LOC110516135 (LOC106582343)


Basic Information

Item Value
gene id LOC110516135
gene name LOC106582343
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 26541714 ~ 26547841 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021594722.2
ATGTTTTTCTACCAGTACCATGTAAATCCTGGGATCACAGTTTGTTAGTTGAAGTATGTTTTTTGGGTTAAGATTTTCTGGGATTAGCCCATTTCAAACAACTGAAGCGTGATGGGATTTTAGGATTATGTGCACATTAGTTTGACTGTAGTGGCTTCGAGAATGTTTTCAACGGAATGAAATTATTTAGAAGGGTAACATTCTGGCTGACGTGCATTGGACTTTTGAACGTAATGTCATAGAAACCGCAGAAGAGTCTCCTGCTGTAGTTAGTAGGTTGTTTGTATTTTTCTGTGAGGTTTACAAAATGAAATGAGAAATCAGGATTACATGCACTTCTATGGCTGATTTTTCAACCCTTTAAACATCAGTTTACCTAAAAGGGCTTAGTGAATGAAATGATTTACACATTTTTCGTTCTGGGTGAGGTTCAATGGACCTCAATGTTTTCATATAAAGTGCATAATGGGGTTGCTGAACCATTTCAGATAGCCTTGAGTGCTTTTGGGTGAATCCTGTTTACCTTGTCATTATGGTAAACCTGCATGTGAAGCTTTAGTCTAATGCCAGGAAACACTGTAGGTATGACACGTAAGCATCATGACATGAGTTGCAGTGCATTGGACAGGTCGGTGCACTGCTTCAAGAGCCTTGTGGAGTTTTCCATGCAGCCGATCACTTCCCTGTCCAACAGCAGACAAGGAaacaaacacattccacattctaGTCTGTAGAATGTCAAACGTTCATTTGGAATGTGGGATTTAAAGGTAGATGATAAACAACTGTAGTGGCCATTAGAAATAAATGAGCATTAAGGACATTTGAATACAGTTTATGTGAAGATTGACATGTCATGAAAGCTTCAAATGTTTACACACGCAGACATGGAAAACACTATCTGACAGCGGTACCCAGACTACCCACATTACAGTTCTACAGGTTCCAGGAACGATGTACAAATACACACAGAGATACAAAAACACCCACGATAACAGTTTAACCTCACATTTCACAGACGCACACAAACTTGAGGCAGTGGTTTAATGCCAAATAAACTGGTACAACTGGTCAGACGAGAGGGAGCGAGACACCGCAGATGTAaaagggagggatgaaggaggaaATACCATACacagattgacagagagagaagggaaaggagagaaatGAACAGATGGGGAAACTGGAGGGGTAAGGTCCACTTAGCATGTTAGTGTCTCAATGGAGATGCAAGGGACTCATTGAATGGGATATTCTCCACTGGGAAAGTACTCTCTGAAGGACCATCTCTGACAGACTGGTACATGTCAGCTACCGCCACAGCTCCTCTGGAGAGACGTGAGAAACCAGAACCTCACGTCACTCTCCATCTGATTCCAGCCATCACAGCTACGTCTACCACAGCACCTCCACCTGCCTCTATCCACCATGAGTGACGACAGGGAAAGACAGGGTGCCGATGGAGGCTACGGGGTCGAACAGCCGCCCAACGTCAAACCCAAACCTGACAGCATCAAGAAGGAGAAAAAGGAGAAATCCACCAAGGTGCGTAGGTCCATGAGCACTGACtccgagagaggagagggatctgggagaaggagggagagaaagagagacaaagggtTGAGGAGGGAGCGTGGTAGAAGTGAGGAGAACAGGAGGCAAGACAGGGCTGGAGATGACAGCAACCAGAAGGAGTCTGACCCCCAGGAAAACGACATGGAGGACACTGAGTGCGTGGTTTGCTTCTGCGAATACGACAACGTCTTTAAAACCCCCAAGCTGCTCTCCTGCGGGCACACGTTCTGTCTGGAGTGCCTGGCCCGGATCAACGTCACCTCCTTAGAGCTCAAGTCTCTTTCCTGCCCTGTGTGTCGAGAGCTCACCAAGCTGCCCCATGGCCGCAACCTGCCCCAGCTGGGCAACAACCAGGACATCTTCCGCAAACTCCCTCCAGAGATGCAGAGGGCGCTGTCCGTGCGCTTCAAGCGCAGCAAGGGCAAGCTGGTCCTCAAGAAGCCCCCTCCTGGTACTACCAGCCTGGCCATGTCCAGCCTCACCCTGCCCACTCTCAAGAAGCAGGACCCGCAGGCCTCCAGCAACCTCCAGCTGGGCACCATAGATCAGGGCCTCGCCACTGTCGTGGACGTGGGTCGCCCCCCTAGCAGGGTCAGAGGTCGCCTGCGCAGGATGTTCCGCTCGGACCAGTGCTACTACACCGTGATGGCATCCATCGTCACCATCACCGTGGTGCTGATGCTGATGGGCATCCTGGCCTTCATGGTCATGCCCAATGTGGTTCTCCACAACGGCAGCAAACCCAACCAGGGGAATTCCAGCCAACCATAACCAGGTGGTCAAATACCCTGAGGAAAAGACGGGATGGTGGTGGGATGAAGGGAAGTAATACCAGAGGAGAGAATCACTCAGATATTTTCAGAGGACTAATATTGTCAGGGATCCTAATATCTGCCATTTCATTTTCTTTACTAATACTCAGTTATGAAGAAAATGTGAATTAACTGAAAAGAAAGGTGACCCTGAAAGCACTAGAGAACACTCAACTGGGGTCAATACATAACAAGGACCATGTTGTTTATGAAGGACTGACGCACAAGAAGTACTAATGGGAAAAGTGTCGCAAGAGTTATTTTTTATCCACCATGTTGTCTTCCTTCCTGCAGTATAAAGATCATGAACATGGAACATTTACCCAAATGTGAACGGGACAGCTATTGCGGTGAAGTCAGAGAGGACAATTAATGTTGCCTGGggaaatgtaattcattataaaGTTGTGTACTATGTAATTGCACTGAAGTCTGCCGTGGAGAATTATTACAAGTAAGAGATTATTTGATTACACTGAGCATTATCTTATTCTTTACATTGCAAAGTAAAAATGCTCAGCTCAAGattttgttttacattcattgATGTCTAACTAATGTATATTTACGTACAAAATATGAATATACATATAGAGTTCAAATAAGAATGATACAATGGAATAGGTCTCTCTTGTCATAGCAGAGGTATCCTACCACACTGAAATGAATTACATTTCCAATAGACCCAGTGCCATGTTACATGCACGTTGCACGTACATACACGTTGCCTTACAGTAAAACCAAATGTGCTGATTTGATTTCTGATAAGATCTTTGCCTATCGGTACCTTGGTTGCACCTTCCTCTTTTAGTCCCATTAGAGAATAATTTTATTTTCGTTTTTATACTATTTCCTGAcaggttcagtgtgtgtgtgtgtgtgtgtgtgtgcgtgcgtgcgtgcgtgtgtgtgtgtactgttttaACATTTTACTGAAAGCTacactatacaaaacattaacaacacctgCTCTTGCAATTACATATACTTACCAGGTGAATTCaagtgaaatctatgatcccttattgatgtcacttgttaaatccacttcaatcagtttcGATAACGGGAGAAGACTGGTTAAAGAAGGgttttgaagccttgagacatggattgtgtatgtgtgccattcagagggtgaatgggcaagacaaaggatttaagtgcctttgaactgggtatggtagtaggtgccaggcgcaccggggtgcaactcaatattaggaagatgttcctaatgtttggtgtatGTATCAGTGAAACAGTGTCACTCATGACTAGTTTTAGTTGCAGTAGCTATGTTTTCCATTCTATGGTTGTCAGTGTGACAGAAAAACCTCTTACAAGGCACCTTGCATGCAAATATTTCATAATGGAAAGGAGGCAGTGACATTTGACAGCATGACTAAGTGTATGTGTTGTGTAACATGCAAGCGTTTTATTAATTGTTTAAGGAATATGCTCTTAATCATTAAAATATAAAGTTTGAACGGTTA

Function

NR:

description
probable E3 ubiquitin-protein ligase RNF183

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021594722.2 True 3889 mRNA 0.44 2 26541714 26547841

Neighbor

gene id symbol gene type direction distance location
mgat1a LOC106582341 coding downstream 5073 26533644 ~ 26536641 (-)
LOC110516068 LOC106582335 coding downstream 8442 26524379 ~ 26533272 (-)
LOC110503983 LOC106582320 coding downstream 17654 26475098 ~ 26524060 (-)
trnaa-ugc-3 NA coding downstream 79792 26461849 ~ 26461922 (-)
LOC110503977 bag6 coding downstream 117349 26408484 ~ 26424365 (-)
dhx16 LOC106582345 coding upstream 249 26548090 ~ 26567630 (-)
LOC110516190 fli1 coding upstream 60311 26608152 ~ 26621798 (-)
LOC110505173 NA coding upstream 88886 26636727 ~ 26637149 (-)
LOC110516273 NA coding upstream 99184 26647025 ~ 26649990 (-)
LOC110516285 LOC106582421 coding upstream 143897 26691738 ~ 26715464 (-)
G240403 NA non-coding downstream 574 26539544 ~ 26541140 (-)
G240402 NA non-coding downstream 2469 26538926 ~ 26539245 (-)
G240384 NA non-coding downstream 67671 26473769 ~ 26474043 (-)
G240371 NA non-coding downstream 74860 26466435 ~ 26466854 (-)
G240383 NA non-coding upstream 19853 26567694 ~ 26567971 (-)
G240412 NA non-coding upstream 25163 26573004 ~ 26573783 (-)
G240431 LOC106582366 non-coding upstream 57366 26605207 ~ 26605715 (-)
G240432 NA non-coding upstream 57938 26605779 ~ 26606214 (-)
G240445 LOC106582385 non-coding upstream 80433 26628274 ~ 26630084 (-)
LOC110515750 LOC106582146 other downstream 716957 25822812 ~ 25825108 (-)
LOC110515384 LOC106582009 other downstream 1305347 25171287 ~ 25236536 (-)
LOC110515208 LOC106581894 other downstream 1575506 24936516 ~ 25052970 (-)
LOC110515154 LOC106605289 other downstream 1771391 24767049 ~ 24799511 (-)
G237832 NA other downstream 2020170 24521219 ~ 24521544 (-)
G240409 NA other upstream 21260 26569101 ~ 26569522 (-)
G240464 NA other upstream 126751 26674592 ~ 26675033 (-)
LOC110516631 LOC106582601 other upstream 523214 27070914 ~ 27097259 (-)
LOC110516667 LOC106582624 other upstream 564341 27111084 ~ 27127488 (-)
LOC110516678 LOC106605187 other upstream 607727 27154680 ~ 27159987 (-)

Expression


Co-expression Network