LOC110516883 (LOC106582774)


Basic Information

Item Value
gene id LOC110516883
gene name LOC106582774
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 27575811 ~ 27583456 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021595197.2
GAGCACTGGAATTTGGCTATGTTTAGAATGTCTGATAATATCAGGTACAAAATAATGAACGGAAGAGATTGACAGGAAAAGGATACAGTATTACGTAATATAGGACGCCGCCACAGAAATAGACTCCATGTCTCATTGTACAGTAGTACAGAACCATACAGAGAGGGTTCAAATGTTTCATGAAAGGTTTGCATATTTTGATAGCGATTCAAACCTTCGGTAAACTAAATGGCGCAGAGTCAAGAGAGTTAAGAGACGGAAGAGCAGCTACTGCTGTGGATACATTCTCTTCATTGTAAAATCTAAATGGCTCTGCAGATGTGATGGAAACACAGCACATCCTGGTCTGGTGTATTTGTCTGATCCTGGCCCTctTGCCGCACCTCCACCAGTGCCTGTCAGTGCATTTCCAGAACAAGGATCTCCTTTATGTGGCTCTGGGGAGAGACCTGGTCCTGCAGACCCAGTTCCAGATTACACCAACAGAGAAGATCGTCATGGTGATTTGGGACTACAAGACTGAGAAGGGTCAGGGACAGGTCAGGCTGGCCGATCACCAAGATTCACCTGGCAATCCAATAGACCAGAAGGGGGCCTTATTTAGGGTGGAGAATATAAGTTCATCTAACTATGGAGTCTACATCATCACTGTGACTAACCAGATGGGGAACGAGGAAGCAGCAAAGATACTTGTTAGAGAGAGTGTTGCTGCTCCTGTGGCGTCTCTGTCCCTCCAGTGTGAGGTGGCTAATGACAGGGCACAGTGGGACAGCCCAGTGGTTTCCTGGTTGGTGGATGGGGTAGAGGTCTCCAATCAGACAGCCAATCTCTCTGCAGATGGCAGGAACCTATACATGTCTGGAATGAAGGGCCACAACTACACATGTGTGGTCAACAGCAGCCTGGGGACTAGTGTTACACACTACATCACTGATTCTCCTACACCATCCCAAAGTAACCAATCCTGTGAGACTTGGTGTGTTGTAATATTGGCcaccatcgtcatcatcatcatcatcatcatagtgaTTCTAATGAAATGTGGATGTCTCTCCTGGAGATGCAAACAGCGGAGGACGAATGGGATTATATGACTTTAGGAGGTCCCTCGCGTTCCATTATCAGTCGTATGACATTTTGTTACACACTGAACGATCACACAAGTCTTTGGCACAGATGGGCACCTGCGGAGATGGTATGATATGAGAAGTTTAAATGTAATATTCTATTGCAGCATGTCACTCTGCCAGACACCAATGATCATTCCTATTAAGAGATGTGGCCCTATTCCGCATCAATAAAATATATTGATATGCCTTTttatcaaattaaattgtatttgtcacatgtttagcagatgttattgtgggtatagtgaaatgcttgttaTTGGTGTATTTGTATGCTGATTTGTGGTATTTGATGCAGTGTCTACACGTATATTTTGACTTATTATATCTTTGTATCTTTTTGTTAAGTACTGTATGCCATCACATGTATAAGTTAAAGTTAAACCTAAACCTACAATTGTGATGCCTATGTATGATATAaagcaaatggaaaaatgcacacTTTGCTACAAACTCAGCAAGAAAATAAacctcctctcactgtcaa
>XM_021595203.2
TGTGAGTAGAATGctcctccttttctctttctccttttgcTTTCCAACCTGTTTTGTtctcatctacagtgccttcggaaagttttcagaacctttgactttttccacattttgttacattccaGACAGGGTTGGCATTGTAAAATCTAAATGGCTCTGCAGATGTGATGGAAACACAGCACATCCTGGTCTGGTGTATTTGTCTGATCCTGGCCCTctTGCCGCACCTCCACCAGTGCCTGTCAGTGCATTTCCAGAACAAGGATCTCCTTTATGTGGCTCTGGGGAGAGACCTGGTCCTGCAGACCCAGTTCCAGATTACACCAACAGAGAAGATCGTCATGGTGATTTGGGACTACAAGACTGAGAAGGGTCAGGGACAGGTCAGGCTGGCCGATCACCAAGATTCACCTGGCAATCCAATAGACCAGAAGGGGGCCTTATTTAGGGTGGAGAATATAAGTTCATCTAACTATGGAGTCTACATCATCACTGTGACTAACCAGATGGGGAACGAGGAAGCAGCAAAGATACTTGTTAGAGAGAGTGTTGCTGCTCCTGTGGCGTCTCTGTCCCTCCAGTGTGAGGTGGCTAATGACAGGGCACAGTGGGACAGCCCAGTGGTTTCCTGGTTGGTGGATGGGGTAGAGGTCTCCAATCAGACAGCCAATCTCTCTGCAGATGGCAGGAACCTATACATGTCTGGAATGAAGGGCCACAACTACACATGTGTGGTCAACAGCAGCCTGGGGACTAGTGTTACACACTACATCACTGATTCTCCTACACCATCCCAAAGTAACCAATCCTGTGAGACTTGGTGTGTTGTAATATTGGCcaccatcgtcatcatcatcatcatcatcatagtgaTTCTAATGAAATGTGGATGTCTCTCCTGGAGATGCAAACAGCGGAGGACGAATGGGATTATATGACTTTAGGAGGTCCCTCGCGTTCCATTATCAGTCGTATGACATTTTGTTACACACTGAACGATCACACAAGTCTTTGGCACAGATGGGCACCTGCGGAGATGGTATGATATGAGAAGTTTAAATGTAATATTCTATTGCAGCATGTCACTCTGCCAGACACCAATGATCATTCCTATTAAGAGATGTGGCCCTATTCCGCATCAATAAAATATATTGATATGCCTTTttatcaaattaaattgtatttgtcacatgtttagcagatgttattgtgggtatagtgaaatgcttgttaTTGGTGTATTTGTATGCTGATTTGTGGTATTTGATGCAGTGTCTACACGTATATTTTGACTTATTATATCTTTGTATCTTTTTGTTAAGTACTGTATGCCATCACATGTATAAGTTAAAGTTAAACCTAAACCTACAATTGTGATGCCTATGTATGATATAaagcaaatggaaaaatgcacacTTTGCTACAAACTCAGCAAGAAAATAAacctcctctcactgtcaa

Function

NR:

description
uncharacterized protein LOC110516883

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021595197.2 False 1617 mRNA 0.43 6 27575811 27583456
XM_021595203.2 True 1461 mRNA 0.43 6 27576101 27583456

Neighbor

gene id symbol gene type direction distance location
LOC118944509 LOC106582725 coding upstream 56272 27518304 ~ 27519539 (+)
LOC110516825 iglon5 coding upstream 58735 27357397 ~ 27517076 (+)
LOC110505210 hepc1 coding upstream 289008 27286020 ~ 27286803 (+)
LOC100135935 LOC106584591 coding upstream 297440 27276905 ~ 27278377 (+)
LOC110516767 LOC106605158 coding upstream 311406 27240708 ~ 27264405 (+)
si:dkeyp-97a10.2 LOC106582803 coding downstream 4759 27588215 ~ 27592913 (+)
dhdds dhdds coding downstream 99619 27683075 ~ 27696630 (+)
LOC110516984 NA coding downstream 122529 27705985 ~ 27723794 (+)
LOC110516993 LOC106605183 coding downstream 141733 27725189 ~ 27749972 (+)
slc9a1a LOC106605147 coding downstream 242744 27826200 ~ 27874137 (+)
G241165 NA non-coding upstream 648 27574891 ~ 27575163 (+)
G241163 NA non-coding upstream 2906 27572685 ~ 27572905 (+)
G241158 NA non-coding upstream 7766 27567830 ~ 27568045 (+)
G241155 NA non-coding upstream 10599 27565007 ~ 27565212 (+)
G241152 LOC106582751 non-coding upstream 13622 27561117 ~ 27562189 (+)
G241201 NA non-coding downstream 48790 27632246 ~ 27632445 (+)
G241205 NA non-coding downstream 53082 27636538 ~ 27636771 (+)
G241207 NA non-coding downstream 54310 27637766 ~ 27637999 (+)
G241208 NA non-coding downstream 54621 27638077 ~ 27638291 (+)
G241213 NA non-coding downstream 60428 27643884 ~ 27644788 (+)
G241150 LOC106582751 other upstream 17279 27556172 ~ 27558532 (+)
G240244 NA other upstream 523857 27051186 ~ 27051954 (+)
G239752 meox2 other upstream 1247480 26327408 ~ 26328331 (+)
G239697 LOC106582257 other upstream 1355628 26213642 ~ 26220183 (+)
LOC110517275 LOC106583018 other downstream 1448255 28995823 ~ 29034924 (+)
G243679 LOC107756720 other downstream 2084923 29668379 ~ 29690796 (+)
G244292 LOC106583212 other downstream 2548943 30132399 ~ 30137564 (+)

Expression


Co-expression Network