LOC110516667 (LOC106582624)


Basic Information

Item Value
gene id LOC110516667
gene name LOC106582624
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 27111084 ~ 27127488 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036973704.1
TAGACTATTTCTTAGTCAAATATCGACATTTTATAGCTATATGGCTACATTCTGATGTACATTGAGTATCATACCAGTcaagtggggcggcagggtagcctagtggttagagcgttggactagtaaccggaaggttgcaagttcaaacccccaagctgacaaggtacaaatctgtcgttctgcccctgaacaggcagttaacccactgttcctaggctgtcattgaaaataagaatttgttcttaactgtcttgcctagttaaataaaggttaaaaaaaataagattTAAAAAAAGTATTCCTGTTAGTGAGTTGTGCGTTACACAATCTTTTTTTATCAAGCTCTACTGTACTTCCTCAAGTTGTCAATGTGTAGGCTGTACCATTGTCTGGACCATTGTCTGTACCTTATTCACAGTCTCTAAGCATAGGAATGGTGTAAGCATTGGCTGGAAGGAGTTTACCCCATTGTGAAGTCCATGCGAGAAAGTGTGTGCATTGGCTATGTCCCGATTCTCCACTTTTTTCCAGAAGTGTACACTTGCACACTCCCTGTCACAGATTATAACGCATAGGAATGGTGTAAGCATTGGCTGGAAGGAGTTTACCCCATTGTGAAGTCCATGCGAGAAAGTGTGTGCACACTTTGGAAGAACGGTAAATAATTGGGTCTCAGCTATACTGTGTAGATCACATTATGCTCCCAGTGAGGGGCACCGGTGAGAGCTTTGTGCATGGAACAAATCAGCAGTCATGATCATTTTAAGTGAGTCATTTACTGAGATACTGTAAATGGATGAAGGGGTTTTGATTTGTACCTAATTTGTTCAAAGTTCAAGTAGCAGAGAAGCATGATAGACACAGAGAGGCTTAAAGGTCTGCTTCATTGGAGATAGTGTGCTGTCTTATCTTAACTTCTAAggcaggggtaggcaactagattcagccgcagaCCCACTTTTGTCAGAGATGACGGACTGGGGCCTGCAAAATAATTcatacactgcaaattgaccaagTAAGCCCAAAATATATCTTTTAAAATAAAGACAcaatcacatactgtatgtctatctttttatttgtgggaatacttgggaacagatttccattATTTTTAGAGGAATTCCTGCAGATTATAGTccttttttttacaaaaaactgAGAGGCCAAAATAAATGACGACTCGTCTGTTTGTACGATGAAAAACAACCTGAGTGAATAGCTGGCTTCATTCAGTACTTCACTGAACTATCTGTTATAATTAGGAGATATAATTCTTACTCTCACTGTGTTTTGAAGTGAGTTAAATGACATTGCCTATCGCATACTGCCTGCCCTCACCCATTGCTATCCCCGTGTATGCTTTAATGAAGCATATACATTTTCCCTTCGAATTGTCTTCCCCGTCTCATTTCTCTGATCTGGTTCTACTCATTGCGAGCGCTGCCAAACGTATATGGATGATTTTAATTTGTCGCACAATTAGAGAGCTTTTTACCCACTCGGTTCATTTGTTTTCATCTGTTTTTTTTCTGAATAGGTTTCAAGACAAGTGAGCGTCTCGTCTCCTAAAGAGagtgcacgcacgcgcacacacacacacacactgctcactgGATCTGATCCTAGGAACCACCaacgagagaggagggggggaaagagagagggagagtaccGCTAAATCACTTGGAGGAACGGACAGAGTGTGAAAACCAGAGCGAGGTGGAGAGAAGGGATTTACTGCTGAAGCACTCATTGAGGTGTAGAGGGAGTGAGTGTGTTGCATGTTATAGAGGTTGAGGTGTGAGCTCTGACAGGAGAAGGGTTAGCAGGCTCAGAGCACACTGAGTGGTGACTGACTGATTCACTCTACTGTCATTTTCCATTTTCTGCTTATTCAGAGtgagtagtgagtgcatacattgtcATACTGTCTGCTGTCTATTGCAGTTCTCTGTTCGGAGGGTATGGGACTGACTACCACTACAGCCGAGTGAGGactgttccagactctctctgTCCAGAGGAGCATGATGACTACTTTCCCCAATGAGACAggcttctcctccctctctccatcatactccctctcctctcccacaccGTCCCTCACCTCCAAccctttctcttccttctccctctctacctcctcctcctctccgtccAACTGCTCCAGCTCTCCGttgctctcctcccctccctataACTTCTACGctgtgctgctggtgctgctcATCTTTTGTGTGGTGTTTGGCAACGTGCTAGTTTGTGTGGCGGTGTCGCGCGAGCGTGCCCTCCAGACTACCACCAACTACCTCATTGTCTCCCTGGCCGTGTCTGACCTGCTGCTGGCCATCCTGGTCATGCCCTGGGGCGTCTacctggagGTGGTAGGGGAGTGGCGCTTCAGTCTCATCCACTGTGACATCCTCCTGACCCTGGACGTCATGATGTGTACTGCCAGCATCCTCAACCTCTGTGCCATCAGCATTGACAGgtacaTGGCGGTGGCGATGCCCATGCTGTATAACACCAGATACAGCTCCAGGAGGAGGGTGGCTCTGATGATTGCTGTTGTGTGGTTCCTCTCCTTCGCCATCTCCAGCCCTCTGCTATTTGGACTCAACAACACAgCCAGTCGGGAGGAGACCAAGTGTGCCTTCGCTGACCCGTCTTTCGTGGTCTACTCATCCGTGGCCTCCTTCTACGTTCCGTTCATCGTGACCCTGCTGGTGTACGCCCAGATCTGTGTGGTGCTGCGGAGGCGGGGCCGACGCACCATGCCCCGCAGACACGGCCTGCACCCACAGGGAGGAGGCAAGACTGGGGAGGGCCACAGGCACAGGAAGAATAAGTCTACCCTCCCTGAGGATGTGAAGCTGTGCACTCTGATCACGAGGCCCCCCACCACCGCCCCCCAACGCAAGAAAGTGACGTTAGTGAAGGAGGCAGTGGTGCACCCCCTGGAGGAGGAGCCGTTGGGGTGTGGTTTCCTGTCCCAGTTAGACCAGAGCCTCCCCCCACCTCACCCTTCTCACCGCCCTCCCCCCTCCGGACGAGCCACCAAGatctccctttctatctctgtGGTACCCGCGCCCTTCCCGTCACCGTCGGTGGCACCACGCTCCACCCTCGTACCCCGCCGTGCCACCTTCGAGGATGGCATGAGTGGCCGCGAGCGATGGAGGGAGCGCAATGCAGACAGGGAGAAGGGAgcgatggagaaggagagggtgaaaGGGACTCTGTCGCAGCAGAAGGAGAGGAAGGCGACCCAGATGCTGGCTATTGTGCTAGGTGTGTTCATCATCTGCTGGCTGCCCTTCTTCCTGACCCACGTGCTGAAGGCCCACTGTGGCAGCTGCTGTATCGCCCCCTCCCTGTACAGTGCTGTCACCTGGCTGGGATACCTCAACAGTGCCGTCAACCCCGTCATCTACACCACCTTCAACATCGAGTTCCGCAAGGCCTTCATCAAGATCCTAAACTGCTGAGTACAGGGAGgaaggggatggggggagagtgggagaaagTGTGAAAAGTGTAGAGGGGCAAAAAAAAGGTCAGAGACTTGAAATAAAACTaaagaagggaaagagaggggtgaAAACAAAGACCAGAAGGgaatggaaggagagatggaggggaagggggggacagagagagagagagtcaacagaATATTTCAAACAAAGCCCCCCAAAAATTGAACAGGTCAAACAGAAGAGCAAGTGAAGCAAGACCGATATACCAAATCAAAACAGACTTGGGAATTATAAAGGGGTTATGTACACTTCTGTAAATCTAAAACATAGCAGGGAGAGAGTAATATTCTGAAGGTTCTATGGGATGGGGTAGGGCACAAACAGTGGCAGAAGACTGTCCCACTCCTTTTGGGGATGACTAAGTAAGTGTATTACTCTCTGATACCCCTCTGAAGTATACTGTCTGCAGACATTGTCATTTAATTAACAGAGTTAAAACAGGACAGAGGTAATATTTTAAGGAGATACACAATAAATCTGCACAATTGTTCTCCAATAGCAGTCTTGTTGCGTCGTCCCAGTGTAAACATGCCTGTAagagatgtattatattaagaaTATGTTGGTGAAGATATGATGCcataataacatggtgatatgaTGCAATATGATAAGCGACTAATCAAGGTTTGTTCATGAGGTGTATGTATATATTGTTGTTTAGAGTGTGAGCTCTAAATATCTGTATTAGTGTTATTGTACAGATAAATGTAATAAATGATGTTCTACTCATATTGCTAGTCTGTCAAGTTTTCTGTactgcagggttggggtcaatttgaaTTGAAGTCAGTCAATTCTGGAAGTAAAGATATTTTCCAATTGATTAATAACGCAGAAAAAAGGTGTTTTCATTGACAACTTAATCTATGTTTTGGATTTTAAATTCAGATCACTTCCTTAATTGACTGACTTCAATTcaaattgaccccagccctgcaTTACTGTACTGGTCCAACAATGGACAGAAATGGATTAATTGACTAACTTGTTTTCAAAACTGTTTAAATACATTTGCTCTCTA
>TU274911
GAGAAGGGAgcgatggagaaggagagggtgaaaGGGACTCTGTCGCAGCAGAAGGAGAGGAAGGCGACCCAGATGCTGAAGGCCCACTGTGGCAGCTGCTGTATCGCCCCCTCCCTGTACAGTGCTGTCACCTGGCTGGGATACCTCAACAGTGCCGTCAACCCCGTCATCTACACCACCTTCAACATCGAGTTCCGCAAGGCCT

Function

NR:

description
D(2) dopamine receptor A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036973704.1 False 4575 mRNA 0.47 8 27111084 27127488
TU274911 True 205 TUCP 0.59 2 27112182 27112622

Neighbor

gene id symbol gene type direction distance location
LOC110516644 LOC106582613 coding downstream 8030 27098540 ~ 27103054 (-)
LOC110516631 LOC106582601 coding downstream 13825 27070914 ~ 27097259 (-)
LOC110516606 LOC106605168 coding downstream 46612 27049992 ~ 27064472 (-)
LOC110516475 NA coding downstream 132514 26928593 ~ 26978577 (-)
LOC110516494 NA coding downstream 171509 26933378 ~ 26939575 (-)
LOC110516655 LOC106582635 coding upstream 611 27128099 ~ 27151658 (-)
LOC110516678 LOC106605187 coding upstream 27192 27154680 ~ 27159987 (-)
lim2.5 LOC106605161 coding upstream 78627 27206115 ~ 27211770 (-)
LOC110516735 LOC106582654 coding upstream 84701 27212189 ~ 27228503 (-)
LOC110516750 LOC106582677 coding upstream 102147 27229635 ~ 27233978 (-)
G240665 LOC106584575 non-coding downstream 4320 27106014 ~ 27106764 (-)
G240559 NA non-coding downstream 109569 27001069 ~ 27001515 (-)
G240632 NA non-coding downstream 113679 26997060 ~ 26997405 (-)
G240688 NA non-coding upstream 33330 27160818 ~ 27161025 (-)
G240690 LOC106605163 non-coding upstream 35033 27162521 ~ 27162854 (-)
G240691 NA non-coding upstream 35699 27163187 ~ 27163396 (-)
G240694 NA non-coding upstream 37001 27164489 ~ 27164800 (-)
G240464 NA other downstream 436051 26674592 ~ 26675033 (-)
G240409 NA other downstream 541562 26569101 ~ 26569522 (-)
LOC110515750 LOC106582146 other downstream 1286327 25822812 ~ 25825108 (-)
LOC110515384 LOC106582009 other downstream 1874717 25171287 ~ 25236536 (-)
G240906 NA other upstream 57172 27184660 ~ 27185105 (-)
G242021 LOC106582922 other upstream 1127669 28205275 ~ 28256509 (-)
LOC110517114 pnrc2 other upstream 1148284 28275767 ~ 28280077 (-)
LOC110517222 NA other upstream 1591966 28719454 ~ 28725294 (-)

Expression


Co-expression Network