LOC110516644 (LOC106582613)


Basic Information

Item Value
gene id LOC110516644
gene name LOC106582613
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 27098540 ~ 27103054 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036973701.1
gTTGAAAGTGTTGACATCTTGCACATGTCCACTGCTCTTGTTTAGTGCTTGGAGGTTCGCGAGGAGTAAGCTCCCCTTATCAGATTTTTTGGACTTCCTGGCTACATGCACAATAAGTCAGTATAGCTACAACATTTGTGCCTACCATGCTAATTTTGTTTTAGGCTATAGCCAAATATACTGCAAAGGCAACGGACCTCTACAAAGGATTGGGACACAAACTCGTTGGCTCAGTTCTGGGATTTCTACCCTGCCCGTCGCAGTGTCAGTTAAATCTCCTTGGAGAAAAAATGTGTTCAATTGTAAACCGACTGAAACCTGCTCTGGCCTACACGCTGCGCCTCCAAACAACCGGGCACTTGCGTAAAGTTCCAGCCCACATGGGCCCGGGCTTACGCACCAGCaagcagcctctggaatcagtcaTCATACGACCTTACTGCGCCAGGATGGAGTTGGGAAAAGGGCCTTTCTTCAGGCAGCTTTTTGAGTCGGTGAGCAGCACCTACACCTATCTGCTGGCTGATACAGAGAGCAGGGAGGCAGTCCTCATTGATCCCGTACTGGAGACAGTGGACAGGGATCTGAAACTCATAGAGGAACTGGGTTTCAACCTGAAAGTTGCAGTGAACACTCACTGCCATGCAGACCACATCACAGGCACGGGACAGCTGAAGAACAGGCTGTTTGGGATGAAGAGTGCCATCTCCAAGCACAGCGGGGCCAGTGCAGACATCCTGCTATCAGAGGGAGATAAGATCAGCTTTGGCAAACATTGTCTGACGGTGAGGGAGACTCCAGGACACACAGACGGCTGTGTGACGTTGGTGACAGGGGACCAGAGCATGGCTTTCACTGGGGACACACTGCTAATCAGGGGCTGTGGAAGGACAGACTTCCAGCAGGGCTGCTCTAGGAGGCTCTATGAATCAGTCCACCAGAAGATCTTTACATTACCTCCTCAGTGTCTCGTCTTCCCTGCACATGACTACAAAGGTCAGACGGCCTCCACAGTGGGCGAGGAGAGGAGGTTTAACCCCCGCCTGACCAAGAGCGTGGAGGAGTTTGTGGATATCATGACCAACCTGAACCTCCCCAAGCCTGCTAAGATAGATATTGCGGTGCCTGCAAACCTGGTGTGTGGACTCCATGAGGTTTGAATGTCAAATCGATTTTTAGGATTTCACTTTAAGCACTATTGGGAGGAAGAGGGAAATTCTTTTCACCCGCCCACAACTTCATGTTTTAAATGCAATATTTTGTATCTAAGAAGTAACCAAAACTAAAGTTTGTCAAAAAATCTAAGAATGTATATATTTCATTTCCAATATGAACATAAATTCCTCCTTGTTTGCCTATGAAAAAAAGCAGTGTTCATGATTTGGTGGGTGTACAGATACTGAAATTGTATAGTAGAAGATGCATTCAAATACATGATCATAAAACATACCCATGTACATTGTGACATTTCTAATACAATCTCCTGGAGAAATGTGAACAGTAAAATGACCTAGTTTTATATTAAATCAAAATTGTTCAAATGTAAA

Function

NR:

description
persulfide dioxygenase ETHE1, mitochondrial-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K17725 ETHE1; sulfur dioxygenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036973701.1 True 1547 mRNA 0.46 7 27098540 27103054

Neighbor

gene id symbol gene type direction distance location
LOC110516631 LOC106582601 coding downstream 1281 27070914 ~ 27097259 (-)
LOC110516606 LOC106605168 coding downstream 34068 27049992 ~ 27064472 (-)
LOC110516475 NA coding downstream 119970 26928593 ~ 26978577 (-)
LOC110516494 NA coding downstream 158965 26933378 ~ 26939575 (-)
LOC110516351 LOC106605237 coding downstream 217498 26831176 ~ 26881042 (-)
LOC110516667 LOC106582624 coding upstream 8030 27111084 ~ 27127488 (-)
LOC110516655 LOC106582635 coding upstream 25045 27128099 ~ 27151658 (-)
LOC110516678 LOC106605187 coding upstream 51626 27154680 ~ 27159987 (-)
lim2.5 LOC106605161 coding upstream 103061 27206115 ~ 27211770 (-)
LOC110516735 LOC106582654 coding upstream 109135 27212189 ~ 27228503 (-)
G240559 NA non-coding downstream 97025 27001069 ~ 27001515 (-)
G240632 NA non-coding downstream 101135 26997060 ~ 26997405 (-)
G240557 LOC106582493 non-coding downstream 104270 26992467 ~ 26994270 (-)
G240665 LOC106584575 non-coding upstream 2960 27106014 ~ 27106764 (-)
G240688 NA non-coding upstream 57764 27160818 ~ 27161025 (-)
G240690 LOC106605163 non-coding upstream 59467 27162521 ~ 27162854 (-)
G240691 NA non-coding upstream 60133 27163187 ~ 27163396 (-)
G240464 NA other downstream 423507 26674592 ~ 26675033 (-)
G240409 NA other downstream 529018 26569101 ~ 26569522 (-)
LOC110515750 LOC106582146 other downstream 1273783 25822812 ~ 25825108 (-)
LOC110515384 LOC106582009 other downstream 1862173 25171287 ~ 25236536 (-)
G240906 NA other upstream 81606 27184660 ~ 27185105 (-)
G242021 LOC106582922 other upstream 1152103 28205275 ~ 28256509 (-)
LOC110517114 pnrc2 other upstream 1172718 28275767 ~ 28280077 (-)

Expression


Co-expression Network