LOC110516678 (LOC106605187)


Basic Information

Item Value
gene id LOC110516678
gene name LOC106605187
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 27154680 ~ 27159987 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036973705.1
TAGTGGTCTTAAAATAAATTCATGACACCGTGACATTGTGAAACCAAAACAACTTCCTCCTCGCCTCTTCTTCCATCACACCTTCCTTCCCTCTGTTGTGTCTGTTGAGCATGCTTCTAGTCATGTGTCTGGACAGAATgctcctgctgtgtactgtgatcTTTGGCTTCTGGAGGGACACCCATGCTGTGTCCCCCGTGCCCTCCATTCCAAACCGTGTCCCTGCCTTGGTAGGCTCCTGCGTGGTCATCCCCTGCTCCTTCACTCCTTCAGCCTCTCATTCCGCCCTGGGCAGGCAGGGGAGAGTGGTCGGCGTGAGGTTGCGCTACAAGACTAGTCACATCTCCATCCTGCAGCGTACAGCTTTCAGTACGGAGGACAAATCCACAGTCAGCAGGGAGTTCCTGGGCCGGACATCCCTACAGGGAAACACGGACGATGGAGACTGCTCTGTAATGATTGACAGGGTCCACCTGGCTGACTCCAATGTTTATGAGCTGGCGTTGAAGGGCCATGGACAGAATGACTGGGGGAATGCGAGTAGGGTCAACATCGTTGCGTCAGAGTCCCCAGAGCTCCCAGTGATCAGCGGTGTGGGGGCAGCAACAGAAGGACAGATGGTGTCACTAAACTGCAGCATCAGTTACTCCTGTCCCTCCCAGGCCCCCACCCTCCAGTGGCGgtgggggagaggagttcagGAGAAAAGCAGCGAGTACGGGGAGCTGCAGGTACTCCAGCCCCAGGGCCAGGGGCCTACATTACGGACCTCTCTCACCTTTATCGCATCGTATCGCATCAAACCCAGAATGAGGTGTGAGGCAGTATATCCAGGAGGAAGAAGAGTATACACCGTAAAGGTGCTCCATGTGACATACAAGCCTGTCATCCTCCAACTCTCCTCCTACTGTGTTGTGAAGGGGTTGGAGGTTCTGTGTCGCTGTTCTGTGGACTCCAACCCCCGGCCAGGCGTAACCTGGAGTGTCAACGGTAGTGTTCCACCATACAGTTACAACACATCAGTAGGCTCAGAGAACGGTACACTAACAGCCATGCTGAGGGGCCACATGGACACTCCACTGAGGATAGTCTGCTTCGCCATTAATGCACTGGGCAACGACTCCCACACACTGCTTCAGGCAGAGGACGGTTCTCTGCTGTGGAAAGTGATACCTGCAGTATGCATCTCTTTGgtcaccttcctcctctctctacttctcctgTTCTGCTGTCGAAAGAGTTCAGGAAAACGTGTGCTGACCTGCAGACCTCCGGTGTATCCTGGGGACATGGGTATCTACCAGGATCGGATGCCCCTCTACATCAACTGCACTGAGGTCAACAACATCTACACCAATGGCAGTTACCAGCTGGTTTACCAGAACTGCACCCCTCTTTTCGTCCGGACCAAACAGACACATCCTATCGGGAGGCGAGGTGGGGAGAgacgaggtggagagaggagagggggagagaggagagggggagagagaagagggggagagagaagaggaggtgagagacgaggaggggagagaagaggaggagagagtcaaGGGGGCACGGTGGACAGAGGAACAAGAGACAGACAAAGCCCTGCCTACAATGACAATAACACTGAAACAGCTATCTACTTGGAGATCATCTGAGTTCATCTCTCAGTGTGGTATGTCATGGATAGCTCTGGTCCAGATCATTAGCACTAATGGCTTGGATCAGCGTTATGTCATGGAGTGGAAGAGAGCTCTTACATTGTATAACAAGACAAGCATGAACATACTGCTTGACTGATAATGGCACAATGATATGGTATCCGCTTGATATAATTTTGCAtgattatacatacagtaccaagtAGTTATGTGGCACATTTAGATTATCCTTCTCTCCTttttaatgatatatatatatatatatatatatataacttttgtGTGCATAATTGTAGACTTAATATCCCTAGCTACTTCATCAGTGCATATACTTGAAGATAATGGTCCACACACATTATTCACCTATTTCATGCAGTACATTTAGCATCATTACACATATAATGTCTGTATAATGATATTCTAGATGGGATGAACAGGATTGTATGATGTAATGATGATAAAGGTGTTGGACACACCTCTCTTATAAAACAATCACTTTTGTATATGTTTTATATAAATGTGCCCTTCTTCACCTCCCAGCCTGACCCTGTACTCGAGAGGATTGATGGTTACTAAAGCAAAAAAGCAATTTGTCACTACACTAACAAGATATTTCATATGCTGCCATATGTATGTTCTGGTTCTATATTCATGTGACAAAATAAAGCTTTTTTTCTGTGCTTTTAATGTTGATAAGAAATGA
>TU275056
CTTAATATCCCTAGCTACTTCATCAGTGCATATACTTGAAGATAATGGTCCACACACATTATTCACCTATTTCATGCAGTACATTTAGCATCATTACACATATAATGTCTGTATAATGATATTCTAGATGGGATGAACAGGATTGTATGATGTAATGATGATAAAGGTGTTGGACACACCTCTCTTATAAAACAATCACTTTTGTATATGTTTTATATAAATGTGCCCTTCTTCACCTCCCAGCCTGACCCTGTACTCGAGAGGATTGATGGTTACTAAAGCAAAAAAGCAATTTGTCACTACACTA
>TU275057
agaggaggagagagtcaaGGGGGCACGGTGGACAGAGGAACAAGAGACAGACAAAGCCCTGCCTACAATGACAATAACACTGAAACAGCTATCTACTTGGAGATCATCTGAGTTCATCTCTCAGTGTGGTATGTCATGGATAGCTCTGGTCCAGATCATTAGCACTAATGGCTTGGATCAGCGTTATGTCATGGAGTGGAAGAGAGCTCTTACATTGTATAACAAGACAAGCATGAACATACTGCTTGACTGATAATGGCACAATGATATGGTATCCGCTTGATATAATTTTGCAtgattatacatacagtaccaagtAGTTATGTGGCACATTTAGATTATCCTTCTCTCCTttttaatgatatatatatatatatatatatatataacttttgtGTGCATAATTGTAGACTTAATATCCCTAGCTACTTCATCAGTGCATATACTTGAAGATAATGGTCCACACACATTATTCACCTATTTCATGCAGTACATTTAGCATCATTACACATATAATGTCTGTATAATGATATTCTAGATGGGATGAACAGGATTGTATGATGTAATGATGATAAAGGTGTTGGACACACCTCTCTTATAAAACAATCACTTTTGTATATGTTTTATATAAATGTGCCCTTCTTCACCTCCCAGCCTGACCC
>TU275058
agaggaggagagagtcaaGGGGGCACGGTGGACAGAGGAACAAGAGACAGACAAAGCCCTGCCTACAATGACAATAACACTGAAACAGCTATCTACTTGGAGATCATCTGAGTTCATCTCTCAGTGTGGTATGTCATGGATAGCTCTGGTCCAGATCATTAGCACTAATGGCTTGGATCAGCGTTATGTCATGGAGTGGAAGAGAGCTCTTACATTGTATAACAAGACAAGCATGAACATACTGCTTGACTGATAATGGCACAATGATATGGTATCCGCTTGATATAATTTTGCAtgattatacatacagtaccaagtAGTTATGTGGCACATTTAG
>TU275055
GAGACTGCTCTGTAATGATTGACAGGGTCCACCTGGCTGACTCCAATGTTTATGAGCTGGCGTTGAAGGGCCATGGACAGAATGACTGGGGGAATGCGAGTAGGGTCAACATCGTTGCGTCAGAGTCCCCAGAGCTCCCAGTGATCAGCGGTGTGGGGGCAGCAACAGAAGGACAGATGGTGTCACTAAACTGCAGCATCAGTTACTCCTGTCCCTCCCAGGCCCCCACCCTCCAGTGGCGgtgggggagaggagttcagGAGAAAAGCAGCGAGTACGGGGAGCTGCAGGTACTCCAGCCCCAGGGCCAGGGGCCTACATTACGGACCTCTCTCACCTTTATCGCATCGTATCGCATCAAACCCAGAATGAGGTGTGAGGCAGTATATCCAGGAGGAAGAAGAGTATACACCGTAAAGGTGCTCCATGTGACATACAAGCCTGTCATCCTCCAACTCTCCTCCTACTGTGTTGTGAAGGGGTTGGAGGTTCTGTGTCGCTGTTCTGTGGACTCCAACCCCCGGCCAGGCGTAACCTGGAGTGTCAACGGTAGTGTTCCACCATACAGTTACAACACATCAGTAGGCTCAGAGAACGGTACACTAACAGCCATGCTGAGGGGCCACATGGACACTCCACTGAGGATAGTCTGCTTCGCCATTAATGCACTGGGCAACGACTCCCACACACTGCTTCAGGCAGAGGACGGTTCTCTGCTGTGGAAAGTGATACCTGCAGTATGCATCTCTTTGgtcaccttcctcctctctctacttctcctgTTCTGCTGTCGAAAGAGTTCAGGAAAACGTGTGCTGACCTGCAGACCTCCGGTGTATCCTGGGGACATGGGTATCTACCAGGATCGGATGCCCCTCTACATCAACTGCACTGAGGTCAACAACATCTACACCAATGGCAGTTACCAGCTGGTTTACCAGAACTGCACCCCTCTTTTCGTCCGGACCAAACAGACACATCCTATCGGGAGGCGAGGTGGGGAGAgacgaggtggagagaggagag

Function

NR:

description
sialoadhesin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036973705.1 False 2355 mRNA 0.48 7 27154680 27159987
TU275056 False 307 lncRNA 0.35 1 27154779 27155085
TU275057 False 662 lncRNA 0.37 1 27154835 27155496
TU275058 False 337 lncRNA 0.42 1 27155160 27155496
TU275055 True 1026 TUCP 0.54 6 27155568 27158664

Neighbor

gene id symbol gene type direction distance location
LOC110516655 LOC106582635 coding downstream 3022 27128099 ~ 27151658 (-)
LOC110516667 LOC106582624 coding downstream 27192 27111084 ~ 27127488 (-)
LOC110516644 LOC106582613 coding downstream 51626 27098540 ~ 27103054 (-)
LOC110516631 LOC106582601 coding downstream 57421 27070914 ~ 27097259 (-)
LOC110516606 LOC106605168 coding downstream 90208 27049992 ~ 27064472 (-)
lim2.5 LOC106605161 coding upstream 46128 27206115 ~ 27211770 (-)
LOC110516735 LOC106582654 coding upstream 52202 27212189 ~ 27228503 (-)
LOC110516750 LOC106582677 coding upstream 69648 27229635 ~ 27233978 (-)
LOC110516838 LOC106582709 coding upstream 364280 27524267 ~ 27526325 (-)
LOC110516862 LOC106582717 coding upstream 382577 27542564 ~ 27549343 (-)
G240665 LOC106584575 non-coding downstream 47916 27106014 ~ 27106764 (-)
G240559 NA non-coding downstream 153165 27001069 ~ 27001515 (-)
G240632 NA non-coding downstream 157275 26997060 ~ 26997405 (-)
G240688 NA non-coding upstream 831 27160818 ~ 27161025 (-)
G240690 LOC106605163 non-coding upstream 2534 27162521 ~ 27162854 (-)
G240691 NA non-coding upstream 3200 27163187 ~ 27163396 (-)
G240694 NA non-coding upstream 4502 27164489 ~ 27164800 (-)
G240695 NA non-coding upstream 5121 27165108 ~ 27165558 (-)
G240464 NA other downstream 479647 26674592 ~ 26675033 (-)
G240409 NA other downstream 585158 26569101 ~ 26569522 (-)
LOC110515750 LOC106582146 other downstream 1329923 25822812 ~ 25825108 (-)
G240906 NA other upstream 24673 27184660 ~ 27185105 (-)
G242021 LOC106582922 other upstream 1095170 28205275 ~ 28256509 (-)
LOC110517114 pnrc2 other upstream 1115785 28275767 ~ 28280077 (-)
LOC110517222 NA other upstream 1559467 28719454 ~ 28725294 (-)
G242539 LOC106582989 other upstream 1566983 28726970 ~ 28730375 (-)
LOC110516678 LOC106605187 other upstream 72 27154680 ~ 27159987 (-)

Expression


Co-expression Network