LOC110516750 (LOC106582677)


Basic Information

Item Value
gene id LOC110516750
gene name LOC106582677
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 27229635 ~ 27233978 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021595112.2
AACTAGCTACTGTTCATTGCTGAACCGAAGAATCGCTAACAATGTCGCGGGTTCTTGTTGGAGTTAAACGTGTAATTGACTATGCTGTCAAGGTAGCTACTTCCCCACTGTCTTGTATTTAAAAGCAATTCAACATTTCACGTGCAGAATTTCCATTCGAGACTTCCTATGGCtatggtagctagctaactactagCTAACGTAAGATCCGTGTGAAGCCCGATCAAAGCGGGGTggtgacagatggcgtcaagcactccatGAACCCCTTCTGTGAGATCGCCGTGGAGGAGGCCGTCAAACTCAAGGAGAAGAAGTTCATCAAAGAGGTGGTGGCCGTCAGCTGTGGGCCCTCGCAAGTAACGgagaccATCCGTACTGCACTGGCCATGGGGTGTGACCGCGGCATCCACGTGGAGGTCTCAGGAAAAGACTACGAGGCCATGGGACCCCTGCAGATCTCCAAGATCTTTGCTGCCCTGGCCAAGAAGGAGGAGGCCTCACTCGTCATCCTGGGCAAACAGGCCATTGACGATGACTGTAACCAGACGGGTCAGATGACGGCAGCCTTGTTAGACTGGCCACagGGCACATTTGCCTCTGAGGTGACCATCGATGGGGAAACGGTGAAGGTGGTGAGGGAAATCGATGGTGGTCTAGAGACCATCAAAATCAGCATGCCAGCTGTCCTCACAGCAGACCTTCGACTCAACACCCCCAGATACGCCACCCTGCCCAACATCATGAAAGCCAAGAAGAAGAAGATAGCCAACATGAAACCAGCAGACCTGGGGGTGGACATGGTGTCGCGAGTGGAGGTGTTGAGGGTGGACGAGCCCCCAACGAGACTGGCCGGAGTGAAGGTGGAGACGGTGGATGACCTGGTTGCCAAACTCAAGGCAAACGGAACAATCTAGAGGCCCCGTGGGAGCCAAAGGGGGAGTGCAGGGGACACACAGAGGGGTCTCTGTTTGAGAGATGGAACAAAGTAATTTAGCAAACGTGGAGGACTGGTTGCATAAGGCAGAACCCATCGCCACCCGGCCCTCTGTGTTTAACTCCGACTTCCATGATGGTAGCCTACTGACCTGGAATGAAGGGAGACTGAGAAACACTGTCCTATAGGAACCCACAGAGCCCAGAGGGTGAAGAAGAGGGCCTGTTGTTATTGTGCAATTTAATTCACATGGTACATCTGTATTGTAATTAATGTACCTTCTCTGTGAGTGTAGCTAACTCAAAAAATGTACAACTTCCAAGCCAGTAATGTAAGTCAGTAACTTTCATTCACCCATGTTTCTGTATGTGTTGCACTGTACATTCAAGAGAGTGTCACAATAACATTTTCATCTGTAACATGGACTTTTGAAAATTCTCATGAAACCCTACATTTACACATCTGGGCTATGCAGTTTGAGTTGGATGCCATGTGTAAATAAGAACCCAAAGTTGCAGAGCTGAATGTGCATTCAGGGTGTGTGATATGTCTACTGACTTGGTTTGTATAAAgtttatataaatataattatTTCTGGGTTGGGTGGCAGTTCCGGTTGAACAGTGTCTCTCAGTAGATGTGGGAAAAtgatcaaaaacacacacaaagttGACTTTTTACCATAAGCGCCTCTTCTGTTTAGATCGTACAGGATCCTACCATAACAATAAAGATGTCTTTTTCATATCTGGA
>XM_021595107.2
TGCATTTTTTTGTTGTCACAATAGAAGTGGCTATTGATTGCAATTCAATCTGTTTTGAATGAGTTATTCACATTGCAACGTTTTGAAATACGTGCTTTTATCTGAAAGGTTTCATCATTACCATACCTAGTGACGTTATCATTTGTGCTGCTAGCAGAATTACTAGTCTCCTGCTTCTTGGGTGAAGGTTCGTTGTGGTGACTCGGTAACTAGCTACTGTTCATTGCTGAACCGAAGAATCGCTAACAATGTCGCGGGTTCTTGTTGGAGTTAAACGTGTAATTGACTATGCTGTCAAGATCCGTGTGAAGCCCGATCAAAGCGGGGTggtgacagatggcgtcaagcactccatGAACCCCTTCTGTGAGATCGCCGTGGAGGAGGCCGTCAAACTCAAGGAGAAGAAGTTCATCAAAGAGGTGGTGGCCGTCAGCTGTGGGCCCTCGCAAGTAACGgagaccATCCGTACTGCACTGGCCATGGGGTGTGACCGCGGCATCCACGTGGAGGTCTCAGGAAAAGACTACGAGGCCATGGGACCCCTGCAGATCTCCAAGATCTTTGCTGCCCTGGCCAAGAAGGAGGAGGCCTCACTCGTCATCCTGGGCAAACAGGCCATTGACGATGACTGTAACCAGACGGGTCAGATGACGGCAGCCTTGTTAGACTGGCCACagGGCACATTTGCCTCTGAGGTGACCATCGATGGGGAAACGGTGAAGGTGGTGAGGGAAATCGATGGTGGTCTAGAGACCATCAAAATCAGCATGCCAGCTGTCCTCACAGCAGACCTTCGACTCAACACCCCCAGATACGCCACCCTGCCCAACATCATGAAAGCCAAGAAGAAGAAGATAGCCAACATGAAACCAGCAGACCTGGGGGTGGACATGGTGTCGCGAGTGGAGGTGTTGAGGGTGGACGAGCCCCCAACGAGACTGGCCGGAGTGAAGGTGGAGACGGTGGATGACCTGGTTGCCAAACTCAAGGCAAACGGAACAATCTAGAGGCCCCGTGGGAGCCAAAGGGGGAGTGCAGGGGACACACAGAGGGGTCTCTGTTTGAGAGATGGAACAAAGTAATTTAGCAAACGTGGAGGACTGGTTGCATAAGGCAGAACCCATCGCCACCCGGCCCTCTGTGTTTAACTCCGACTTCCATGATGGTAGCCTACTGACCTGGAATGAAGGGAGACTGAGAAACACTGTCCTATAGGAACCCACAGAGCCCAGAGGGTGAAGAAGAGGGCCTGTTGTTATTGTGCAATTTAATTCACATGGTACATCTGTATTGTAATTAATGTACCTTCTCTGTGAGTGTAGCTAACTCAAAAAATGTACAACTTCCAAGCCAGTAATGTAAGTCAGTAACTTTCATTCACCCATGTTTCTGTATGTGTTGCACTGTACATTCAAGAGAGTGTCACAATAACATTTTCATCTGTAACATGGACTTTTGAAAATTCTCATGAAACCCTACATTTACACATCTGGGCTATGCAGTTTGAGTTGGATGCCATGTGTAAATAAGAACCCAAAGTTGCAGAGCTGAATGTGCATTCAGGGTGTGTGATATGTCTACTGACTTGGTTTGTATAAAgtttatataaatataattatTTCTGGGTTGGGTGGCAGTTCCGGTTGAACAGTGTCTCTCAGTAGATGTGGGAAAAtgatcaaaaacacacacaaagttGACTTTTTACCATAAGCGCCTCTTCTGTTTAGATCGTACAGGATCCTACCATAACAATAAAGATGTCTTTTTCATATCTGGA

Function

NR:

description
electron transfer flavoprotein subunit beta-like isoform X1

GO:

id name namespace
GO:0009055 electron transfer activity molecular_function

KEGG:

id description
K03521 fixA, etfB; electron transfer flavoprotein beta subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021595112.2 False 1690 mRNA 0.48 7 27229635 27233771
XM_021595107.2 True 1783 mRNA 0.47 7 27229635 27233978

Neighbor

gene id symbol gene type direction distance location
LOC110516735 LOC106582654 coding downstream 1132 27212189 ~ 27228503 (-)
lim2.5 LOC106605161 coding downstream 17865 27206115 ~ 27211770 (-)
LOC110516678 LOC106605187 coding downstream 69648 27154680 ~ 27159987 (-)
LOC110516655 LOC106582635 coding downstream 77977 27128099 ~ 27151658 (-)
LOC110516667 LOC106582624 coding downstream 102147 27111084 ~ 27127488 (-)
LOC110516838 LOC106582709 coding upstream 290289 27524267 ~ 27526325 (-)
LOC110516862 LOC106582717 coding upstream 308586 27542564 ~ 27549343 (-)
LOC110516872 LOC106582751 coding upstream 320051 27554029 ~ 27564456 (-)
LOC118944661 NA coding upstream 359091 27593069 ~ 27609600 (-)
LOC110516971 LOC106582842 coding upstream 377107 27611085 ~ 27658858 (-)
G240696 NA non-coding downstream 63354 27165801 ~ 27166281 (-)
G240695 NA non-coding downstream 64077 27165108 ~ 27165558 (-)
G240694 NA non-coding downstream 64835 27164489 ~ 27164800 (-)
G240691 NA non-coding downstream 66239 27163187 ~ 27163396 (-)
G240951 LOC106584591 non-coding upstream 43227 27277205 ~ 27286809 (-)
G240960 NA non-coding upstream 55317 27289295 ~ 27289513 (-)
G240966 NA non-coding upstream 65965 27299943 ~ 27300330 (-)
G241015 NA non-coding upstream 143504 27377482 ~ 27472982 (-)
G241050 NA non-coding upstream 190292 27424270 ~ 27424578 (-)
G240906 NA other downstream 44530 27184660 ~ 27185105 (-)
LOC110516631 LOC106582601 other downstream 144575 27070914 ~ 27097259 (-)
G240464 NA other downstream 554602 26674592 ~ 26675033 (-)
G242021 LOC106582922 other upstream 1021179 28205275 ~ 28256509 (-)
LOC110517114 pnrc2 other upstream 1041794 28275767 ~ 28280077 (-)
LOC110517222 NA other upstream 1485476 28719454 ~ 28725294 (-)
G242539 LOC106582989 other upstream 1492992 28726970 ~ 28730375 (-)
LOC110517244 LOC106582991 other upstream 1547622 28781383 ~ 28786278 (-)

Expression


Co-expression Network