LOC110516068 (LOC106582335)


Basic Information

Item Value
gene id LOC110516068
gene name LOC106582335
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 26524379 ~ 26533272 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036973531.1
caactcaatattaggagtgttaggtatactcagtgtatatatttttctatttaatGATCTCCACCTCACATAAGGCTACTAAATATTGAACAATTTAAACAATTGACCCGCTCCCCAAAACACGTGTAAATaatggactataaattgtgcctaaCTGTATTATACTTATCCTAAAAGTATAATACTTAGCCATTTACTTTGTGGTCGTATTCTTATCTTCTATTATTGTCGAGAAGGAACGTGCAAGTAAGACGAGGCATGGCTACGGAACCAGTAAGAGTTCAAACCAAAAGACGAGTAACTGGCTAGAACACAGCTAGTTGGCTAAAAAGAAAAGCAAAGCTACCGTTATTTGGTTAGCTTGCTAACTGGGCCTGGAATGGAGCCAGGAGATTTGCGTGTGAGCCCAGCCGGCTCAGGAGACCCCGAAGTGGGCGAATGGAGGCAAGAGACCCCTGGTGGGGATGCTGAGGTGAAGGGTGGGGAACAAAATGACAAAGAAATTAATGGAGATGCAGCTGAATCGGTGCTCAAAGAGAAAGACACCTTCGAGGGAGAAGAGTGTAAAGAGAAGAACGAAGGTGAACTGCACAGCCCATATGAAGAGGAATTGGATCCCAGAATTCAGGAGGAGTTGGAACACCTCAACGAGGCCAGTGTAGAGATCAACCAACTAGAGCTGCACTTGGATGATGCCAGATCAGGTTACAGGAAGATCCTCACAGACTCAGCCAGAAAACTGAACGCCCACAGCTCCCAGCTTGGTACCTGCATCGAGAAGGCCAGGCCCTACTATGAGGCTCGTCGACTTGCCAAGGAGGCTCAGCAGGAGACCCAGAAGGCAGCGCTGAGCTATGAACGGGCCGTCTCCATGCACACGGCTGCCAGGGAGATGGTGTACGTGGCAGAGCAGGGCCTCATGGCTGACGGCAGGAACACCCTGGACCCCACCTGGCAGGAGATGCTCAACCATGCTACCTCCAAGGTGAACGAGGCAGAGGAGGAGCGCCTACGCAGCGAACGGGAGCACATGCGTGTCACCCACTCTTGTCAGACGGCAGAGGCTCGAGTCCAGACCCTGCAGAAATCTCTCAAGAGGGCCATCATTAAGTCCAAGCCTTACTTCGAGCTCAAGGCCCAGTTCAACTACATACTTGAGGAGCATAAAACCAAAGTGATGCAGCTGGAGGAGCATGTGACCAAAGTGAAAAACCGCTACTCTGTCGCCCTGCACAAACTGGAGCAAATCAGCGAGGCCATTCACGCTCAGAGGGGACGGGACCATATGGAAGATGGACAAACCATGGCCTGTGGTGGGCGGAGTCCCCCTATTGGGGCGGAGTCggacagtgtggtgtgtggtgccgAGGGCGGGGCATGTGGAGGAGGGGCAATAGAGACTGACAGGATGGACATAAGCGGAGTGGTGGATAAGAAAATTGGGCTGGTGGAGAAATACAGGGAGAACGGGCGAGAGAGGCCCgagacacatggagagagagcagggtcaGATTCCCTCTCCGTCTTCAGTCTGCAGACCATCGCTTCTGACCTGGAGAAATGCGATTCCATCGAACACCTCGGGGAATTTAGCGATGTGGGCAGTCTGCctggggaggatggagagattgagagggaggagagcgggggagggagggaaagagaaagaagggAAGGACAAATGCAGCGCCAACAGCAGTTCCTGAAGCAACATCACAGGAGCTTCAGCTTGTGAGACCTGTCCTTCTCGCTTATAGTTTATCAATTGAAAAGAAAACAAGTGTCCGGTCTAGCTAGCTCATTATCCTGGCAAAGAGAGCAGATCTGATTTTCCTATCTAAAGTAACACATTTAAACGGGTGTATGATACTACGTAGTAATGAAGAACAGGTACGCTGACAAGTAAGACCTGACATTATAAGGAACCTGACAGGTTTTGCATCGTATTACAACACTACTGAAACTCCTAAACCGTACATGCCTCTGAGATTAGCTGCTTTACTTCCCTTATTCTGGCAATAAGGAAACCTTAGACAGGTATGTCCTAGTGCATGAAGGAACAATCCAAGTAAGAGACTACAATAAACGTGACAAACGGGGTCCCTATTCAATCTAAATGACGTAACTGAATTTCTGGTGTAAGTTAAAAACAATGTTCTTGTGGAACAAAAAAGTATGTGTGAATTCATATGCACGTCGAATCTAGATTTTTGTTTCACACTGTAAATATTGTTTATTTTAGTACATAAATTCAAACGTGTATTGCAAAAAGTGCTAGAAGAATTCGATttttaatatattattataataatttaaaaaaatgttttttttcataTTCTGGAAACCTGGTTTCAGGGTTCGAATCAAAAGGACCCCAAAACACACTAAAGAGGGTTACAAACTCCATTCTGACAACTTGTTTGATGACAGAAAGCACTCTGGACTATTTATTTGGACTTTTGTTATATGTATACTAGTATTCAGGGCTAACTAAAAAAATGGAGTAAATTGTTCATAAATGATCACGCTGACATAATATTATATTTGACTATTTTAAGCCCATCATTTTAAGATCCTATTGTttagtattttttaaataaaataatttcccAATATATTTCCCAATATATTGTTTATTTAGAGCCACCTGGGTCGTAAACTGAAATGTGCCTTGCCTTTGACACAGTACGACGCAAACAAAGACAGCATAGCACTGGCTGCAACAGCATACTGTTCAAATTTGTGTATACAGTATTAAACTGTGGTCAACAGTTGAGAAATACTCCCATGAAGGACATGCTTTTGACAATATGATTAATTTGAATAATCTATGAGTCATCCTAACACTGTTTTGTCTAGACTTgttctattttttatttgattaatttGAATATGTTGTCTGTGTactgctttggcaaagtggaggGTACAAGAAATGTATTCAATAGATTAAATGTAAGTTTGTGTATAATTACAACATTATAGAGAAACTAATGAAATGTACAAATGTATTTGAATGTCCTTGAATAGTTATTTTAAAGGGATCTTATTTTAAAGGGATCTTATTTTAAAGGGATCTTTATTTAATGCTGGTTATCTGCTGAATTCCTGATTTGACCTCCGTCTGTCCCGCTCTTTACATACTTCCAATAtatccatctcttcccctcattctctcaaccatagaaatagaatgactagtaATTGTATTTCTGTGCTTTCAACACTtcagtcattgtccatttgtctTCCTCTTTATTTATTCATAAAGTGGTGCAGTAGTGTCACCCAGCTATATAGTACAGTTCACTGTTGTTATTTACATGTATGCAATATCAAACAGTTAAACAATAAAATAAGAGGAATCTTGA

Function

NR:

description
SH3 domain-binding protein 5-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036973531.1 True 3371 mRNA 0.43 7 26524379 26533272

Neighbor

gene id symbol gene type direction distance location
LOC110503983 LOC106582320 coding downstream 319 26475098 ~ 26524060 (-)
trnaa-ugc-3 NA coding downstream 62457 26461849 ~ 26461922 (-)
LOC110503977 bag6 coding downstream 100014 26408484 ~ 26424365 (-)
LOC110516029 ankmy2 coding downstream 122482 26396816 ~ 26401897 (-)
LOC110516015 LOC106582291 coding downstream 132197 26389811 ~ 26392182 (-)
mgat1a LOC106582341 coding upstream 372 26533644 ~ 26536641 (-)
LOC110516135 LOC106582343 coding upstream 8442 26541714 ~ 26547841 (-)
dhx16 LOC106582345 coding upstream 14818 26548090 ~ 26567630 (-)
LOC110516190 fli1 coding upstream 74880 26608152 ~ 26621798 (-)
LOC110505173 NA coding upstream 103455 26636727 ~ 26637149 (-)
G240384 NA non-coding downstream 50336 26473769 ~ 26474043 (-)
G240371 NA non-coding downstream 57525 26466435 ~ 26466854 (-)
G240348 NA non-coding downstream 81155 26415402 ~ 26443224 (-)
LOC110515999 LOC106582287 non-coding downstream 150550 26351160 ~ 26387451 (-)
G239939 NA non-coding downstream 153388 26370752 ~ 26370991 (-)
G240402 NA non-coding upstream 5654 26538926 ~ 26539245 (-)
G240403 NA non-coding upstream 6272 26539544 ~ 26541140 (-)
G240383 NA non-coding upstream 34422 26567694 ~ 26567971 (-)
G240412 NA non-coding upstream 39732 26573004 ~ 26573783 (-)
LOC110515750 LOC106582146 other downstream 699622 25822812 ~ 25825108 (-)
LOC110515384 LOC106582009 other downstream 1288012 25171287 ~ 25236536 (-)
LOC110515208 LOC106581894 other downstream 1558171 24936516 ~ 25052970 (-)
LOC110515154 LOC106605289 other downstream 1754056 24767049 ~ 24799511 (-)
G237832 NA other downstream 2002835 24521219 ~ 24521544 (-)
G240409 NA other upstream 35829 26569101 ~ 26569522 (-)
G240464 NA other upstream 141320 26674592 ~ 26675033 (-)
LOC110516631 LOC106582601 other upstream 537783 27070914 ~ 27097259 (-)
LOC110516667 LOC106582624 other upstream 578910 27111084 ~ 27127488 (-)
LOC110516678 LOC106605187 other upstream 622296 27154680 ~ 27159987 (-)

Expression


Co-expression Network