-)
G240383 NA non-coding upstream 43634 26567694 ~ 26567971 (-)
G240412 NA non-coding upstream 48944 26573004 ~ 26573783 (-)
LOC110515750 LOC106582146 other downstream 650341 25822812 ~ 25825108 (-)
LOC110515384 LOC106582009 other downstream 1238731 25171287 ~ 25236536 (-)
LOC110515208 LOC106581894 other downstream 1508890 24936516 ~ 25052970 (-)
LOC110515154 LOC106605289 other downstream 1704775 24767049 ~ 24799511 (-)
G237832 NA other downstream 1953554 24521219 ~ 24521544 (-)
G240409 NA other upstream 45041 26569101 ~ 26569522 (-)
G240464 NA other upstream 150532 26674592 ~ 26675033 (-)
LOC110516631 LOC106582601 other upstream 546995 27070914 ~ 27097259 (-)
LOC110516667 LOC106582624 other upstream 588122 27111084 ~ 27127488 (-)
LOC110516678 LOC106605187 other upstream 631508 27154680 ~ 27159987 (-)

Expression


Co-expression Network