LOC110516273


Basic Information

Item Value
gene id LOC110516273
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 26647025 ~ 26649990 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021594792.2
TTGGTGCGCTAAAACTGTTGGACATTCAAGACAGGCATGAATTCACACGGTCTAAAAATAGCATTGTAAATACAAACTCATACTGTGTAGACTAGAGTGTAGGCTGAAAACTGCATCGATAGCTTCTGTATGTATTTTTATTATTTGGGTAGTTTGAAGCAAATGAATAGGTAATGGACACCGATTAATTGATAGAGATCATACGTAAACTTCATTCCGTTTTTATCTGAACAGTTATCAATTGGAAATGTCAAACCAACTCTGATTAGGCAGAGATCAGAACTTGCCAGAAGAAGGTCGAAAAAGTCTTGATTAACAATGGCGAAGTTAACAACATAGCAACCTATTGGAAATTAGTTCACTCCGTTTCATGTCAGAAGAAACTCGTGGGGAGTAAagcaagaaaataaaaaaaggtgcATTTTGTTCTATTAATTTGCTGGAAAGAGTTCTAGAAGAAAAATGATAAAGCAGTTATAGACactcctggtctttgtgCTCCTCTTACTCTGCCTCTGGCACCATGATCCCCTGGTTACCCGAGTGCTACATTGTCATGGGGGCTATGCCGAGGTGGACTCCATGACAGAGGCGGTGGCCGGGGAGAGCTTCCTCATGGACTTCATCTCctgtaagaggagagaggaggtccAGGCCCATACCACGGTTGACTGGCACTTCAGAGccacaggagaggaggagtacaTCCGCATAAAGATCATGATGTACGTGCTGATCGTGGTGCTGCAGCTGTGGATGTTTGTGGTGCTGATCCACTGCTACAACAAGATCTGGGCTGAACACGAGGCGTGGGACGCCCGCAAAACCTTGAGGGCCCAAGAACTGGCCCTAATAAACGAACCTTTAGACTCAAAGGACAATTGTGATGGAGTGCTTCTGGAGTGACTTGTTACGGTAAACATCAAAGGTGGAGAACTCTGTCACAAGCAATTGTTACCACTACACTAGTAGGCTATTACATCATAGAAACATCATTTGAATGTCTTAGCATAGTGTGTAACACATGTGGTTTACAATGTACTTAATTTGCTGTACGAGGTAGTTGCAGCTGGCATGAGTGGTGATTAGATTGACAGGTGGTGCCGAACAGCCTTAGTGTGTCAACTCAACAGAGAATGTCATCACGTGATGGATCAACAGTTCTGACAAAGCTCTGATTACAGATGGTTCCACCTAAGCTACATAGAACGCTTTGGCAGGAACAACCATGCATCTACATAGATAGATCTCATCTACGACCATGTTGTTAAAGTTTATTAGAATCGCTTTGGTGCTATTTTCACAACTCTTAATCCAAAACTCCAAGCTGGTCACACTTATAATGCAGCAAGTCTTTCATTCAAAACCTGTCATTATGCATTCATTTGGATTATAAACATATCTCACCACAC

Function

NR:

description
sodium channel subunit beta-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021594792.2 True 1412 mRNA 0.42 5 26647025 26649990

Neighbor

gene id symbol gene type direction distance location
LOC110505173 NA coding downstream 9876 26636727 ~ 26637149 (-)
LOC110516190 fli1 coding downstream 25227 26608152 ~ 26621798 (-)
dhx16 LOC106582345 coding downstream 79395 26548090 ~ 26567630 (-)
LOC110516135 LOC106582343 coding downstream 99184 26541714 ~ 26547841 (-)
mgat1a LOC106582341 coding downstream 110384 26533644 ~ 26536641 (-)
LOC110516285 LOC106582421 coding upstream 41748 26691738 ~ 26715464 (-)
LOC110505184 LOC106582443 coding upstream 79084 26729074 ~ 26736469 (-)
LOC110516341 LOC106582531 coding upstream 162476 26812466 ~ 26817929 (-)
LOC110516351 LOC106605237 coding upstream 181186 26831176 ~ 26881042 (-)
LOC110516494 NA coding upstream 283388 26933378 ~ 26939575 (-)
G240450 NA non-coding downstream 8650 26638162 ~ 26638375 (-)
G240445 LOC106582385 non-coding downstream 16941 26628274 ~ 26630084 (-)
G240432 NA non-coding downstream 40811 26605779 ~ 26606214 (-)
G240431 LOC106582366 non-coding downstream 41310 26605207 ~ 26605715 (-)
G240412 NA non-coding downstream 73242 26573004 ~ 26573783 (-)
G240438 NA non-coding upstream 9081 26659071 ~ 26659348 (-)
G240456 LOC106582397 non-coding upstream 13005 26662995 ~ 26664067 (-)
G240458 NA non-coding upstream 17069 26667059 ~ 26667329 (-)
G240463 NA non-coding upstream 20638 26670628 ~ 26670901 (-)
G240472 NA non-coding upstream 49291 26699281 ~ 26699605 (-)
G240409 NA other downstream 77503 26569101 ~ 26569522 (-)
LOC110515750 LOC106582146 other downstream 822268 25822812 ~ 25825108 (-)
LOC110515384 LOC106582009 other downstream 1410658 25171287 ~ 25236536 (-)
LOC110515208 LOC106581894 other downstream 1680817 24936516 ~ 25052970 (-)
LOC110515154 LOC106605289 other downstream 1876702 24767049 ~ 24799511 (-)
G240464 NA other upstream 24602 26674592 ~ 26675033 (-)
LOC110516631 LOC106582601 other upstream 421065 27070914 ~ 27097259 (-)
LOC110516667 LOC106582624 other upstream 462192 27111084 ~ 27127488 (-)
LOC110516678 LOC106605187 other upstream 505578 27154680 ~ 27159987 (-)
G240906 NA other upstream 534670 27184660 ~ 27185105 (-)

Expression


Co-expression Network