LOC110516341 (LOC106582531)


Basic Information

Item Value
gene id LOC110516341
gene name LOC106582531
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 26812466 ~ 26817929 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021594818.2
cacagctgtgttATTTTATGTTTACACCtgacacagcaggacagcagccATACCTGAAGTAAACTGACAAGAGATGGCGTATTCCACCAGCACTCTTGCTGCTGGCTGCTTTGGGAAGATCTACAGGGAGAAGTACAATGACACCTGGGCTGCAATCAAGAAGGTGCCACAACACTTAATCAATAGGAGAGACCTGGAGAGAGAGTGTCAAGTATACAATAAGGCAATTCATCCTAACATAGTGAAGCTTCTGGGTAATCCAACACTCAAGGACTCTAAGTGGATCATCCCCATGGAGTTCATCTTTGGAGAAGAACTGGAGACAACCATCTTCAAATCACAAAAATCTCAAATCCAGTTGACTCCATCTATAAAGGCCACCATCATCACAGGCATGTGTGAAGGACTACTTTATCTACACAGCAAAGATATTGTCCATCAGGACCTCAAGCCTGACAACATCATGGTAGAGCATGACACGCACAGAGCTGTGATCATTGATATGGGACTGGCCAAATTCTTCTGCAATGGCCTAAATTCTGCTATGGATACGGGCAACGAGGCCTACTCTCCCCCTGAGGTCCTGCAGAGGCGGGGCCAGCGAGATCAGCGCTCGGACGTGTGGGCTATGGGTAAAATCATTGCCGAACTCTGTGCCAGAGTCAGGCTGCACACCCCCAGCGTCTGTCCAACTAAGATCCAGGAGACCCTCAGTCTCCAAGGCCAGCAGTACTGTAACGCTGTCTGTAGGATGGTGCAGAGAGACCCCACAATGCGAGCCACCATGGCTGGAATCATGCCGGAGATACAAAGGGCAGGGGTAAATGGCGGTGGCGGCAACACTGGGAGGCAGAAAAGAGGACATCTTCTGACACCCTTTCCTCACACTCAGGTAAAAAATGCATTGCCACGTCCTCAAGCTCCTGTACAGCGTTCACCATCTCCATCGAGATTTGAGCGCAGTGCTTTACCAATGCCTGAGGTCAAGACAGTAGTGCCAGCTCCTGTGCAAGCGCCTTCTCCATCGAGATGGGAGCATACAGCCTTGCCAAAGACTGAGTTGAAGTTTGAGGTCAAGACAACACTGAGACCACAACCCGCACAGCAGTCACTTTCCCTATCAAGATGGGAGCGGGCAGCCTTGCCAAAGACTGAGGTCAAGAACTCACCATCTCCCCTTTCAAAGGTAGACAAGGGTAATGCTCTGTTTCCATCAGGCACAACTCAACCCAGTCAAGATGTCATGAAACAGCTTCTCTACAAAGAGGCGTCGAGGGGTCTCCCATGCCCACTCCCCACGACAGGCAAGGTGCGAATCCGCCGTTATGAGCAAAGGAATGGGGAAGTGGAGACTTGGGAGCAAAAGGAGGTAGAGACTGAAGGAGGGAGGATAGTCAAGTTTGAGGATGTGATGTTTAACAACAAGTCATAAGAAGGTTATTGAAAGATTGTGAAGTAGTTGGGAGTTGATTTGACTGTGCTTCTTCAGAGTGCGGGCCACTCCCCTTCCGTCCTTCAATGTAAAAGTCTGACATGTTTCTGAAAAAGGTGAAAGACTGTATTTGGGACAGGGGATAAACTAATGGAATAATTCTAATGTCCAGTGAAACTATACTATGTAACAATACATTTACACATTTTCTTACTACGGTAGGCtaaatgtgtatatactgtatgaatataaatatatatctcAACAACAATAAAAGTTGTATTGCACTGTTAAGAAGGAAACCTAA

Function

NR:

description
serine/threonine-protein kinase Nek8-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021594818.2 True 1739 mRNA 0.47 5 26812466 26817929

Neighbor

gene id symbol gene type direction distance location
LOC110505184 LOC106582443 coding downstream 75997 26729074 ~ 26736469 (-)
LOC110516285 LOC106582421 coding downstream 97002 26691738 ~ 26715464 (-)
LOC110516273 NA coding downstream 162476 26647025 ~ 26649990 (-)
LOC110505173 NA coding downstream 175317 26636727 ~ 26637149 (-)
LOC110516190 fli1 coding downstream 190668 26608152 ~ 26621798 (-)
LOC110516351 LOC106605237 coding upstream 13247 26831176 ~ 26881042 (-)
LOC110516494 NA coding upstream 115449 26933378 ~ 26939575 (-)
LOC110516475 NA coding upstream 152469 26928593 ~ 26978577 (-)
LOC110516606 LOC106605168 coding upstream 232063 27049992 ~ 27064472 (-)
LOC110516631 LOC106582601 coding upstream 252985 27070914 ~ 27097259 (-)
G240497 NA non-coding downstream 48846 26762713 ~ 26763620 (-)
G240472 NA non-coding downstream 112861 26699281 ~ 26699605 (-)
G240463 NA non-coding downstream 141565 26670628 ~ 26670901 (-)
G240458 NA non-coding downstream 145137 26667059 ~ 26667329 (-)
G240456 LOC106582397 non-coding downstream 148399 26662995 ~ 26664067 (-)
G240574 NA non-coding upstream 39140 26857069 ~ 26857277 (-)
G240579 NA non-coding upstream 43833 26861762 ~ 26861967 (-)
G240588 NA non-coding upstream 56196 26874125 ~ 26874648 (-)
G240590 NA non-coding upstream 59307 26877236 ~ 26878016 (-)
G240601 NA non-coding upstream 71947 26889876 ~ 26891172 (-)
G240464 NA other downstream 137433 26674592 ~ 26675033 (-)
G240409 NA other downstream 242944 26569101 ~ 26569522 (-)
LOC110515750 LOC106582146 other downstream 987709 25822812 ~ 25825108 (-)
LOC110515384 LOC106582009 other downstream 1576099 25171287 ~ 25236536 (-)
LOC110515208 LOC106581894 other downstream 1846258 24936516 ~ 25052970 (-)
LOC110516667 LOC106582624 other upstream 294253 27111084 ~ 27127488 (-)
LOC110516678 LOC106605187 other upstream 337639 27154680 ~ 27159987 (-)
G240906 NA other upstream 366731 27184660 ~ 27185105 (-)
G242021 LOC106582922 other upstream 1437228 28205275 ~ 28256509 (-)

Expression


Co-expression Network