LOC110516190 (fli1)


Basic Information

Item Value
gene id LOC110516190
gene name fli1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 26608152 ~ 26621798 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021594751.2
TTGTTAGAGTGACTTCACTTCCCAatttagagtgagagagagagaaaaaagctgCCATCCGGTTATGGACTAAGCAAGAATTGTTGCTGCAATGGTTTGCGCCAAAGGGTAAATGCGCTTGTGTATGGGTTGATGCGATTCAGTCAGGCTATCCAGACTAGTTATAACGTGTTTAAATGACTAAATGAGAATCAACGACTGAGTGACTGCTACAATGGACTGTACGATAAAGGAAGCACTGTCCGTGGTGAGCGAGGACCAGTCCATTTTCGAGTCGCCCTTCCCTGCCGCCACGACCATGCACATGAAGGGCGAGATGACGTCACCGGGAAGCTTCAGCCAGGCCTCCGAAGAGAGCCAAGAACCCACCGAGCCGGAGTGGGCCGGGCCGGGAGCACAGAACCCTGGGAAAAGAGGAGAGCACATCAACGGAACCAGTCGTGAGTCCCCTGTGGACTGCAGTGTGACCAAACGCTCCAGACACATGAGCAGCAACGAAGGGGGTCAGCTGGCCTACCAGGCCTCATACCCTGAGCCCCGCGCCAGCCCCCAGACCGCCACCACGCCCAACAGCgccacagaggagaagagagtcaTAGTGCCCGCAGACCCTGAGGTGTGGACCCAGGACCATGTGCGCCAGTGGCTGGACTGGGCCATCAAGGAGTACAGCCTGGAAGAGGTGGACATCATGCACTTCCACACACTGGAGGGCAAGGCCCTCTGCAAGATGACCAAGGAGGATATGATGCGCCTCACGTCCGCCTACAACACTGACATCCTGCTCGGCCACCTCAATTACCTCCGACAGAGCAGCCCTACTTTCTCCTACCCCACAACTCCAACCAACAACACACAGCAACAACCCAGACTACAGGTTAAATCAGAGAACAGCTATGAGGAGATAGGCAGAAGGAACAGCTGGTCATCGAACCCCATGCTGCCTGCAGTAACCAAAGGTTCTCCCATGGAGCACCAACACAGCACCAGAGTCACAGAGCCTCCGCCGAGAATTGTGCAAGACCCATACCAAGCATTAGGTCCCATCAGCAGTCGTCTAGCCAACCCAGAAGGCCAAGCCCTCCACTCCAAGAAACGAACAGGCAAACACAGTTCATACAGGCTGCCTGACCCCAGCGCTCACAGGcctgtggGCTCTGGACAGATCCAGCTGTGGCAGTTCCTGCTGGAGTTGCTGTCGGACAGCAACAACTCCAGCATCATCACCTGGGAGGGCAACAATGGCGAGTTCAAGATGACTGACCCAGACGAGGTGGCCAAGCGTTGGGGCGAGCGCAAGAGCAAACCCAACATGAACTATGACAAGCTGAGCCGCGCCCTGCGCTACTATTACGACAAGAACATCATGACCAAGGTGCACGGCAAGCGCTACGCCTACAAGTTTGACTTCCAGGGCATCTCACAGGCCCACCAGAGCCACGGCGGAGAAGGGGGCATTGTGAAGTACCAGACTGAGGTATCGTATGCCCAGCCCTACCACAGCCACCAGCCAAAAATTAACTTCATGAACACGCATGCCGCCCCTATGCCCGTGTCACCTGGGAACTTTTTTGGGCCGTCTACAACTTACTGGAACTCAACAACCAGCCCCATGTATCCGGGTTCTCCCATGCCAAGGCACCCAGGGACTCACTCCCACCTGAGCTCATACTATTGAGGTATGGGTGTCTTGCACTAGACTGGATGGCAGAGATTCCTGAAACAGACTGATAAAGATAACATCCACAATGTATCTGGTCTTTAACATCGAAGTTACATTGTAACGCTATGCGAGTTGTTAGTACAGAATGTAAAATGGACAATAACGCTCACGTCACATCTTCAAGCAGAGGCACCATAAGATAGGCAAAAGGAAGAGGGTAAACAATGATGacgagtagagaccaagggataGCCATGAAGGTTCTGCCTTTTTGAATTTCTCAACTATGGAAGCTGAGAATTTGTTCATATTATAGCCTGTGATTCAGTTGTTTGAAAACCATGTTTTTCAATTAGGTAAGTATTTTGTTTAAAAATGTCATTGAGGTCATTGAAGGACTTTAAGGGGAAAGTCACTGAGTGTGGGAAGTGCTAAAACTGTTATGAGGTCTTGATCGCAATTACTATATTCATCGatctaacatttgtaaaagtATCATTGTACAGAATGTGTCATACAATTGTAGCAATAAAACATTTACCCCTGTAGTAATGCTAATAAAAGGAACTTGTATATTTGA
>XM_021594761.2
GCGTTGTTAGAGTGACTTCACTTCCCAatttagagtgagagagagagaaaaaagctgCCATCCGGTTATGGACTAAGCAAGAATTGTTGCTGCAATGGTTTGCGCCAAAGGGTAAATGCGCTTGTGTATGGGTTGATGCGATTCAGTCAGGCTATCCAGACTAGTTATAACGTGTTTAAATGACTAAATGAGAATCAACGACTGAGTGACTGCTACAATGGACTGTACGATAAAGGAAGCACTGTCCGTGGTGAGCGAGGACCAGTCCATTTTCGAGTCGCCCTTCCCTGCCGCCACGACCATGCACATGAAGGGCGAGATGACGTCACCGGGAAGCTTCAGCCAGGCCTCCGAAGAGAGCCAAGAACCCACCGAGCCGGAGTGGGCCGGGCCGGGAGCACAGAACCCTGGGAAAAGAGGAGAGCACATCAACGGAACCAGTCGTGAGTCCCCTGTGGACTGCAGTGTGACCAAACGCTCCAGACACATGAGCAGCAACGAAGGGGGTCAGCTGGCCTACCAGGCCTCATACCCTGAGCCCCGCGCCAGCCCCCAGACCGCCACCACGCCCAACAGCgccacagaggagaagagagtcaTAGTGCCCGCAGACCCTGAGGTGTGGACCCAGGACCATGTGCGCCAGTGGCTGGACTGGGCCATCAAGGAGTACAGCCTGGAAGAGGTGGACATCATGCACTTCCACACACTGGAGGGCAAGGCCCTCTGCAAGATGACCAAGGAGGATATGATGCGCCTCACGTCCGCCTACAACACTGACATCCTGCTCGGCCACCTCAATTACCTCCGACAGAGCAGCCCTACTTTCTCCTACCCCACAACTCCAACCAACAACACACAGCAACAACCCAGACTACAGGTTAAATCAGAGAACAGCTATGAGGAGATAGGCAGAAGGAACAGCTGGTCATCGAACCCCATGCTGCCTGCAGTAACCAAAGGTTCTCCCATGGAGCACCAACACAGCACCAGAGTCACAGAGCCTCCGCCGAGAATTGTGCAAGACCCATACCAAGCATTAGGTCCCATCAGCAGTCGTCTAGCCAACCCAGGCTCTGGACAGATCCAGCTGTGGCAGTTCCTGCTGGAGTTGCTGTCGGACAGCAACAACTCCAGCATCATCACCTGGGAGGGCAACAATGGCGAGTTCAAGATGACTGACCCAGACGAGGTGGCCAAGCGTTGGGGCGAGCGCAAGAGCAAACCCAACATGAACTATGACAAGCTGAGCCGCGCCCTGCGCTACTATTACGACAAGAACATCATGACCAAGGTGCACGGCAAGCGCTACGCCTACAAGTTTGACTTCCAGGGCATCTCACAGGCCCACCAGAGCCACGGCGGAGAAGGGGGCATTGTGAAGTACCAGACTGAGGTATCGTATGCCCAGCCCTACCACAGCCACCAGCCAAAAATTAACTTCATGAACACGCATGCCGCCCCTATGCCCGTGTCACCTGGGAACTTTTTTGGGCCGTCTACAACTTACTGGAACTCAACAACCAGCCCCATGTATCCGGGTTCTCCCATGCCAAGGCACCCAGGGACTCACTCCCACCTGAGCTCATACTATTGAGGTATGGGTGTCTTGCACTAGACTGGATGGCAGAGATTCCTGAAACAGACTGATAAAGATAACATCCACAATGTATCTGGTCTTTAACATCGAAGTTACATTGTAACGCTATGCGAGTTGTTAGTACAGAATGTAAAATGGACAATAACGCTCACGTCACATCTTCAAGCAGAGGCACCATAAGATAGGCAAAAGGAAGAGGGTAAACAATGATGacgagtagagaccaagggataGCCATGAAGGTTCTGCCTTTTTGAATTTCTCAACTATGGAAGCTGAGAATTTGTTCATATTATAGCCTGTGATTCAGTTGTTTGAAAACCATGTTTTTCAATTAGGTAAGTATTTTGTTTAAAAATGTCATTGAGGTCATTGAAGGACTTTAAGGGGAAAGTCACTGAGTGTGGGAAGTGCTAAAACTGTTATGAGGTCTTGATCGCAATTACTATATTCATCGatctaacatttgtaaaagtATCATTGTACAGAATGTGTCATACAATTGTAGCAATAAAACATTTACCCCTGTAGTAATGCTAATAAAAGGAACTTGTATATTTGA
>XM_021594756.2
AAAACGATACGCAGCCACCCACTGAGTTGTTTAGCACGTCTCTGAGTGAGAGAGGCAAAGCGGTGATGCGAGGTCCCCACTCTTTCCTTCTTGTACAAAATTTCCTCTTCCTTCCCGTTCGTGGTTGTATGTCGGCTCTTTAATAACACAAGTAACCACTACATCTTTGCACACCGATAAAAACGAAATGGTGTCCAGCACTGCACGCGTAAAAAGGGGCGCGCAAAACTCGCTATTTTAATTGTTTCGTTTAATCAAGTTTAATGCAGACGTTCCTGGGTTAAAAGCACATATGCTAGTTTAGAGAAAGTTCAAGGTGATTTAAAAAGAAGTGATGTACCTGTCCCAATTGATGATAAAGACGACACCTTTGAGGCACATTACACAGCATACAAGCAATCTTGATTAGTACAAGTTTATAGGAGCGCGCTCGTGGCAGGTGTCTTGGCGCCATGGAACGTATTTGGAGTAGAAGGCTACTTTCCATAGAGTTGGAGGATCGAAATCAATGAGATGACTGGAAGCACTGTCCGTGGTGAGCGAGGACCAGTCCATTTTCGAGTCGCCCTTCCCTGCCGCCACGACCATGCACATGAAGGGCGAGATGACGTCACCGGGAAGCTTCAGCCAGGCCTCCGAAGAGAGCCAAGAACCCACCGAGCCGGAGTGGGCCGGGCCGGGAGCACAGAACCCTGGGAAAAGAGGAGAGCACATCAACGGAACCAGTCGTGAGTCCCCTGTGGACTGCAGTGTGACCAAACGCTCCAGACACATGAGCAGCAACGAAGGGGGTCAGCTGGCCTACCAGGCCTCATACCCTGAGCCCCGCGCCAGCCCCCAGACCGCCACCACGCCCAACAGCgccacagaggagaagagagtcaTAGTGCCCGCAGACCCTGAGGTGTGGACCCAGGACCATGTGCGCCAGTGGCTGGACTGGGCCATCAAGGAGTACAGCCTGGAAGAGGTGGACATCATGCACTTCCACACACTGGAGGGCAAGGCCCTCTGCAAGATGACCAAGGAGGATATGATGCGCCTCACGTCCGCCTACAACACTGACATCCTGCTCGGCCACCTCAATTACCTCCGACAGAGCAGCCCTACTTTCTCCTACCCCACAACTCCAACCAACAACACACAGCAACAACCCAGACTACAGGTTAAATCAGAGAACAGCTATGAGGAGATAGGCAGAAGGAACAGCTGGTCATCGAACCCCATGCTGCCTGCAGTAACCAAAGGTTCTCCCATGGAGCACCAACACAGCACCAGAGTCACAGAGCCTCCGCCGAGAATTGTGCAAGACCCATACCAAGCATTAGGTCCCATCAGCAGTCGTCTAGCCAACCCAGAAGGCCAAGCCCTCCACTCCAAGAAACGAACAGGCAAACACAGTTCATACAGGCTGCCTGACCCCAGCGCTCACAGGcctgtggGCTCTGGACAGATCCAGCTGTGGCAGTTCCTGCTGGAGTTGCTGTCGGACAGCAACAACTCCAGCATCATCACCTGGGAGGGCAACAATGGCGAGTTCAAGATGACTGACCCAGACGAGGTGGCCAAGCGTTGGGGCGAGCGCAAGAGCAAACCCAACATGAACTATGACAAGCTGAGCCGCGCCCTGCGCTACTATTACGACAAGAACATCATGACCAAGGTGCACGGCAAGCGCTACGCCTACAAGTTTGACTTCCAGGGCATCTCACAGGCCCACCAGAGCCACGGCGGAGAAGGGGGCATTGTGAAGTACCAGACTGAGGTATCGTATGCCCAGCCCTACCACAGCCACCAGCCAAAAATTAACTTCATGAACACGCATGCCGCCCCTATGCCCGTGTCACCTGGGAACTTTTTTGGGCCGTCTACAACTTACTGGAACTCAACAACCAGCCCCATGTATCCGGGTTCTCCCATGCCAAGGCACCCAGGGACTCACTCCCACCTGAGCTCATACTATTGAGGTATGGGTGTCTTGCAC

Function

symbol description
fli1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific. Acts upstream of or within angiogenesis and positive regulation of DNA-binding transcription factor activity. Predicted to be active in nucleus. Is expressed in several structures, including angioblastic mesenchymal cell; cardiovascular system; hematopoietic system; mesoderm; and pharyngeal arch. Human ortholog(s) of this gene implicated in blood platelet disease and thrombocytopenia. Orthologous to human FLI1 (Fli-1 proto-oncogene, ETS transcription factor).

NR:

description
Friend leukemia integration 1 transcription factor-like isoform X1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09436 FLI1; friend leukemia integration 1 transcription factor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021594751.2 False 2243 mRNA 0.51 10 26608152 26621795
XM_021594761.2 False 2162 mRNA 0.50 9 26608152 26621798
XM_021594756.2 True 1984 mRNA 0.54 10 26608699 26621529

Neighbor

gene id symbol gene type direction distance location
dhx16 LOC106582345 coding downstream 40522 26548090 ~ 26567630 (-)
LOC110516135 LOC106582343 coding downstream 60311 26541714 ~ 26547841 (-)
mgat1a LOC106582341 coding downstream 71511 26533644 ~ 26536641 (-)
LOC110516068 LOC106582335 coding downstream 74880 26524379 ~ 26533272 (-)
LOC110503983 LOC106582320 coding downstream 84092 26475098 ~ 26524060 (-)
LOC110505173 NA coding upstream 14929 26636727 ~ 26637149 (-)
LOC110516273 NA coding upstream 25227 26647025 ~ 26649990 (-)
LOC110516285 LOC106582421 coding upstream 69940 26691738 ~ 26715464 (-)
LOC110505184 LOC106582443 coding upstream 107276 26729074 ~ 26736469 (-)
LOC110516341 LOC106582531 coding upstream 190668 26812466 ~ 26817929 (-)
G240432 NA non-coding downstream 1938 26605779 ~ 26606214 (-)
G240431 LOC106582366 non-coding downstream 2437 26605207 ~ 26605715 (-)
G240412 NA non-coding downstream 34369 26573004 ~ 26573783 (-)
G240383 NA non-coding downstream 40181 26567694 ~ 26567971 (-)
G240403 NA non-coding downstream 67012 26539544 ~ 26541140 (-)
G240445 LOC106582385 non-coding upstream 6476 26628274 ~ 26630084 (-)
G240450 NA non-coding upstream 16364 26638162 ~ 26638375 (-)
G240438 NA non-coding upstream 37273 26659071 ~ 26659348 (-)
G240456 LOC106582397 non-coding upstream 41197 26662995 ~ 26664067 (-)
G240458 NA non-coding upstream 45261 26667059 ~ 26667329 (-)
G240409 NA other downstream 38630 26569101 ~ 26569522 (-)
LOC110515750 LOC106582146 other downstream 783395 25822812 ~ 25825108 (-)
LOC110515384 LOC106582009 other downstream 1371785 25171287 ~ 25236536 (-)
LOC110515208 LOC106581894 other downstream 1641944 24936516 ~ 25052970 (-)
LOC110515154 LOC106605289 other downstream 1837829 24767049 ~ 24799511 (-)
G240464 NA other upstream 52794 26674592 ~ 26675033 (-)
LOC110516631 LOC106582601 other upstream 449257 27070914 ~ 27097259 (-)
LOC110516667 LOC106582624 other upstream 490384 27111084 ~ 27127488 (-)
LOC110516678 LOC106605187 other upstream 533770 27154680 ~ 27159987 (-)
G240906 NA other upstream 562862 27184660 ~ 27185105 (-)

Expression


Co-expression Network