LOC118944509 (LOC106582725)


Basic Information

Item Value
gene id LOC118944509
gene name LOC106582725
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 27518304 ~ 27519539 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036964256.1
TGTTCGAACAGTCCTGTCACCACTGGAGTTTGTAATGAGAAACAAACGCATGGCAAATATCCTGGACCTGTGTGTGCTTCTGTTGATAGCAGGCCCAATACCAGCCCCATTAAGGATGGTAACAGCAGAGGGGTTAAAGGTGAGGCAGTGGCCCCCTTCACTCACTGTAATGCGGGGTCAGAGTGCCAACCTGTCCTGCCGTTTCGAGGCCACGTCCTACGGGGTGGACTGGTTCAAGATAGAGGGGGCCGAAAAGATCCCCATCCCAGATTCAGCTGGGCAGACGTCCCTGGTGATTACCGAGGTGTCCGTGGAGGATGCCGGTGTGTATTACTGCGAGGTCAACGTCCTACACAGAGATTCAGAGCGAGGGGGCGGCACAAAGCTCATTGTCCTGGGTAAGACAGAAGCaaattagcctggtcccaaatctgtttgtgctatcttgACAACTCATATGGCCATTGCTTGGCATGATAATGACCATAGGATTaagctttttttaaattattattattatatgggaccaggctaagaacTAGCTctaataaaaaatgtatacatcTGCCTTTATTCTTGGAATGTCTTATTGTAACTCATTAGAGTTTCTCATCATTTCTTCTgtctttgtttgtgttgttgttgttgtcattgttgTAATTGTCTCTCATTTGTATCCTTTGAGAATCTGTTTGAACCCAAACGGTTTGCAGGGAGGTTATTACATTTAAACCAGTGGGCT

Function

NR:

description
uncharacterized protein LOC109903800

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036964256.1 True 742 mRNA 0.46 2 27518304 27519539

Neighbor

gene id symbol gene type direction distance location
LOC110516825 iglon5 coding upstream 1228 27357397 ~ 27517076 (+)
LOC110505210 hepc1 coding upstream 231501 27286020 ~ 27286803 (+)
LOC100135935 LOC106584591 coding upstream 239933 27276905 ~ 27278377 (+)
LOC110516767 LOC106605158 coding upstream 253899 27240708 ~ 27264405 (+)
LOC118944508 NA coding upstream 278399 27239339 ~ 27239905 (+)
LOC110516883 LOC106582774 coding downstream 56272 27575811 ~ 27583456 (+)
si:dkeyp-97a10.2 LOC106582803 coding downstream 68676 27588215 ~ 27592913 (+)
dhdds dhdds coding downstream 163536 27683075 ~ 27696630 (+)
LOC110516984 NA coding downstream 186446 27705985 ~ 27723794 (+)
LOC110516993 LOC106605183 coding downstream 205650 27725189 ~ 27749972 (+)
G240883 NA non-coding upstream 45902 27471200 ~ 27472402 (+)
G240842 NA non-coding upstream 93797 27424277 ~ 27424507 (+)
G240764 NA non-coding upstream 217381 27300724 ~ 27300923 (+)
G240752 NA non-coding upstream 241561 27276534 ~ 27276743 (+)
G241147 NA non-coding downstream 33628 27553167 ~ 27553409 (+)
G241149 NA non-coding downstream 34490 27554029 ~ 27555335 (+)
G241152 LOC106582751 non-coding downstream 41578 27561117 ~ 27562189 (+)
G241155 NA non-coding downstream 45468 27565007 ~ 27565212 (+)
G241158 NA non-coding downstream 48291 27567830 ~ 27568045 (+)
G240244 NA other upstream 466350 27051186 ~ 27051954 (+)
G239752 meox2 other upstream 1189973 26327408 ~ 26328331 (+)
G239697 LOC106582257 other upstream 1298121 26213642 ~ 26220183 (+)
G239026 NA other upstream 1976691 25540769 ~ 25541613 (+)
G241150 LOC106582751 other downstream 36633 27556172 ~ 27558532 (+)
LOC110517275 LOC106583018 other downstream 1512172 28995823 ~ 29034924 (+)
G243679 LOC107756720 other downstream 2148840 29668379 ~ 29690796 (+)

Expression


Co-expression Network