LOC110516862 (LOC106582717)


Basic Information

Item Value
gene id LOC110516862
gene name LOC106582717
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 27542564 ~ 27549343 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021595180.2
acAGAGCTGTAAAAAAGTATTTTGATTTTCTCAATTTTCACAtattttgatactgaatgttattagATCTTTAACCAAAACCTAATGTTAGATAAAGGGCTCCTTCTATATAtgaaggcaagtcgtccaggtcctgaggcagcaaagcatccccaaaccatcacactaccacaacaatgcttgaccgttggtatgaggttcttactgtggaatgcagtgttttttTGCTAGACATAATGGGACCCTTCTCATCCAAAAGGTTTACTTAAGTTTGCCAAGATGCACCTGGAAGCAGCTGGGCGATCGTCAAGACtattggaagaatgttctatggacagatgagtcaaaagcttttttggatgacatgggtccctcataccaacagtcaagcatggcgatggtagtgtgatggttttgggatgctttgctgcctcaggacctggaggACTTGCctttttcacggcactgtatatgtactgcagggaatagggtgctatttgggacttaTACTTAGTATAgttggatgtaaacaaattgttCCTCACTGCCGATGGACTATAAATCCCTCCTTATCTTGGCTCTATGTTGATCTGTGTAATATGAGACTTGCTTTTCAACAGAAGTGTATGCGTGTGCCTgttcttgtgtttgtgtgtatgcgtgtgtgtgttgtatgtgaaaGACAGACCGGACACACAGCACATGTTCATCAACCAGAGGTTACTAAGAAGGaaatatatttattgaatatttatgaatttatttatgAAGTTAATCTAAGCAGCAGATCAACAGAGTTAGTGATACTCGATAGCAGAGATCGACTGGTTTGGCCATATtgctctggcaaatgccagatgggctcgTCCATCTTTAGCCCAGCGGGCCCGTCTAATTGTTTTAGGTTTTTTGGGCCGTTATTTGGCTATTAATGGGGGCATCAAGGAAATGAATTGGCCttatcatttttttgttgttgacatggTTGGCTTGGTTCCATGGAAAATGGTGAACAAGCATGTTGCAGTAGATGCACCAAGAAATGAAGTGTTGAAACAGTTTCCTTTTGAATGAACTTTGACCCACTTCTTTGTCCATCGTACCTTAAATCTGACGCAAGTACAACCATTCAAGGCACGTATAGACAATTGTGTGGTTGCTTTGCTCTATAAATGGGAACTAACGTCTTGCCAGTTGTAACCGCAACTCAAGTTTTTCATGAACAGTTTGTTTTTGGTTTATAGTAACGGTCTAGTTACTAGGGATGATGCATTGTAATTGACCGTATCCACTCACTATTCAGTCATTAATTCCATCATACAGTTTGAGTCTACACATGAACTCCTTGCTTGAGCACCAAGCAGAAATGTCATTTTATTCCACACTGCAGGATTTCCCCCAAATTAGACTCAACTACCTCACATGTTCAGTTGGCATTGTACTCAACATCGTACTCAAATAGCACATCGTTTTAGCCATTTTGTTGTACAGGGATGTTTGAATTTTGATGCTGAAGAGTCCAAAAAGTCTGTAAAAACTTAGCAAAAACGACAGCGTAATAAACTCGATGGCACGAGTTGTGATTTCACATGGTTTGTGTGAGTTCTTGTGTGGAAACAATCAGATAGGCTATGTTGACATGAACTAGAGGGGACAGTACATGTAATTAACATTCTCCACATGCTGAGTGTTCCATGTAAAAGGTTGGGTGAGAGGATTGTATTTTTTAGGTTATTAGTGTATTAAACAATAGATGGTATTCAGCTATTTATCCATAACCCTAATACTAAACCCAATTTGAAACCTTACTGTGACTACACACCTAACACATAATCCATAACCCGAGCCTCAGCTGCCAGGCCTCAcatcctaactctaaccctaaacataaACCCGAACTGTAATCTGAGTAAGCTGTTGCATATCAACAGAGTTGCAGTTGAGTTTTTTTTCGATAGTTTGAGCATTTACAGAAAGATAATCTGTTGTGgcgagtcccccccccccaaaaaaggaacATGTACATTTTCTTTCCTGTTTAGCACGAACTGAGGTATGTGACATCAAGTATGTTACATAGAGACTTTACCATTAACAGCACAGTTTATTTGGAGCCAAGCTTACTCACCATTTGACCATTTGACCAGGAgacgtgcctgtgtgtgtgtttgtgtgtttgctgACTGAGAATGCTGTCTGGGAATGAATCCGGGGATAGACACAGCCACAGCAGCCTGGTGCTGATGGTCTACATCATCACCTTCCTGATTGGCCTCCCTGCCAATGGTGTGGCCTTCTACACCTTTGGAAAGAAGGTGAGGCAGAAAGCCATGCCCATCGACATCCTGCTCCTCAACCTGACCGTCTCGGACCTCCTCTTTCTGCTCTTCCTGCCCTTCAAGATGAAAGAGGCGGCGGACGACAATGTATGGAACATGCCCGTCTTCCTGTGTCCATTGACCAGCTTCGTCTTCTACGCCACCATCTACAACAGCACCTTCTTTCTGACTGCCATCAGCGTTGAACGCTACCTGGGGGTGGCCTTTCCCATCAAGTACAAACTCATAAGACGGTCTTTGTACACCACGGTGGCTAGCGTTGCCTTCTGGGTGATCTCCATGGCGCACGTCAGTATCGTCTACATCATTCAATATTTAGTCGATTCCAGTGCCACCCAGGAAGGGGACATGTGTTACACAAATTTCACCCAGATGCAGCTGCAGGTCCTGATACCTGTCCGCCTGGAGCTCTTCCTGGTTCTATTCTGTGTACCTTTCTTCATCTGCTGCTTCTGCTACATCAACTTCATCCGAATCCTCTCTCAGCTGCCCAGCATCAACCCCAAGAAACGTCTGCGGGCCATCGGTCTGTCTCTGGCCACCCTGCTGGTGTTCATTGTCTGCTTCGCGCCCTACAACCTGTCACACTTAGTGGGCTTTGTTAACTGGGAGAGTCCCAATTGGCGAATGGCCGCACTCTTGTCCAGTACCATCAACGCCAGCCTGGACCCCATCATCTTCTACTTCTCCTCGTCGGCCCTCAGGTGTACCTTCCACCTCTTCCTGAAGAACCTGTTGGAGAGTGTGCAGGGGTTGTGCTTCTGCAGTAAGGCTCTCTACTGCCCTGTGTTGTTCTGCACCAGAACTCAGAAGGACAGCACACCAAGCTCCAATGACaacatgtgtcaaactcattccacagagggccaaggttctgcaggttttcgctccaccggtgtacttgattgatgaattaaggtcactaattggtaaagaactcccctcacccGGTTGTCTAGCCTTAAACAAAAACTTTCAGATTCTAGctcctccatggaatgagtttaacACCCCTGTTATAATGAGTGTGTAGTCAAGCCATATGCTTCACTTGCTACATGCTTGCTACATAAGTTAGCTAAATACCAGCCTGTGCAATGTGTTTATTGTATTTAGGTTCTTATGAAAAAGACTGAGGACTATGCTATCTGTCTTTATAAGTAGCCTATACATGAATCAGTtgtggtcagtgccgtttaagatgagggaggatgattttaGATTTtcttatgagcatggccttatttctattacagcatattagaTGACTgttattcatattccattcacccagctcaatgtaacatcgataggtttaggttactacatgatactgaAATTGtacctatacccatcatgaggttgctacaacctagcctatgaaggAAAGTTTACAACCTAGGTGCATAGGCTGAGAGAATTGTCACACATTCATtgccgccttgcacactcttgcctgcatctagctgacctATGTAGGGTGTAATCATTGGTCCAACAGTTGAAAATTAGTGTCTATTGGACAAATTTAGGTATGTTTATCCCCTATTCATcccatttgcttccgtttaagaaacatttttcaacagaatcagcagaatgaatacacccctgattacacacaaacagttcactttcattgCAGCCACATAAAGAAAGCCTGATCATTTTGATCGGTGTacatataattccttctcgcaactatctatgctctctcctcctctcaacttttcccttcacttgtggccttcagtgcacaacacatcagctgtctgtgaccaggctaaAAACCCTTTCCAAaacaaaccttcatatcatgactgctaaccgctacacacagcctacatcattgtcaacatagctactagaactaacgcgttagtaaacccgctacaatcatgcagtacagtgtactgtCAGAAAGCAGTTTAACAGTTACAACGCAGGCAGTgagaataaattaataaaaccaaaagcttaccttgacttggaaggaTGTGTAGTATGcatttgtatgtgtgtatttatgaTCATTTGAAGGTTTTATATTATTTCTGTTCCCCTTTATTTTCTATGACTTTTTTTGTAGTGATGACATTAAAATCTCTTTTTGCAT

Function

NR:

description
free fatty acid receptor 2-like

GO: NA

KEGG:

id description
K04328 FFAR2, GPR43; free fatty acid receptor 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021595180.2 True 4455 mRNA 0.43 2 27542564 27549343

Neighbor

gene id symbol gene type direction distance location
LOC110516838 LOC106582709 coding downstream 16239 27524267 ~ 27526325 (-)
LOC110516750 LOC106582677 coding downstream 308586 27229635 ~ 27233978 (-)
LOC110516735 LOC106582654 coding downstream 314061 27212189 ~ 27228503 (-)
lim2.5 LOC106605161 coding downstream 330794 27206115 ~ 27211770 (-)
LOC110516678 LOC106605187 coding downstream 382577 27154680 ~ 27159987 (-)
LOC110516872 LOC106582751 coding upstream 4686 27554029 ~ 27564456 (-)
LOC118944661 NA coding upstream 43726 27593069 ~ 27609600 (-)
LOC110516971 LOC106582842 coding upstream 61742 27611085 ~ 27658858 (-)
ago1 LOC106582818 coding upstream 109800 27659143 ~ 27682917 (-)
si:ch211-107n13.1 LOC106582885 coding upstream 220541 27769884 ~ 27787480 (-)
G241311 NA non-coding downstream 1083 27541139 ~ 27541481 (-)
G241135 NA non-coding downstream 1948 27540363 ~ 27540616 (-)
G241126 NA non-coding downstream 14600 27527665 ~ 27527964 (-)
G241122 NA non-coding downstream 18637 27523700 ~ 27523927 (-)
G241101 NA non-coding downstream 24709 27517605 ~ 27517855 (-)
G241316 NA non-coding upstream 2018 27551361 ~ 27551675 (-)
G241317 NA non-coding upstream 2710 27552053 ~ 27552333 (-)
G241318 NA non-coding upstream 3484 27552827 ~ 27553106 (-)
G241324 NA non-coding upstream 15325 27564668 ~ 27564888 (-)
G240906 NA other downstream 357459 27184660 ~ 27185105 (-)
LOC110516667 LOC106582624 other downstream 429942 27111084 ~ 27127488 (-)
LOC110516631 LOC106582601 other downstream 457504 27070914 ~ 27097259 (-)
G240464 NA other downstream 867531 26674592 ~ 26675033 (-)
G242021 LOC106582922 other upstream 705814 28205275 ~ 28256509 (-)
LOC110517114 pnrc2 other upstream 726429 28275767 ~ 28280077 (-)
LOC110517222 NA other upstream 1170111 28719454 ~ 28725294 (-)
G242539 LOC106582989 other upstream 1177627 28726970 ~ 28730375 (-)
LOC110517244 LOC106582991 other upstream 1232257 28781383 ~ 28786278 (-)

Expression


Co-expression Network