dhdds (dhdds)


Basic Information

Item Value
gene id dhdds
gene name dhdds
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 27683075 ~ 27696630 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021581685.2
TTGCCTGGCCTAAAAAGATTGTCCGTGGCGCTATGCTTTCTTATCGGTCTGTTATGCTCCTGCTCACCGTCCAAGCACGATTCTCCAGCGGAACAAGAAAGGACCAGCCCCCCGCTCCCCGAATTCTAACACCAATTTACCTGAATAAGGTTCCTGTCAATCCACATGCAGAGAAATCTGTACAAACAGTTCCAGGCGGAAGTGGTCGGTCTTTTGATTACGTCACTCCATCGAATAAGGAAGGGGACGTCATCTTAAACTGGGTGTCAGAGTTTTTCAATATGTCGTGGATAAGGGAAGGTGAATTGAACCTCATTGAGAAGCTCTCAGCCAACATACTGAAGGCTGGCCCGATGCCCAAACATGTGGCCTTTATCATGGATGGCAACCGGCGCTATGCCCGCAAGCGTCATGTGGAGCGCCaagagggacacacacagggtTTTGACAAACTGGCAGAGACACTACGCTGGTGCCTGAACCTGAGCATCCATGAGGTCACCGTGTACGCCTTCAGCATCGAGAACTTCAAGCGGTCTAAAGACGAGGTGGACGGCCTGATGGAGCTGGCCAAGCAGAAGTTCATCAGACTGCTACAAGAACAGGAGAATCTGGAGAAGCATGGGGTGTGCATTCGGGTGTTGGGAGACCTGACTCTGCTGCCTCTGGACCTGCAGCAGCACATAGCCCGGGCTGTGGTGGCCACCAGGACTCATAACAAATGCTTTCTGAACGTGTGCTTTGCCTACACCTCAAGACATGAAATCGCTAATGCCGTCAGAGAGATGGCTTGGGGCGTGGAGCAGGGACTTATCAAATCTAGTGATGTGTCGGAGGCCCTGCTGGGTCATTGTCTGTACAGCAGTAACTCCCCCAATCCTGATCTGCTCATTCGCACGTCTGGAGAGGTGCGACTCAGTGACTTCCTGCTGTGGCAGACGTCCCACTCCTGCTTAGTGTTCCAGTCAGTCCTGTGGCCAGAGTACTCCTTCTGGAATCTGTGTGATGCCATTCTGCAGTATCAGCTCAATCACAGACCTCTTCAGAAAGCCAGAGATCAACACAGAGAGGGACAGGCCCTACAGCAGCATGAGGCAGACCGGGCCTGTGTTGCAGACCTCCTACAGCACCACGGCAATGGAAAGCCCCTGGATGCCCAGAGGAGACAGGAAGCACTGCTCAACTACACTGCCAGCCGAGAGGAACGGGTTCAGGACTTCCTTGGTGCACTCCAGCACAAGAGAGACTCCTTCCTCACTGACTTAACCAGCCAAGCTGCTCTGGCATAAAGAGGGGATGAGGGGAACACAATGCTCCCCATCTTGAATTGGGGGAGCaatcccatctctccatctcttccctaaAGGGCTGAGTGGTTTAAAACTTCTTATTTTGTATGAGTGATTTTACCCCTATGGGGCTATATGTGGGATATTTATGTGTGTATTCTAAGTCTGATCAAAGTCTAATAAAAAGATAAGTCTGGTAAAGAGCTAATGATTCTA
>XM_036963393.1
TTGCCTGGCCTAAAAAGATTGTCCGTGGCGCTATGCTTTCTTATCGGTCTGTTATGCTCCTGCTCACCGTCCAAGCACGATTCTCCAGCGGAACAAGAAAGGACCAGCCCCCCGCTCCCCGAATTCTAACACCAATTTACCTGAATAAGGTTCCTGTCAATCCACATGCAGAGAAATCTGTACAAACAGTTCCAGGCGGAAGTGGTCGGTCTTTTGATTACGTCACTCCATCGAATAAGGAAGGGGACGTCATCTTAAACTGTGAGTTGGAAGGGGTGTCAGAGTTTTTCAATATGTCGTGGATAAGGGAAGGTGAATTGAACCTCATTGAGAAGCTCTCAGCCAACATACTGAAGGCTGGCCCGATGCCCAAACATGTGGCCTTTATCATGGATGGCAACCGGCGCTATGCCCGCAAGCGTCATGTGGAGCGCCaagagggacacacacagggtTTTGACAAACTGGCAGAGACACTACGCTGGTGCCTGAACCTGAGCATCCATGAGGTCACCGTGTACGCCTTCAGCATCGAGAACTTCAAGCGGTCTAAAGACGAGGTGGACGGCCTGATGGAGCTGGCCAAGCAGAAGTTCATCAGACTGCTACAAGAACAGGAGAATCTGGAGAAGCATGGGGTGTGCATTCGGGTGTTGGGAGACCTGACTCTGCTGCCTCTGGACCTGCAGCAGCACATAGCCCGGGCTGTGGTGGCCACCAGGACTCATAACAAATGCTTTCTGAACGTGTGCTTTGCCTACACCTCAAGACATGAAATCGCTAATGCCGTCAGAGAGATGGCTTGGGGCGTGGAGCAGGGACTTATCAAATCTAGTGATGTGTCGGAGGCCCTGCTGGGTCATTGTCTGTACAGCAGTAACTCCCCCAATCCTGATCTGCTCATTCGCACGTCTGGAGAGGTGCGACTCAGTGACTTCCTGCTGTGGCAGACGTCCCACTCCTGCTTAGTGTTCCAGTCAGTCCTGTGGCCAGAGTACTCCTTCTGGAATCTGTGTGATGCCATTCTGCAGTATCAGCTCAATCACAGACCTCTTCAGAAAGCCAGAGATCAACACAGAGAGGGACAGGCCCTACAGCAGCATGAGGCAGACCGGGCCTGTGTTGCAGACCTCCTACAGCACCACGGCAATGGAAAGCCCCTGGATGCCCAGAGGAGACAGGAAGCACTGCTCAACTACACTGCCAGCCGAGAGGAACGGGTTCAGGACTTCCTTGGTGCACTCCAGCACAAGAGAGACTCCTTCCTCACTGACTTAACCAGCCAAGCTGCTCTGGCATAAAGAGGGGATGAGGGGAACACAATGCTCCCCATCTTGAATTGGGGGAGCaatcccatctctccatctcttccctaaAGGGCTGAGTGGTTTAAAACTTCTTATTTTGTATGAGTGATTTTACCCCTATGGGGCTATATGTGGGATATTTATGTGTGTATTCTAAGTCTGATCAAAGTCTAATAAAAAGATAAGTCTGGTAAAGAGCTAATGATTCTA
>NM_001159336.2
GATTACGTCACTCCATCGAATAAGGAAGGGGACGTCATCTTAAACTGTGAGTTGGAAGGGGTGTCAGAGTTTTTCAATATGTCGTGGATAAGGGAAGGTGAATTGAACCTCATTGAGAAGCTCTCAGCCAACATACTGAAGGCTGGCCCGATGCCCAAACATGTGGCCTTTATCATGGATGGCAACCGGCGCTATGCCCGCAAGCGTCATGTGGAGCGCCaagagggacacacacagggtTTTGACAAACTGGCAGAGACACTACGCTGGTGCCTGAACCTGAGCATCCATGAGGTCACCGTGTACGCCTTCAGCATCGAGAACTTCAAGCGGTCTAAAGACGAGGTGGACGGCCTGATGGAGCTGGCCAAGCAGAAGTTCATCAGACTGCTACAAGAACAGGAGAATCTGGAGAAGCATGGGGTGTGCATTCGGGTGTTGGGAGACCTGACTCTGCTGCCTCTGGACCTGCAGCAGCACATAGCCCGGGCTGTGGTGGCCACCAGGACTCATAACAAATGCTTTCTGAACGTGTGCTTTGCCTACACCTCAAGACATGAAATCGCTAATGCCGTCAGAGAGATGGCTTGGGGCGTGGAGCAGGGACTTATCAAATCTAGTGATGTGTCGGAGGCCCTGCTGGGTCATTGTCTGTACAGCAGTAACTCCCCCAATCCTGATCTGCTCATTCGCACGTCTGGAGAGGTGCGACTCAGTGACTTCCTGCTGTGGCAGACGTCCCACTCCTGCTTAGTGTTCCAGTCAGTCCTGTGGCCAGAGTACTCCTTCTGGAATCTGTGTGATGCCATTCTGCAGTATCAGCTCAATCACAGACCTCTTCAGAAAGCCAGAGATCAACACAGAGAGGGACAGGCCCTACAGCAGCATGAGGCAGACCGGGCCTGTGTTGCAGACCTCCTACAGCACCACGGCAATGGAAAGCCCCTGGATGCCCAGAGGAGACAGGAAGCACTGCTCAACTACACTGCCAGCCGAGAGGAACGGGTTCAGGACTTCCTTGGTGCACTCCAGCACAAGAGAGACTCCTTCCTCACTGACTTAACCAGCCAAGCTGCTCTGGCATAAAGAGGGGATGAGGGGAACACAATGCTCCCCATCTTGAATTGGGGGAGCaatcccatctctccatctcttccctaaAGGGCTGAGTGGTTTAAAACTTCTTATTTTGTATGAGTGATTTTACCCCTATGGGGCTATATGTGGGATATTTATGTGTGTATTCTAAGTCTGATCAAAGTCTAATAAAAAGATAAGTCTGGTAAAGAGCTAA
>XM_036963408.1
TgggtaggagcgttgggccatTAACAGAaatgttgctggtttgaatcccagagctgacatggttcaaatctgtcgttctgcccctgagcaaggcagttaacctccaACAAAAACTACCGATGACGTGGATGTCTACCAACATATTTTTACaaGGGTGTCAGAGTTTTTCAATATGTCGTGGATAAGGGAAGGTGAATTGAACCTCATTGAGAAGCTCTCAGCCAACATACTGAAGGCTGGCCCGATGCCCAAACATGTGGCCTTTATCATGGATGGCAACCGGCGCTATGCCCGCAAGCGTCATGTGGAGCGCCaagagggacacacacagggtTTTGACAAACTGGCAGAGACACTACGCTGGTGCCTGAACCTGAGCATCCATGAGGTCACCGTGTACGCCTTCAGCATCGAGAACTTCAAGCGGTCTAAAGACGAGGTGGACGGCCTGATGGAGCTGGCCAAGCAGAAGTTCATCAGACTGCTACAAGAACAGGAGAATCTGGAGAAGCATGGGGTGTGCATTCGGGTGTTGGGAGACCTGACTCTGCTGCCTCTGGACCTGCAGCAGCACATAGCCCGGGCTGTGGTGGCCACCAGGACTCATAACAAATGCTTTCTGAACGTGTGCTTTGCCTACACCTCAAGACATGAAATCGCTAATGCCGTCAGAGAGATGGCTTGGGGCGTGGAGCAGGGACTTATCAAATCTAGTGATGTGTCGGAGGCCCTGCTGGGTCATTGTCTGTACAGCAGTAACTCCCCCAATCCTGATCTGCTCATTCGCACGTCTGGAGAGGTGCGACTCAGTGACTTCCTGCTGTGGCAGACGTCCCACTCCTGCTTAGTGTTCCAGTCAGTCCTGTGGCCAGAGTACTCCTTCTGGAATCTGTGTGATGCCATTCTGCAGTATCAGCTCAATCACAGACCTCTTCAGAAAGCCAGAGATCAACACAGAGAGGGACAGGCCCTACAGCAGCATGAGGCAGACCGGGCCTGTGTTGCAGACCTCCTACAGCACCACGGCAATGGAAAGCCCCTGGATGCCCAGAGGAGACAGGAAGCACTGCTCAACTACACTGCCAGCCGAGAGGAACGGGTTCAGGACTTCCTTGGTGCACTCCAGCACAAGAGAGACTCCTTCCTCACTGACTTAACCAGCCAAGCTGCTCTGGCATAAAGAGGGGATGAGGGGAACACAATGCTCCCCATCTTGAATTGGGGGAGCaatcccatctctccatctcttccctaaAGGGCTGAGTGGTTTAAAACTTCTTATTTTGTATGAGTGATTTTACCCCTATGGGGCTATATGTGGGATATTTATGTGTGTATTCTAAGTCTGATCAAAGTCTAATAAAAAGATAAGTCTGGTAAAGAGCTAATGATTCTA

Function

symbol description
dhdds Predicted to enable dehydrodolichyl diphosphate synthase activity and polyprenyltransferase activity. Acts upstream of or within detection of light stimulus involved in visual perception and eye photoreceptor cell development. Predicted to be part of dehydrodolichyl diphosphate synthase complex. Predicted to be active in endoplasmic reticulum. Human ortholog(s) of this gene implicated in developmental delay and seizures with or without movement abnormalities and retinitis pigmentosa 59. Orthologous to human DHDDS (dehydrodolichyl diphosphate synthase subunit).

NR:

description
dehydrodolichyl diphosphate synthase complex subunit DHDDS-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0050908 detection of light stimulus involved in visual perception biological_process
GO:0042462 eye photoreceptor cell development biological_process
GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups molecular_function

KEGG:

id description
K11778 DHDDS, RER2, SRT1; ditrans,polycis-polyprenyl diphosphate synthase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021581685.2 False 1505 mRNA 0.51 10 27683075 27696630
XM_036963393.1 False 1517 mRNA 0.51 10 27683075 27696630
NM_001159336.2 False 1294 mRNA 0.52 9 27683767 27696622
XM_036963408.1 True 1396 mRNA 0.51 9 27684322 27696630

Neighbor

gene id symbol gene type direction distance location
si:dkeyp-97a10.2 LOC106582803 coding upstream 90162 27588215 ~ 27592913 (+)
LOC110516883 LOC106582774 coding upstream 99619 27575811 ~ 27583456 (+)
LOC118944509 LOC106582725 coding upstream 163536 27518304 ~ 27519539 (+)
LOC110516825 iglon5 coding upstream 165999 27357397 ~ 27517076 (+)
LOC110505210 hepc1 coding upstream 396272 27286020 ~ 27286803 (+)
LOC110516984 NA coding downstream 9355 27705985 ~ 27723794 (+)
LOC110516993 LOC106605183 coding downstream 28559 27725189 ~ 27749972 (+)
slc9a1a LOC106605147 coding downstream 129570 27826200 ~ 27874137 (+)
LOC110504004 LOC106582899 coding downstream 191606 27888236 ~ 28091436 (+)
LOC110517041 LOC106582907 coding downstream 455784 28152414 ~ 28163374 (+)
G241213 NA non-coding upstream 38287 27643884 ~ 27644788 (+)
G241208 NA non-coding upstream 44784 27638077 ~ 27638291 (+)
G241207 NA non-coding upstream 45076 27637766 ~ 27637999 (+)
G241205 NA non-coding upstream 46304 27636538 ~ 27636771 (+)
G241201 NA non-coding upstream 50630 27632246 ~ 27632445 (+)
G241246 NA non-coding downstream 1832 27698462 ~ 27702028 (+)
G241268 NA non-coding downstream 37517 27734147 ~ 27734398 (+)
G241273 NA non-coding downstream 42865 27739495 ~ 27739873 (+)
G241274 NA non-coding downstream 43373 27740003 ~ 27740291 (+)
G241150 LOC106582751 other upstream 124543 27556172 ~ 27558532 (+)
LOC110516767 LOC106605158 other upstream 418682 27240708 ~ 27264405 (+)
G240244 NA other upstream 631121 27051186 ~ 27051954 (+)
G239752 meox2 other upstream 1354744 26327408 ~ 26328331 (+)
G239697 LOC106582257 other upstream 1462892 26213642 ~ 26220183 (+)
LOC110517275 LOC106583018 other downstream 1335081 28995823 ~ 29034924 (+)
G243679 LOC107756720 other downstream 1971749 29668379 ~ 29690796 (+)
G244292 LOC106583212 other downstream 2435769 30132399 ~ 30137564 (+)

Expression


Co-expression Network