mgat1a (LOC106582341)


Basic Information

Item Value
gene id mgat1a
gene name LOC106582341
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 26533644 ~ 26536641 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021594697.2
AAGGCAGGACTTCCGGTAAAAAAATTAGCTATCCGGAAGTCTGCACTCTTGTGTCTTGAGAAAACAAATGGCAGAAATGAAACTGTCGAAATGAAGTTCGTTTGATAATAAAAACAATCAAAATTAAAGTGTGACGACGATACATTATTTCATCTTCACTTACTTATTGATCCTGCATATTGTCATCGAAGAGGTTAGTGAAACGAAGGAAGAAATGGCTACAGAGACCGAATTCTACGTTATGAAACTGGAGATTGACAGGGAAGGTATGAACTGAAGACCAGCGCTTTCATCCCCTGACCAGCTCACCTACCTCCTGTCAAAGATGAATCCAGCTCTCCCTCAATTTTTCCCTCATTCCTTATACATATTCCTTGTCTTTTTTTGACTCAAGCTTTACCTAATTATGTTACCCTGTTTATGTTTTCATTACTTTTAATACAATATTTAAACTAACCAATTAACCTCTCCACATGTCCTTCTTGTGTTCTGCATTCCTTTGTCACAACTTATTTACAAACCCAGTCTTCCTAACTTCCTTTCCCTCGTAAGTTGTTTGGGCCATGCTCCGTAAGAGAGGTTCTGCTATTCTCTGTGGTGCTTTTCTCTTTGTCGCCTGGAATGCCGTCGTGGTCCTCTATCTGTGGGGCCGACCCCTGTCTGgtcgagaggagagggagatggatggaggacgAGGAGGGGCTGATTTGGCTGGGGATGTGATCCACATGGCAGAAGCCTTTGAGGCAGAGCTTGAAATGCAGAGAAAAATCCTGCTTCAGATACAGGGTCATCGGTCATTATGGGAACAACCCAATGAGAATGGCGCCAGCAGAGGTGGCCCCCCTCAAGTGGTCATTCCCATCTTGGTTATAGCCTGCAACAGAGTTACTGTTAAACGCTGCCTGGACAAACTCATAGAGTACCGCCCCTCACCTGAACTCTACCCAATTATAGTCAGCCAGGACTGTGGGCATGCGGAGACTGCACAGGTGATTGGTTCTTATGGCAGTCAGTTAACTCACCTGAAACAACCAGACCTGTCAGATATTGCCGTGAAACCAGAACACAAGAAGTTCCAGGGCTACTACAAAATCTCCAGGCACTATCGTTGGGCTCTCAACCAGGTGTTCAACTCTCTTTCACATTCCTCTGTTGTTATTGTGGAAGATGATTTGGAGGTGGCACCAGATTTCTTTGAGTACTTCAGATCCCTTCACCCAATCCTGAAATCTGACccgtctctgtggtgtgtgtctgcctgGAATGACAATGGTCGGGACGGCTACGTCGACCCTGGTAAAGCAGACCTCCTGTACAGGACAGACTTCTTCCCTGGGCTAGGCTGGATGATGATCAAGGAACTCTGGATAGAGCTGGAGCCGAAGTGGCCTGGTGCATTCTGGGATGACTGGATGCGTCAGCCAGATCAGCGCAGAGATCGAGCCTGTATTCGACCCGAAATATCCAGAACTTTAACCTTTGGACGGAAAGGTGTGAGCCTAGGCCAATTTTATGACAAATACCTACGCTACATTAAACTGAATAGTGAATTTGTGCCTTTCACCAAGCTGGATCTGGCTTACTTGAAGGAGGAGAAATACAAGGAGATCTTTGAGAAGCAGGTTTACAGTGCGCCTTTGGTCAAATATGAAGAGGTCCAACGGGGACAGTTAAAAGGAGCGGGTCCATTTTGTCTACACTACTCAAGCAAAGATGGTTTCAAAGTGTTGGCCAAAAACCTGGGTGTGATGGAGGACTTAAAGTCAGGGGTCCCACGGACAGGGTATCGGGGAGTGGTCAGTTTCCTGTCAAGGGGAAGAAGAATCTTCCTGGcaccccctccaggatggagcaAGTATGACCCAACCTGGAGTTGATGACAAACACAAAGGACTGAAGAGGAAAGGGCTCTGCACATTACAGATAGTACTATGGCAACATAAGTGAGTCCAATGAATGACAGATGTGGACCTGGCTTTAAGCTATAGTGAGATTATGAGATGCCTATCCTCTATCTTCCATTTCTGATGTTTGATTTTTCTCCCCATACTCTCAGGATTTTTCATActcaaataaatatatttttgcaaTGTGGAGTTGGGATAGTAGGGTAGGTACCGATGTCATTATTTTCAgagatttattttttatatactcTAATCATGCACATGAAATTCAATGCAACATCCACTGTGATTATTCTCAGTCTTGTAAGCAATTTCTGGGAGACTATCTTTTACTAATCTATGTCAGATGAAAAATATATTATCTGTGGTGTGTTCAATAATGGTGGTGGTCAACTAGTGATTGGTCCTAAAGTATTGCTTCACAATATTTAGTTAATCTTTTGGAGAACTGTTTTGACTATTTTTAACCTGGTTATAATAATGCTTAATGTTTTTCCCCAAAGAGACGGCTACTGAAGTGTGTATTTATTTAAATGCAAGATACACATCACAAATGCTGTATGTTATGTACTTAAGGAATTAAATTCTACCAATCGACTG
>TU274707
CGGAAGTCTGCACTCTTGTGTCTTGAGAAAACAAATGGCAGAAATGAAACTGTCGAAATGAAGTTCGTTTGATAATAAAAACAATCAAAATTAAAGTGTGACGACGATACATTATTTCATCTTCACTTACTTATTGATCCTGCATATTGTCATCGAAGAGGTTAGTGAAACGAAGGAAGAAATGGCTACAGAGACCGAATTCTACGTTATGAAACTGGAGATTGACAGGGAAGGTATGAACTGAAGACCAGCGCTTTCATCCCCTGACCAGCTCACCTACCTCCTGTCAAAGATGAATCCAGCTCTCCCTCAATTTTTCCCTCATTCCTTATACATATTCCTTGTCTTTTTTTGACTCAAGCTTTACCTAATTATGTTACCCTGTTTATGTTTTCATTACTTTTAATACAATATTTAAACT

Function

NR:

description
PREDICTED: alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase-like

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0000139 Golgi membrane cellular_component
GO:0008375 acetylglucosaminyltransferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021594697.2 False 2510 mRNA 0.43 3 26533644 26536641
TU274707 True 421 lncRNA 0.37 2 26535842 26536608

Neighbor

gene id symbol gene type direction distance location
LOC110516068 LOC106582335 coding downstream 372 26524379 ~ 26533272 (-)
LOC110503983 LOC106582320 coding downstream 9584 26475098 ~ 26524060 (-)
trnaa-ugc-3 NA coding downstream 71722 26461849 ~ 26461922 (-)
LOC110503977 bag6 coding downstream 109279 26408484 ~ 26424365 (-)
LOC110516029 ankmy2 coding downstream 131747 26396816 ~ 26401897 (-)
LOC110516135 LOC106582343 coding upstream 5073 26541714 ~ 26547841 (-)
dhx16 LOC106582345 coding upstream 11449 26548090 ~ 26567630 (-)
LOC110516190 fli1 coding upstream 71511 26608152 ~ 26621798 (-)
LOC110505173 NA coding upstream 100086 26636727 ~ 26637149 (-)
LOC110516273 NA coding upstream 110384 26647025 ~ 26649990 (-)
G240384 NA non-coding downstream 59601 26473769 ~ 26474043 (-)
G240371 NA non-coding downstream 66790 26466435 ~ 26466854 (-)
G240348 NA non-coding downstream 90420 26415402 ~ 26443224 (-)
LOC110515999 LOC106582287 non-coding downstream 159815 26351160 ~ 26387451 (-)
G239939 NA non-coding downstream 162653 26370752 ~ 26370991 (-)
G240402 NA non-coding upstream 2285 26538926 ~ 26539245 (-)
G240403 NA non-coding upstream 2903 26539544 ~ 26541140 (-)
G240383 NA non-coding upstream 31053 26567694 ~ 26567971 (-)
G240412 NA non-coding upstream 36363 26573004 ~ 26573783 (-)
G240431 LOC106582366 non-coding upstream 68566 26605207 ~ 26605715 (-)
LOC110515750 LOC106582146 other downstream 708887 25822812 ~ 25825108 (-)
LOC110515384 LOC106582009 other downstream 1297277 25171287 ~ 25236536 (-)
LOC110515208 LOC106581894 other downstream 1567436 24936516 ~ 25052970 (-)
LOC110515154 LOC106605289 other downstream 1763321 24767049 ~ 24799511 (-)
G237832 NA other downstream 2012100 24521219 ~ 24521544 (-)
G240409 NA other upstream 32460 26569101 ~ 26569522 (-)
G240464 NA other upstream 137951 26674592 ~ 26675033 (-)
LOC110516631 LOC106582601 other upstream 534414 27070914 ~ 27097259 (-)
LOC110516667 LOC106582624 other upstream 575541 27111084 ~ 27127488 (-)
LOC110516678 LOC106605187 other upstream 618927 27154680 ~ 27159987 (-)

Expression


Co-expression Network