lim2.5 (LOC106605161)


Basic Information

Item Value
gene id lim2.5
gene name LOC106605161
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 27206115 ~ 27211770 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021595082.2
CCCATGGTCGCTCAATGGGAAAGAGCCACGTGCCTCTGCGCCCACCAGCTCAAGAGCATTTGTTCTCGCTGATGGTTGCTGTAAAGGATTTGCCTCCATAGACAGAAAAGCGGAGCGGATAACTTTTTGGAATTCGGCCTAGGGGGTCCTCTTCGACCTTTTGCTCACTCCGggcttccactctctctctttctctctcagtctttCCCTGCGGAAAGGTTGACACTTAAGAGGGGTTATTTTTCCTGAAGAACTCAGTGCGTAGAGCCTCGCCACCGTCGCAGTGTCACTCAGGATGCACAGCTTTATGGGAGGGGGCCTGTTTTGCGCCATAGTGGGGAACATCCTGCTGGTGGTCTCAACTGCGACAGACTACTGGATGCAGTACCGCTTGTCGGGGAGCTTCGCCCACCAGGGCctgtggaggtactgcatgtCGGGCAAGTGCTACATGCAGACGGACAGCATCGCCTACTGGAATGCCACCCGTGCCTTCATGATCCTGTCAGCCATGTCGTGCTTCGCGGGCATCATCGCAGGCATTCTCTCCTTTGCCCATTTCTCCGCCTTCGAGAGGTTCAACCGCTCCTTCGCTGCAGGGATCATGTTCTTCGTCTCCACTCTCTTTGTTCTGCTTGCAATGGCCATCTACACTGGAGTGACGGTGAACTTCCTGGGGAAGCGCTTCGGTGACTGGCGCTTCTCTTGGTCCTACATACTGGGCTGGGTGGCACTGCTCATGACCTTCTTTGCAGGAATATTTTACATGTGTGCCTACAGAATGCATGAATGCAGGAGAGTGGTGGGCCCACGCTAAAAGAGAGAGGAAAGCCAGTGAAAAGATTGCAAATCCGGGACATTTTGGCCACACAATTCCAACACGATGAAAGAATCAAGCTTACACCAATAGACATATCACTGAAATATAGAAACAGTACTAGGTAATTGAGAACCAAAGATTAATACAAATGTTTGGTCATGCCTGAGCAGTTTACGTGTCATTTTAATAAAGCTATAACTCTAACAGTAAAA

Function

NR:

description
PREDICTED: lens fiber membrane intrinsic protein-like isoform X1

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component
GO:0005212 structural constituent of eye lens molecular_function

KEGG:

id description
K24190 LIM2; lens fiber membrane intrinsic protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021595082.2 True 1032 mRNA 0.51 5 27206115 27211770

Neighbor

gene id symbol gene type direction distance location
LOC110516678 LOC106605187 coding downstream 46128 27154680 ~ 27159987 (-)
LOC110516655 LOC106582635 coding downstream 54457 27128099 ~ 27151658 (-)
LOC110516667 LOC106582624 coding downstream 78627 27111084 ~ 27127488 (-)
LOC110516644 LOC106582613 coding downstream 103061 27098540 ~ 27103054 (-)
LOC110516631 LOC106582601 coding downstream 108856 27070914 ~ 27097259 (-)
LOC110516735 LOC106582654 coding upstream 419 27212189 ~ 27228503 (-)
LOC110516750 LOC106582677 coding upstream 17865 27229635 ~ 27233978 (-)
LOC110516838 LOC106582709 coding upstream 312497 27524267 ~ 27526325 (-)
LOC110516862 LOC106582717 coding upstream 330794 27542564 ~ 27549343 (-)
LOC110516872 LOC106582751 coding upstream 342259 27554029 ~ 27564456 (-)
G240696 NA non-coding downstream 39834 27165801 ~ 27166281 (-)
G240695 NA non-coding downstream 40557 27165108 ~ 27165558 (-)
G240694 NA non-coding downstream 41315 27164489 ~ 27164800 (-)
G240691 NA non-coding downstream 42719 27163187 ~ 27163396 (-)
G240690 LOC106605163 non-coding downstream 43261 27162521 ~ 27162854 (-)
G240951 LOC106584591 non-coding upstream 65435 27277205 ~ 27286809 (-)
G240960 NA non-coding upstream 77525 27289295 ~ 27289513 (-)
G240966 NA non-coding upstream 88173 27299943 ~ 27300330 (-)
G241015 NA non-coding upstream 165712 27377482 ~ 27472982 (-)
G240906 NA other downstream 21010 27184660 ~ 27185105 (-)
G240464 NA other downstream 531082 26674592 ~ 26675033 (-)
G242021 LOC106582922 other upstream 1043387 28205275 ~ 28256509 (-)
LOC110517114 pnrc2 other upstream 1064002 28275767 ~ 28280077 (-)
LOC110517222 NA other upstream 1507684 28719454 ~ 28725294 (-)
G242539 LOC106582989 other upstream 1515200 28726970 ~ 28730375 (-)
LOC110517244 LOC106582991 other upstream 1569830 28781383 ~ 28786278 (-)

Expression


Co-expression Network