LOC118936488 (LOC106582510)


Basic Information

Item Value
gene id LOC118936488
gene name LOC106582510
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 26938805 ~ 26948749 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036973680.1
CTCGCTTTCTCCTTCTTGTTGGTCTTCGAGGAAAAAGCTGCAAGACCTTTCAGGACCTCTCAGGGACTGCCAAACAACACcgcacacctctgcatctttttCAAATACAGGCACCagaagacacagacagagacagtgacaagaagagaaagaggaaagagaccCCGGTACTGTGATTGATTCATCAAGGCAGTGTAAGCAGGATGTGGGTCCTCATCTCGGCagctctacttctctctctgacagagaGAGCCACATGCGATACATCACCCTGGACCATCACCTTCAGTCCAGCAGAAATAACAGCAGAGAAGGGACTATGTGCTGTTATTTCATGTACTTTCACTCACCCTGATAACATAAAGCCTACCGCTGCAATGTGGTTCAAGTGCCCTACAAAGGGCAAATGTGATAAGGATAAAAACACAATGTTCCACTCCAATACTCCCTCTAAAGCTCAGGAGGGTATTAAACAGAGAGTGTCTCTACTGGAGACTGATCTGACAAAGAAGAACTGTAGTGTGATCATCAACGACATCAGAGAGACTGATGCTGGAGAGTATCAATTCAGACTTCCAAGTTCATATACATACTCGAAGAAAGTGAGCATCACAGTGAGCGCTCTGACCCAGAAGCCCTCAGTGTTGACTCCTCCTCTGACAGAGGGAGAACCAGCTACTCTGACCTGCATCGCCCCGGGGATGTGCTCTGGAACTCCTCCTAACATCACATggacagggagaggaacaggagacaaCATCATTGAGCTCAGAGACAACATCAccatacaggagagagaggaccTGACCACTGTGACGACAACCCACTTCTCAACGTTGACCTTTACCCCCTCAGCTGAACACCACAACATGATGGTTACGTGTCAAGTAACCTTCCAGAAAAAATATCAAATTGAAGAGACAGTAACTTTGAATATGACATATGTGAAAGACCCCCAAATAACTGGAAATGAAATGGTGAAGGAGGATGGTACCCTGGATCTGACATGCAGAGTTGACAGTTACCCTCCATCTGATATCACTTGGAGTAAGAACGGGGCAAGTGCCCCACTTCAGAATTACACTGAAAATGCCACTCTCACCATCTGCAATGTGACAAGAGAACATGCTGGGGAGTATGTGTGTACAGTTCAACACCTCAACAGGACTATGACAGCTTCCACTGTTGTCACTGTGATGTACCTTCCTGTGATTCTTCCTGGCTCTGGGTGTGTGGACCAGGCAGAGGTCATgacctgtctgtgtgtcagtcaggGGGTTCCCTCACCCCTCATAGTGTGGCCACTGCTGGAGCTCAACACAGAGAGGTGCAGCCCCACTACATCAGTGTTGGGTTCCTCAGTGAACAGCACCATCAGTCTGCCTGTTGGAAACCACAACAACACCACTGTGGAGTGTGTCAGCAGCAATGTGGTGGGTGTAGTGAGAGAGAAGCTGCAGGTCACACAAAATAAGAGCCAAGAAAAGCAAAGAGGATGTGGGACTGCAGTTCTCCCCTGGACCATAGCTGGTATGTCTCTCAGTGTGACTGTAGCCCTTCTCATCTACCTGTCTACAAATGCTTACATACGGATGCAAGGTAAGAATGTGAAACCAAAAGAAGAGGAGAGTGCCTACATCTCATTGGATAAAAAATACACGTCTCAGGAAGAGTATGAGGTCATTGCCAGGCGTCCAAGATGattgagcaccccccccccccccccactcctaaGCTTATGCTGAGAGTTTTCAGTAGACTGAGATCATTTTCATGTAAAATAATTCACACTTATCATCTTAGTAAAGTTTCTGATTTGTATGCATAAAATGAACAAGTTATTAAGCACaattttttataataaaaatgATTATGTATTTCATGGAAAAGCACAAGTATTatacgttttttttaaatcacatactttttaaaatgtttacttTAGAGAGACTATGTGAATCAAACATGGAGATATAATGATTCTTTGCACTCTGCACTATCATCCTGAAATTGTACATTTGCTCATTGCACTTTGTGCACTGCTGTAGATTCCTTCACCTGCCAATTCTCTgacttcaatatatatatatatttccattcCATATTgtggtaaaaaaaatatgtgtGATGTAGTTACTGTAAACAATGAAGAGGTGGCATGAGATTAACTGTTAGTTAAGTAATGGAGAAACTGTATGAAATAATATATACTGTCGTGGCCAAAATATTGGCATCCTTGCACTTTTTTCAAGTAATTCACAATTTTCCCTAAAAATAAGTTGAAATTGAATAAAGTATTTGGTCTCCACAGTTCTTTATTTCAC
>XM_036973679.1
TCTGCTTAATGACTTAAATGTCAACCAAGTTGGTTTGATGGGTTGGTTGATTAtggtctatatacagtatggctgggcgGTATACAGTATAGAGGGACTTCCTGGATTGCAGCACCAAGTTAGAGAGAGTAACAGAATGGGGACATGAAGTGACAGTTCACACCCATCAGAGAGACACAGGGCTCCTGATCAACAGGAGGAGAGAGCACACAGAGAGACCagaagacacagacagagacagtgacaagaagagaaagaggaaagagaccCCGGTACTGTGATTGATTCATCAAGGCAGTGTAAGCAGGATGTGGGTCCTCATCTCGGCagctctacttctctctctgacagagaGAGCCACATGCGATACATCACCCTGGACCATCACCTTCAGTCCAGCAGAAATAACAGCAGAGAAGGGACTATGTGCTGTTATTTCATGTACTTTCACTCACCCTGATAACATAAAGCCTACCGCTGCAATGTGGTTCAAGTGCCCTACAAAGGGCAAATGTGATAAGGATAAAAACACAATGTTCCACTCCAATACTCCCTCTAAAGCTCAGGAGGGTATTAAACAGAGAGTGTCTCTACTGGAGACTGATCTGACAAAGAAGAACTGTAGTGTGATCATCAACGACATCAGAGAGACTGATGCTGGAGAGTATCAATTCAGACTTCCAAGTTCATATACATACTCGAAGAAAGTGAGCATCACAGTGAGCGCTCTGACCCAGAAGCCCTCAGTGTTGACTCCTCCTCTGACAGAGGGAGAACCAGCTACTCTGACCTGCATCGCCCCGGGGATGTGCTCTGGAACTCCTCCTAACATCACATggacagggagaggaacaggagacaaCATCATTGAGCTCAGAGACAACATCAccatacaggagagagaggaccTGACCACTGTGACGACAACCCACTTCTCAACGTTGACCTTTACCCCCTCAGCTGAACACCACAACATGATGGTTACGTGTCAAGTAACCTTCCAGAAAAAATATCAAATTGAAGAGACAGTAACTTTGAATATGACATATGTGAAAGACCCCCAAATAACTGGAAATGAAATGGTGAAGGAGGATGGTACCCTGGATCTGACATGCAGAGTTGACAGTTACCCTCCATCTGATATCACTTGGAGTAAGAACGGGGCAAGTGCCCCACTTCAGAATTACACTGAAAATGCCACTCTCACCATCTGCAATGTGACAAGAGAACATGCTGGGGAGTATGTGTGTACAGTTCAACACCTCAACAGGACTATGACAGCTTCCACTGTTGTCACTGTGATGTACCTTCCTGTGATTCTTCCTGGCTCTGGGTGTGTGGACCAGGCAGAGGTCATgacctgtctgtgtgtcagtcaggGGGTTCCCTCACCCCTCATAGTGTGGCCACTGCTGGAGCTCAACACAGAGAGGTGCAGCCCCACTACATCAGTGTTGGGTTCCTCAGTGAACAGCACCATCAGTCTGCCTGTTGGAAACCACAACAACACCACTGTGGAGTGTGTCAGCAGCAATGTGGTGGGTGTAGTGAGAGAGAAGCTGCAGGTCACACAAAATAAGAGCCAAGAAAAGCAAAGAGGATGTGGGACTGCAGTTCTCCCCTGGACCATAGCTGGTATGTCTCTCAGTGTGACTGTAGCCCTTCTCATCTACCTGTCTACAAATGCTTACATACGGATGCAAGGTAAGAATGTGAAACCAAAAGAAGAGGAGAGTGCCTACATCTCATTGGATAAAAAATACACGTCTCAGGAAGAGTATGAGGTCATTGCCAGGCGTCCAAGATGattgagcaccccccccccccccccactcctaaGCTTATGCTGAGAGTTTTCAGTAGACTGAGATCATTTTCATGTAAAATAATTCACACTTATCATCTTAGTAAAGTTTCTGATTTGTATGCATAAAATGAACAAGTTATTAAGCACaattttttataataaaaatgATTATGTATTTCATGGAAAAGCACAAGTATTatacgttttttttaaatcacatactttttaaaatgtttacttTAGAGAGACTATGTGAATCAAACATGGAGATATAATGATTCTTTGCACTCTGCACTATCATCCTGAAATTGTACATTTGCTCATTGCACTTTGTGCACTGCTGTAGATTCCTTCACCTGCCAATTCTCTgacttcaatatatatatatatttccattcCATATTgtggtaaaaaaaatatgtgtGATGTAGTTACTGTAAACAATGAAGAGGTGGCATGAGATTAACTGTTAGTTAAGTAATGGAGAAACTGTATGAAATAATATATACTGTCGTGGCCAAAATATTGGCATCCTTGCACTTTTTTCAAGTAATTCACAATTTTCCCTAAAAATAAGTTGAAATTGAATAAAGTATTTGGTCTCCACAGTTCTTTATTTCAC
>XM_036973681.1
TCTGCTTAATGACTTAAATGTCAACCAAGTTGGTTTGATGGGTTGGTTGATTAtggtctatatacagtatggctgggcgGTATACAGTATAGAGGGACTTCCTGGATTGCAGCACCAAGTTAGAGAGAGTAACAGAATGGGGACATGAAGTGACAGTTCACACCCATCAGAGAGACACAGGGCTCCTGATCAACAGGAGGAGAGAGCACACAGAGAGACCagaagacacagacagagacagtgacaagaagagaaagaggaaagagaccCCGGTACTGTGATTGATTCATCAAGGCAGTGTAAGCAGGATGTGGGTCCTCATCTCGGCagctctacttctctctctgacagagaGAGCCACATGCGATACTCTGACCCAGAAGCCCTCAGTGTTGACTCCTCCTCTGACAGAGGGAGAACCAGCTACTCTGACCTGCATCGCCCCGGGGATGTGCTCTGGAACTCCTCCTAACATCACATggacagggagaggaacaggagacaaCATCATTGAGCTCAGAGACAACATCAccatacaggagagagaggaccTGACCACTGTGACGACAACCCACTTCTCAACGTTGACCTTTACCCCCTCAGCTGAACACCACAACATGATGGTTACGTGTCAAGTAACCTTCCAGAAAAAATATCAAATTGAAGAGACAGTAACTTTGAATATGACATATGTGAAAGACCCCCAAATAACTGGAAATGAAATGGTGAAGGAGGATGGTACCCTGGATCTGACATGCAGAGTTGACAGTTACCCTCCATCTGATATCACTTGGAGTAAGAACGGGGCAAGTGCCCCACTTCAGAATTACACTGAAAATGCCACTCTCACCATCTGCAATGTGACAAGAGAACATGCTGGGGAGTATGTGTGTACAGTTCAACACCTCAACAGGACTATGACAGCTTCCACTGTTGTCACTGTGATGTACCTTCCTGTGATTCTTCCTGGCTCTGGGTGTGTGGACCAGGCAGAGGTCATgacctgtctgtgtgtcagtcaggGGGTTCCCTCACCCCTCATAGTGTGGCCACTGCTGGAGCTCAACACAGAGAGGTGCAGCCCCACTACATCAGTGTTGGGTTCCTCAGTGAACAGCACCATCAGTCTGCCTGTTGGAAACCACAACAACACCACTGTGGAGTGTGTCAGCAGCAATGTGGTGGGTGTAGTGAGAGAGAAGCTGCAGGTCACACAAAATAAGAGCCAAGAAAAGCAAAGAGGATGTGGGACTGCAGTTCTCCCCTGGACCATAGCTGGTATGTCTCTCAGTGTGACTGTAGCCCTTCTCATCTACCTGTCTACAAATGCTTACATACGGATGCAAGGTAAGAATGTGAAACCAAAAGAAGAGGAGAGTGCCTACATCTCATTGGATAAAAAATACACGTCTCAGGAAGAGTATGAGGTCATTGCCAGGCGTCCAAGATGattgagcaccccccccccccccccactcctaaGCTTATGCTGAGAGTTTTCAGTAGACTGAGATCATTTTCATGTAAAATAATTCACACTTATCATCTTAGTAAAGTTTCTGATTTGTATGCATAAAATGAACAAGTTATTAAGCACaattttttataataaaaatgATTATGTATTTCATGGAAAAGCACAAGTATTatacgttttttttaaatcacatactttttaaaatgtttacttTAGAGAGACTATGTGAATCAAACATGGAGATATAATGATTCTTTGCACTCTGCACTATCATCCTGAAATTGTACATTTGCTCATTGCACTTTGTGCACTGCTGTAGATTCCTTCACCTGCCAATTCTCTgacttcaatatatatatatatttccattcCATATTgtggtaaaaaaaatatgtgtGATGTAGTTACTGTAAACAATGAAGAGGTGGCATGAGATTAACTGTTAGTTAAGTAATGGAGAAACTGTATGAAATAATATATACTGTCGTGGCCAAAATATTGGCATCCTTGCACTTTTTTCAAGTAATTCACAATTTTCCCTAAAAATAAGTTGAAATTGAATAAAGTATTTGGTCTCCACAGTTCTTTATTTCAC

Function

NR:

description
sialic acid-binding Ig-like lectin 5 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036973680.1 False 2324 mRNA 0.43 8 26938805 26948749
XM_036973679.1 False 2429 mRNA 0.43 8 26942467 26948749
XM_036973681.1 True 2072 mRNA 0.43 7 26942467 26948749

Neighbor

gene id symbol gene type direction distance location
LOC110516373 LOC106582469 coding upstream 24242 26896609 ~ 26914563 (+)
LOC110516464 lsr coding upstream 48417 26866410 ~ 26890388 (+)
LOC110516329 LOC106582539 coding upstream 141459 26769148 ~ 26797346 (+)
LOC110516307 psmc4 coding upstream 175167 26752837 ~ 26763638 (+)
LOC110503999 LOC106582397 coding upstream 248282 26654888 ~ 26690523 (+)
LOC110516512 LOC106582493 coding downstream 32885 26981634 ~ 26994316 (+)
LOC110516537 LOC106582465 coding downstream 56096 27004845 ~ 27011081 (+)
irgq2 LOC106582554 coding downstream 64228 27012977 ~ 27014227 (+)
si:dkey-24p1.1 LOC106582456 coding downstream 67709 27016458 ~ 27048676 (+)
LOC110505196 NA coding downstream 235034 27183783 ~ 27185128 (+)
G240208 LOC100194703 non-coding upstream 59746 26878814 ~ 26879059 (+)
G240206 NA non-coding upstream 61916 26876434 ~ 26876889 (+)
G240181 NA non-coding upstream 99628 26838250 ~ 26839177 (+)
G240242 NA non-coding downstream 101355 27050104 ~ 27050575 (+)
G240272 NA non-coding downstream 128116 27076865 ~ 27077077 (+)
G240304 NA non-coding downstream 181270 27130019 ~ 27132621 (+)
G240316 NA non-coding downstream 193721 27142470 ~ 27143522 (+)
G240324 NA non-coding downstream 205937 27154686 ~ 27155500 (+)
G239752 meox2 other upstream 610474 26327408 ~ 26328331 (+)
G239697 LOC106582257 other upstream 718622 26213642 ~ 26220183 (+)
G239026 NA other upstream 1397192 25540769 ~ 25541613 (+)
G238540 LOC106582009 other upstream 1739571 25195287 ~ 25199234 (+)
G238050 NA other upstream 2162860 24775279 ~ 24775945 (+)
G240244 NA other downstream 102437 27051186 ~ 27051954 (+)
LOC110516767 LOC106605158 other downstream 307839 27240708 ~ 27264405 (+)
G241150 LOC106582751 other downstream 607423 27556172 ~ 27558532 (+)
LOC110516984 NA other downstream 766294 27705985 ~ 27723794 (+)
LOC110516993 LOC106605183 other downstream 798598 27725189 ~ 27749972 (+)

Expression


Co-expression Network