LOC110516285 (LOC106582421)


Basic Information

Item Value
gene id LOC110516285
gene name LOC106582421
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 26691738 ~ 26715464 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021594796.2
TATAGCCTAGATAGCCTTCCGAAGACCTTGTCATTTCGCAGGCTCATCCGTTTTTTCCCTTCGGCGCTCTGGTCACCTATTCAATATCAAATTATGTTGAAAAATAGCCGGTTCGTATGCCTACTGTGGATATTATTTGAAAGTGCCTAGAATGAGAATCTTCGCGTATTTTTGCTGAACTGTGCCACGCTTCCCGCGCAGCGGCAGGTTTCTCTCAAACGCACCGAATTGCCTGGAAGGCAACAGTCGACACAAAACCTTGGAGTAGACGCAATGGAGAATTTAATCTAAAGAGGAACACATGGGGAAAGACACAAAGGAATAAGAGGGACCATACGTAAGGACAGATATTGCTCATAAACGCAGCATATCTTTTTCAAATGTGAAGTGGCCAGATGTGGAGAAAATCACGAATTTAATTCGGTTTTTAATTAGgcatttttatttattaattcGGTGGGTTTGTATAGTCATATCCAATAATATATCGGAATGTAGCTTAGTATGGTATCTATACGACCACTGCTATAATAAGAAATGGTGCAAAGTTAGATCGGTCAATAGGCCTGCTGTAAAGTTATTTCTACATGCCTTAATGGCCACAATCACTCTTAATTGTTGTCTATGGAATGACCTGTTATCCTGACCTGTAGGGACCAGTGTTaccaacaacaaaacaataataataaaaacatgcACCGGTTTATTGGTATGAAcaagaacaaaaatgtaaatgtaagtaGGCAGACTGCAAGTACTCTGGATAAgcgcatctgctaaatgactcaaatataaATGTAAAACATAAATTATCATAAGTGTTGTGGAAGGATTTGTTGATGGACCTGcatatttattttttgcaaatataacacttttttaCATTGAATAGTGCATTACATCACCCAAACTCATTACACAATTATCTGTCTTCCAGGATATGCACAAATTCCATCAGACACACTAATGTTGTTTTCTACTTTCTGAGCCTAAACTCAACATGCCTTCCTGAAAAATCTCATCGCAAAGAATCACTGATCATATCAGCTGCTAGTCCATTTACCACATGTTGCTTTTTTCTGTGTGCACCCAGTCACATTGCCAACCAATCAATGCGTCCAGATTATAAATAGTTGAACAAAAGCTTTAAATGAACAACCAGGTTTACTGAAACCTGAGGCGCAGTGCATTATTTCTTCATCATTGGTAACTAAATACGGGGGTGTGGAGACTGTGGACTCTGTACAGGCTGCACAGGCACGAGTCTGATTTAGTACGGAGGCCGGTGAGGTAAGGAGGAGGCTGTATATTCCTAACACTAACGGGGCACTGACAAGGACGCAGCCTAGAGCTGACCTCCTCCTCACCTGgccaccccccctcctccccacacAGAGGGATGCCCCCCAGGCCGAGCAGCAGCTGAAGAGGAGGACAAAAAGGTTACTCTGACTGCGCCTCACCAGAAgaggtcctcctctcctctctcagactgGTTGGGACGCTCCAGTTGAGTTTTCTTTGACTCATCCTCACCGGAGTGAGAGAGTGAAGACCTTTTGAAGATCCAGAGGTTCTTACTGTGGGATCACATTTATTTGGAGTAGCTGATAATAGACGCAGACCTACAGTCTTGCTTTGTCTTTCCCTgtctgtggggtgtgtgtgtgagagagtgcttgTGGGTTGGCACCGGTGAGAGCGTCTCCCTTCCCAAAGCCAGGATGTCTGCAGTTCAGCTGCTGCTGGTCCCGCTGGCGCTGTGGGCTCTGCAAGcgTCTCTATGCCATGGAGCCTGTGTGGAGGTGGACTCTGACACTGACGCAGTGGTCAGCGAAGGCTTTAAGCTGGGCTGCATCTCCTGTAAGATGAGGGGCGAGGTGCCCGCCGAGGCCACTGTTGAATGGTCCTTCATGCCCAAAGGGGAGAGCGAGTTCACAAAAATCTACAGCTACGAGGATCTAATGAGCGACATCCCGGACGAGCGCTTCTATGAGCGTCTGGACTGGAACGGCAGCAAGAAGACCAAGGACCTGCAGGACGGCTCCATCTACATCCTGAACGTGACGTGGAACGACACGGGCACCTACCGCTGCATCTTCAACCGCACCCTCACCTTCACCTCCTACGGGTTCCACACTGACGTCACCAAGATCGTCCACCTCAACGTGGTGCCAAGACTGACCAGGGGGATAGCGTCCATCTTGTCTGAGGTGATGATGTATGTCACCATCGTTGGGCTGCAGGTATGGCTGGTGGTGGAGATGATTTACTGCTACAGGAAGATATCAGCGCAAGGCGAGGAAGCATTGAGAGAGAGCGCGGCGGATTACTTAGCTATAGCTTCGGAGAGTAAAGAAAATTGTGCAATGGTGGCAGTGACCGAATAGCACTGgtTAAATAATGGCTCCAGACGATGAATAGCTCTCGATAGCCCTTCAACACTTCACCCCTTCTTCCAGACTTCCATTATGACACCATCTCATTACCCCATCCAGGAGGAGCAGCCAAGAGGCTTGTCCAGAGAACAGATGGATGAGAAGTGAAACAGCCAATGGAAAAAAAGGGACATTACTTTATTTAAATGCAAATATACAGCATGTGTACTATCGAGCAGTACTATAATATCAAAGAGAGTTGTATATACAGTACGTATGCTTAATTATGCAATCCAAATCTTCATTGTAACACTCCTACATTATATTAAGTTAGTTCATACATAGTAGTGATACATCATAaccattggcattaatatgtttCTAAAGGTACATTTCAGGATTCTAAATTGTGATTGTATCAAAGCAATTAGAGATCAGAACTCAACTGCAATCTTACTTGGCTTCAGTAGCCGGTCTTGATCAGACCTTCAATGGCTATTATGCGCAGATCCAGACTAGCCTACCGGTATATTCAAAAGCATCCCAGTAAAACCTTAAGAAAGTTATGCATTCAGGTTAATGAAATGAGTACCCCCTGGGGAGTAGTAGCCTAACACACGGTTGACTAGCTGCAAGTAATGGATTGTACACATCCAGAGCAACTATTTCTGTTTGACAACATCTGTCTACCTGTTAAAAGGTTAAAGCATTAATGTTCTAGTAATGTTACCAATAGGATAACTCTCTCAAGCTCAAAAAGTACATTAGGATCAGGGCAAATTCACTATCCAGTGTCTAGTGTAGGACTCATGcctgtacatactgtagatcGAGAAGGACTGTAGCTAACTATTTATCAACGCAATGGAATCATTTTCACATAACCGGTAGGTCTCTGAGATTTCGCGAGAGAAACGGACGGTTGTGATTCCATGGACATTCATTTGGACATCAGCTTGTGAGGGTTGCTTGTGTCAGACGACTTAAGGTAATGAGTAAATTGCTCAAAGCTATAATTATCCACCAATGTATCCTTCTAGAAAGTGTCACATTATAGCAGTGCCATTTTTAAATGTTGAGACTATCATTCTACCGTTGTGACTGGAAACCTCCATACATTATACATATATTTATTGCAGTATAATTGCATTCTCTCCATATTTCATTAATGCTTAATTTGCTAGAATATCCTGACCATATTTACAACAACCAAGGGCATGTGATATTAGCTACCATTTTACTACCGTGGGAAACTACCACAATTTGTCCAGTGTGTCTGGAGCAGGAATGTCTGTGACTGGTCAAAGACCTGAAATGGTTTAAACAAGACGCTAAACTGGTTTAAAACAAGTTATTTAATGAAGATACCTAATGTGAGCAGAAACTATACTATATACATAGTGTTGGCTTAGTGCTCATATCGATCAGTCCCTATGGAGCAGAGTACAGTGAGCTGCTATTGAAAACTGACATCCCTGTCGTTCCTATTTGGCAGTCAATTCTGAATTATACCTCCAGGGGCAGCATAACACTGCCTAATGTGGACTGCCATGTTGCATACATACTTTCTTATAGAATGTCATTGGGATCTGGGTTTGCTACATTTGAAGTACAGAAAAGTGAAAGAATAATAGGATTGTTATCGCATGATAACTGCAACGCGTGAACAAATGATCATTCATTAGAATTAATGTTCAAGATTTAGAATTATTCAaaattcctaaaaaaaaaaaaaaaagtcacgcCGATTTGGTCAGGTTAGAGTTTCTATTCACCTTTCACAGAACTTCAACATTAAATAGCGGAATATATGTTGGAAAAAACAACAGGCTTAAAACAGGGAATAATCTACTTAAATGTTCACTGAAGAGAGCTTTTCCAGTTCACATTACTATGGAAATGTTGCTTGCCAAAACAGTCAGCTTTATACCATAATACAATTGTCATGTGAGAATGGAGTAGGCTTTATGTCTGGTTTATTAAATCAAAACAATCTC
>XM_021594801.2
TATAGCCTAGATAGCCTTCCGAAGACCTTGTCATTTCGCAGGCTCATCCGTTTTTTCCCTTCGGCGCTCTGGTCACCTATTCAATATCAAATTATGTTGAAAAATAGCCGGTTCGTATGCCTACTGTGGATATTATTTGAAAGTGCCTAGAATGAGAATCTTCGCGTATTTTTGCTGAACTGTGCCACGCTTCCCGCGCAGCGGCAGGTTTCTCTCAAACGCACCGAATTGCCTGGAAGGCAACAGTCGACACAAAACCTTGGAGTAGACGCAATGGAGAATTTAATCTAAAGAGGAACACATGGGGAAAGACACAAAGGAATAAGAGGGACCATACGTAAGGACAGATATTGCTCATAAACGCAGCATATCTTTTTCAAATGTGAAGTGGCCAGATGTGGAGAAAATCACGAATTTAATTCGGTTTTTAATTAGgcatttttatttattaattcGGTGGGTTTGTATAGTCATATCCAATAATATATCGGAATGTAGCTTAGTATGGTATCTATACGACCACTGCTATAATAAGAAATGGTGCAAAGTTAGATCGGTCAATAGGCCTGCTGTAAAGTTATTTCTACATGCCTTAATGGCCACAATCACTCTTAATTGTTGTCTATGGAATGACCTGTTATCCTGACCTGTAGGGACCAGTGTTaccaacaacaaaacaataataataaaaacatgcACCGGTTTATTGGTATGAAcaagaacaaaaatgtaaatgtaagtaGGCAGACTGCAAGTACTCTGGATAAgcgcatctgctaaatgactcaaatataaATGTAAAACATAAATTATCATAAGTGTTGTGGAAGGATTTGTTGATGGACCTGcatatttattttttgcaaatataacacttttttaCATTGAATAGTGCATTACATCACCCAAACTCATTACACAATTATCTGTCTTCCAGGATATGCACAAATTCCATCAGACACACTAATGTTGTTTTCTACTTTCTGAGCCTAAACTCAACATGCCTTCCTGAAAAATCTCATCGCAAAGAATCACTGATCATATCAGCTGCTAGTCCATTTACCACATGTTGCTTTTTTCTGTGTGCACCCAGTCACATTGCCAACCAATCAATGCGTCCAGATTATAAATAGTTGAACAAAAGCTTTAAATGAACAACCAGGTTTACTGAAACCTGAGGCGCAGTGCATTATTTCTTCATCATTGGTAACTAAATACGGGGGTGTGGAGACTGTGGACTCTGTACAGGCTGCACAGGCACGAGTCTGATTTAGTACGGAGGCCGGTGAGGTAAGGAGGAGGCTGTATATTCCTAACACTAACGGGGCACTGACAAGGACGCAGCCTAGAGCTGACCTCCTCCTCACCTGgccaccccccctcctccccacacAGAGGGATGCCCCCCAGGCCGAGCAGCAGCTGAAGAGGAGGACAAAAAGGTTACTCTGACTGCGCCTCACCAGAAgaggtcctcctctcctctctcagactgGTTGGGACGCTCCAGTTGAGTTTTCTTTGACTCATCCTCACCGGAGTGAGAGAGTGAAGACCTTTTGAAGATCCAGAGGTTCTTACTGTGGGATCACATTTATTTGGAGTAGCTGATAATAGACGCAGACCTACAGTCTTGCTTTGTCTTTCCCTgtctgtggggtgtgtgtgtgagagagtgcttgTGGGTTGGCACCGGTGAGAGCGTCTCCCTTCCCAAAGCCAGGATGTCTGCAGTTCAGCTGCTGCTGGTCCCGCTGGCGCTGTGGGCTCTGCAAGcgTCTCTATGCCATGGAGCCTGTGTGGAGGTGGACTCTGACACTGACGCAGTGGTCAGCGAAGGCTTTAAGCTGGGCTGCATCTCCTGTAAGATGAGGGGCGAGGTGCCCGCCGAGGCCACTGTTGAATGGTCCTTCATGCCCAAAGGGGAGAGCGAGTTCACAAAAATCTACAGCTACGAGGATCTAATGAGCGACATCCCGGACGAGCGCTTCTATGAGCGTCTGGACTGGAACGGCAGCAAGAAGACCAAGGACCTGCAGGACGGCTCCATCTACATCCTGAACGTGACGTGGAACGACACGGGCACCTACCGCTGCATCTTCAACCGCACCCTCACCTTCACCTCCTACGGGTTCCACACTGACGTCACCAAGATCGTCCACCTCAACGTGGTGCCAAGACTGACCAGGGGGATAGCGTCCATCTTGTCTGAGGTGATGATGTATGTCACCATCGTTGGGCTGCAGGTATGGCTGGTGGTGGAGATGATTTACTGCTACAGGAAGATATCAGCGCAAGGCGAGGAAGCATTGAGAGAGAGCGCgtTAAATAATGGCTCCAGACGATGAATAGCTCTCGATAGCCCTTCAACACTTCACCCCTTCTTCCAGACTTCCATTATGACACCATCTCATTACCCCATCCAGGAGGAGCAGCCAAGAGGCTTGTCCAGAGAACAGATGGATGAGAAGTGAAACAGCCAATGGAAAAAAAGGGACATTACTTTATTTAAATGCAAATATACAGCATGTGTACTATCGAGCAGTACTATAATATCAAAGAGAGTTGTATATACAGTACGTATGCTTAATTATGCAATCCAAATCTTCATTGTAACACTCCTACATTATATTAAGTTAGTTCATACATAGTAGTGATACATCATAaccattggcattaatatgtttCTAAAGGTACATTTCAGGATTCTAAATTGTGATTGTATCAAAGCAATTAGAGATCAGAACTCAACTGCAATCTTACTTGGCTTCAGTAGCCGGTCTTGATCAGACCTTCAATGGCTATTATGCGCAGATCCAGACTAGCCTACCGGTATATTCAAAAGCATCCCAGTAAAACCTTAAGAAAGTTATGCATTCAGGTTAATGAAATGAGTACCCCCTGGGGAGTAGTAGCCTAACACACGGTTGACTAGCTGCAAGTAATGGATTGTACACATCCAGAGCAACTATTTCTGTTTGACAACATCTGTCTACCTGTTAAAAGGTTAAAGCATTAATGTTCTAGTAATGTTACCAATAGGATAACTCTCTCAAGCTCAAAAAGTACATTAGGATCAGGGCAAATTCACTATCCAGTGTCTAGTGTAGGACTCATGcctgtacatactgtagatcGAGAAGGACTGTAGCTAACTATTTATCAACGCAATGGAATCATTTTCACATAACCGGTAGGTCTCTGAGATTTCGCGAGAGAAACGGACGGTTGTGATTCCATGGACATTCATTTGGACATCAGCTTGTGAGGGTTGCTTGTGTCAGACGACTTAAGGTAATGAGTAAATTGCTCAAAGCTATAATTATCCACCAATGTATCCTTCTAGAAAGTGTCACATTATAGCAGTGCCATTTTTAAATGTTGAGACTATCATTCTACCGTTGTGACTGGAAACCTCCATACATTATACATATATTTATTGCAGTATAATTGCATTCTCTCCATATTTCATTAATGCTTAATTTGCTAGAATATCCTGACCATATTTACAACAACCAAGGGCATGTGATATTAGCTACCATTTTACTACCGTGGGAAACTACCACAATTTGTCCAGTGTGTCTGGAGCAGGAATGTCTGTGACTGGTCAAAGACCTGAAATGGTTTAAACAAGACGCTAAACTGGTTTAAAACAAGTTATTTAATGAAGATACCTAATGTGAGCAGAAACTATACTATATACATAGTGTTGGCTTAGTGCTCATATCGATCAGTCCCTATGGAGCAGAGTACAGTGAGCTGCTATTGAAAACTGACATCCCTGTCGTTCCTATTTGGCAGTCAATTCTGAATTATACCTCCAGGGGCAGCATAACACTGCCTAATGTGGACTGCCATGTTGCATACATACTTTCTTATAGAATGTCATTGGGATCTGGGTTTGCTACATTTGAAGTACAGAAAAGTGAAAGAATAATAGGATTGTTATCGCATGATAACTGCAACGCGTGAACAAATGATCATTCATTAGAATTAATGTTCAAGATTTAGAATTATTCAaaattcctaaaaaaaaaaaaaaaagtcacgcCGATTTGGTCAGGTTAGAGTTTCTATTCACCTTTCACAGAACTTCAACATTAAATAGCGGAATATATGTTGGAAAAAACAACAGGCTTAAAACAGGGAATAATCTACTTAAATGTTCACTGAAGAGAGCTTTTCCAGTTCACATTACTATGGAAATGTTGCTTGCCAAAACAGTCAGCTTTATACCATAATACAATTGTCATGTGAGAATGGAGTAGGCTTTATGTCTGGTTTATTAAATCAAAACAATCTC

Function

NR:

description
sodium channel subunit beta-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021594796.2 False 4375 mRNA 0.42 6 26691738 26715464
XM_021594801.2 True 4303 mRNA 0.42 5 26691738 26715464

Neighbor

gene id symbol gene type direction distance location
LOC110516273 NA coding downstream 41748 26647025 ~ 26649990 (-)
LOC110505173 NA coding downstream 54589 26636727 ~ 26637149 (-)
LOC110516190 fli1 coding downstream 69940 26608152 ~ 26621798 (-)
dhx16 LOC106582345 coding downstream 124108 26548090 ~ 26567630 (-)
LOC110516135 LOC106582343 coding downstream 143897 26541714 ~ 26547841 (-)
LOC110505184 LOC106582443 coding upstream 13610 26729074 ~ 26736469 (-)
LOC110516341 LOC106582531 coding upstream 97002 26812466 ~ 26817929 (-)
LOC110516351 LOC106605237 coding upstream 115712 26831176 ~ 26881042 (-)
LOC110516494 NA coding upstream 217914 26933378 ~ 26939575 (-)
LOC110516475 NA coding upstream 254934 26928593 ~ 26978577 (-)
G240463 NA non-coding downstream 20837 26670628 ~ 26670901 (-)
G240458 NA non-coding downstream 24409 26667059 ~ 26667329 (-)
G240456 LOC106582397 non-coding downstream 27671 26662995 ~ 26664067 (-)
G240438 NA non-coding downstream 32390 26659071 ~ 26659348 (-)
G240450 NA non-coding downstream 53363 26638162 ~ 26638375 (-)
G240497 NA non-coding upstream 47249 26762713 ~ 26763620 (-)
G240519 NA non-coding upstream 69961 26785425 ~ 26828419 (-)
G240574 NA non-coding upstream 141605 26857069 ~ 26857277 (-)
G240579 NA non-coding upstream 146298 26861762 ~ 26861967 (-)
G240588 NA non-coding upstream 158661 26874125 ~ 26874648 (-)
G240464 NA other downstream 16705 26674592 ~ 26675033 (-)
G240409 NA other downstream 122216 26569101 ~ 26569522 (-)
LOC110515750 LOC106582146 other downstream 866981 25822812 ~ 25825108 (-)
LOC110515384 LOC106582009 other downstream 1455371 25171287 ~ 25236536 (-)
LOC110515208 LOC106581894 other downstream 1725530 24936516 ~ 25052970 (-)
LOC110516631 LOC106582601 other upstream 355591 27070914 ~ 27097259 (-)
LOC110516667 LOC106582624 other upstream 396718 27111084 ~ 27127488 (-)
LOC110516678 LOC106605187 other upstream 440104 27154680 ~ 27159987 (-)
G240906 NA other upstream 469196 27184660 ~ 27185105 (-)
G242021 LOC106582922 other upstream 1539693 28205275 ~ 28256509 (-)

Expression


Co-expression Network