LOC110516307 (psmc4)


Basic Information

Item Value
gene id LOC110516307
gene name psmc4
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 26752837 ~ 26763638 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021594804.2
TGTCGCTTGGATCCTTACGTAGAACGTCACATGATAAGGAATTCAACATGGAGGACATTGGAGTAACTGTTGAAAAAATTCAGGACGAAGTGCCTGCCATGCTGAACTCACGACCCCAGACGGGGCTTTCTTTCCTGGCCCCAGAACCAGAAGATCTTGAAGACCTTTACAGCAGATACAAGAAGCTGCAGCAGGAGCTGGAGTTTCTGGAGGTGCAGGAGGAATACATCAAAGATGAACAGAAGAACCTGAAGAAGGAGTTCCTCCACGCCCAGGAGGAGGTGAAGAGGATACAGAGTATCCCCCTCGTCATCGGCCAGTTCCTGGAGGCTGTGGACCAAAACACAGCCATCGTGGGCTCCACCACAGGCTCAAACTACTATGTGCGTATCCTAAGCACCATCGACAGAGAGCTGCTGAAGCCCAATGCGTCGGTGGCCCTGCACAAGCACAGCAATGCCCTGGTGGACGTGCTCCCCCCAGAGGCTGACAGCAGCATCATGATGCTCACATCagACCAAAAGCCGGATGTGATGTATGCTGACATCGGAGGGATGGATATCCAGAAGCAGGAAGTGAGGGAAGCAGTGGAGCTTCCACTCACACACTTTGAACTCTACAAACAGATTGGCATTGACCCGCCCAGGGGGGTTCTGATGTATGGGCCTCCTGGCTGTGGGAAGACCATGCTGGCCAAGGCTGTGGCTCACCACACTACAGcggCGTTCATCCGTGTGGTAGGCTCTGAGTTTGTGCAGAAGTACCTGGGTGAGGGCCCCCGCATGGTGCGTGACGTCTTCCGGCTGGCCAAGGAAAACGCCCCCGCCATCATCTTCATTGATGAGATCGATGCCATCGCTACCAAGCGTTTTGACGCACAGACTGGAGCTGACAGGGAGGTGCAGAGGATTCTGCTGGAGCTTCTCAACCAAATGGACGGCTTTGACCAGACCGTCAACGTCAAGGTGATCATGGCCACCAACAGGGCCGACACCCTGGACCCCGCCCTCCTGCGTCCGGGACGTCTGGACAGAAAGATTGAGTTCCCCCTACCTGACCGCCGACAGAAACGCCTGGTCTTCTCCACCATCACCAGCAAGATGAACCTCTCTGAGGAGGTGGACCTGGAGGACTATGTGGCCAGACCAGACAAGATCTCCGGAGCAGACATCAACTCTATCTGCCAGGAGGCTGGCATGCTGGCTGTCCGTGAAAATAGGTACATTGTCCTGGCCAAGGACTTTGAGAAGGCCTACAAGACAGTTATCAAGAAGGATGAGCAGGAGCATGAGTTCTACAAGTAGAaagtaacccccccccctcccctctctaaaaaaataaataaaaaggcatTCACACAATTTTGTGATTTTATGTGTGTTTGTCTACTACTGtgtccatttgtggtttcagacTGACTAACACACACATAGTGAATGGACTGTGTCTTTATGTTTTACTTGACTGTAGCTTGTATAATGGCTGAGAGTTTGTACCTGTAATGTACTCACTGATTAAACAGTACTCTAAAAAATATTAAAGAAGTTTTCCATAAAAATGTAAGAAAA

Function

symbol description
psmc4 Predicted to enable ATP binding activity; hydrolase activity; and proteasome-activating activity. Predicted to be involved in positive regulation of RNA polymerase II transcription preinitiation complex assembly. Predicted to act upstream of or within protein catabolic process. Predicted to be located in cytoplasm and nucleus. Predicted to be part of cytosolic proteasome complex and proteasome regulatory particle, base subcomplex. Predicted to be active in synapse. Orthologous to human PSMC4 (proteasome 26S subunit, ATPase 4).

NR:

description
26S protease regulatory subunit 6B

GO:

id name namespace
GO:0030163 protein catabolic process biological_process
GO:0006508 proteolysis biological_process
GO:0000502 proteasome complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function
GO:0008233 peptidase activity molecular_function

KEGG:

id description
K03063 PSMC4, RPT3; 26S proteasome regulatory subunit T3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021594804.2 True 1568 mRNA 0.51 10 26752837 26763638
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110503999 LOC106582397 coding upstream 62314 26654888 ~ 26690523 (+)
LOC110503991 NA coding upstream 116199 26634307 ~ 26636638 (+)
LOC110516260 LOC106582385 coding upstream 122751 26628240 ~ 26630086 (+)
LOC110516250 LOC106605227 coding upstream 124755 26622661 ~ 26628082 (+)
zp3d.2 LOC106582366 coding upstream 144751 26605173 ~ 26608086 (+)
LOC110516329 LOC106582539 coding downstream 5510 26769148 ~ 26797346 (+)
LOC110516464 lsr coding downstream 102772 26866410 ~ 26890388 (+)
LOC110516373 LOC106582469 coding downstream 132971 26896609 ~ 26914563 (+)
LOC118936488 LOC106582510 coding downstream 175167 26938805 ~ 26948749 (+)
LOC110516512 LOC106582493 coding downstream 217996 26981634 ~ 26994316 (+)
G240111 LOC106582443 non-coding upstream 22852 26722527 ~ 26729985 (+)
G240105 NA non-coding upstream 37461 26714624 ~ 26715376 (+)
G240104 NA non-coding upstream 38344 26713579 ~ 26714493 (+)
G240102 NA non-coding upstream 40547 26711003 ~ 26712290 (+)
G240098 NA non-coding upstream 49741 26702746 ~ 26703096 (+)
G240181 NA non-coding downstream 74612 26838250 ~ 26839177 (+)
G240206 NA non-coding downstream 112796 26876434 ~ 26876889 (+)
G240208 LOC100194703 non-coding downstream 115176 26878814 ~ 26879059 (+)
G239752 meox2 other upstream 424506 26327408 ~ 26328331 (+)
G239697 LOC106582257 other upstream 532654 26213642 ~ 26220183 (+)
G239026 NA other upstream 1211224 25540769 ~ 25541613 (+)
G238540 LOC106582009 other upstream 1553603 25195287 ~ 25199234 (+)
G238050 NA other upstream 1976892 24775279 ~ 24775945 (+)
G240244 NA other downstream 287548 27051186 ~ 27051954 (+)
LOC110516767 LOC106605158 other downstream 492950 27240708 ~ 27264405 (+)
G241150 LOC106582751 other downstream 792534 27556172 ~ 27558532 (+)
LOC110516984 NA other downstream 951405 27705985 ~ 27723794 (+)
LOC110516993 LOC106605183 other downstream 983709 27725189 ~ 27749972 (+)

Expression

LOC110516307(psmc4) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 80.
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LOC110516307(psmc4) Expression in each Bioproject

Bar chart with 21 bars.
LOC110516307(psmc4) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 2000.
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Co-expression Network