LOC110516984


Basic Information

Item Value
gene id LOC110516984
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 27705985 ~ 27723794 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005042471.1
TATCTATAGGCTGGCCTGGTTTCCTATATAGCTTGATACGTGAACATCGTGTGCTTGTGCACCCTCAATAGTTTGGGCACGTTTCAACCAGCTCAATCCGAGCAGTTGCAGGTCTCCAGACCAGAGCTGCATCAACACACCGCGCAAAGAAACCAACCCCAGACCCACTACAGACATGATCATCAGACTGGGCAGGCTGACCCCTGGATACTTCCGCCTCCTACAGagACAGGTGGCGGGTGAGGTGCAGACCCAGCCACAGGACCGCGCCGTCAACCAGATAGCCATGATGCTGGCCATCATGGGCCTGAGCCTGTCCTACTACAGTGCCAAACGGATGACCGAGAAGGTCCATAGGCTCCAGAAGAGAAGAGATCCCCATACGCCCtgaagagaccccccccccccccccccccccccccatggagaTGACAGTGTCGGTGTCCAGAACACCTTTTCACAACCAATCAGTCGTAGTCACGTCGTTCAGACACTGGAGTTTTACTGGGATCACTCTCACTGCGAGGAGAATTCGGGGGCTGCTGCTGTTAAGGGTATCTTAATTTTTCACCCCAATGGATGTTGGAGGACCTTGTGGGTCAATtattttggggggtgggggggtggtggTGTTGTATGTGGGAAAGGCCCATGGTGAGGTTTGTGTGGTCCTGATAAAGTTTGGGGGGTAAAAAGTACAACCAGCTGTCTATGGTCAGGCTGGGCCCCTGCTTCAGTCGTTGCCAGGGTACATGCGTGCAGGATGCCGTCAATACTGTTCTGAGCTAAAAAGGGATAGAGAAATGCTTAACTGAATATTCTAATGTACTGTGAATCTTGCCAGTGAATCTTGCCAACTATATGACAAGTTTGTCTAAAATAACTGAACAGTAATTATTTTTTAATTAAGGGAAGGCTATCTGCACTTGAGATGTATCTAGTAATGACTGAAGGCGGGCCCGTAGTGTGGTTGAAAGTGGGAAGAAAGGAACCCTCTTAGGTTTTTTGTAATTCCgtattgttaaaaaaaataaaagtgagCCATGTGAACTAGATGTGGAGGAGTCTCAAACTGGTCAATAATTCCACACATGTTCAATATCTGTTAATGTCAGACACAAACAACCGTACATTACTGGTGAAATTAAGTATTTTAACGTTTTGGGAACTTGCTTATCCAAATATATGAAAGAAAGGCACTTAAATCACAACTTTGTTTTTCACAATGTTTCTAGATTAAAGTCTTGATAAAAATGTTTGGCTTTCTTTAAAGAACTCGATCTGCAATAGCTACTAGGTGTTACCACAAATATTCTAGCTTTAGTAAACGTTGCATGGGTGTGCAGCTTTTAATCTCTTCGTTAAGACTGTCACATTCAGTTTTTCTAAAGGATGATAACCATGAATGTATATTTCTGTGATGTTTTTATAGAAAAGCTGTGACTTGAATAAAGCTGTGACTTGAATAATAA
>XR_002472494.2
GGAGCACAAAGCTGAAGCTTTCTCAGTAGTTCTCCCGTCACACTGTTGGGTACCCAAACTACCAGGTGCTCTTTGGTTGGCTGGGCGCTAGATGGTTGGAGGTTAGACTGGCCAGTTGGAGTAGCAGCCACAGGATCTTTACCACCACAGAGCCTGTGGAAGGTGTGGAGGatccaacttttttttttacgaCTGCATTCCGGACCGCCTTTTTCCCTGGAGCAAGTCGGAAACCCTGAATTTCAAGTCATTTTTTTGCCGCATTCCTCCTTTTTGCCTGAACAAAAGGGTGTAATCGCAACCAGGTCTCCAGACCAGAGCTGCATCAACACACCGCGCAAAGAAACCAACCCCAGACCCACTACAGACATGATCATCAGACTGGGCAGGCTGACCCCTGGATACTTCCGCCTCCTACAGagACAGGTGGCGGGTGAGGTGCAGACCCAGCCACAGGACCGCGCCGTCAACCAGATAGCCATGATGCTGGCCATCATGGGCCTGAGCCTGTCCTACTACAGTGCCAAACGGATGACCGAGAAGGTCCATAGGCTCCAGAAGAGAAGAGATCCCCATACGCCCtgaagagaccccccccccccccccccccccccccatggagaTGACAGTGTCGGTGTCCAGAACACCTTTTCACAACCAATCAGTCGTAGTCACGTCGTTCAGACACTGGAGTTTTACTGGGATCACTCTCACTGCGAGGAGAATTCGGGGGCTGCTGCTGTTAAGGGTATCTTAATTTTTCACCCCAATGGATGTTGGAGGACCTTGTGGGTCAATtattttggggggtgggggggtggtggTGTTGTATGTGGGAAAGGCCCATGGTGAGGTTTGTGTGGTCCTGATAAAGTTTGGGGGGTAAAAAGTACAACCAGCTGTCTATGGTCAGGCTGGGCCCCTGCTTCAGTCGTTGCCAGGGTACATGCGTGCAGGATGCCGTCAATACTGTTCTGAGCTAAAAAGGGATAGAGAAATGCTTAACTGAATATTCTAATGTACTGTGAATCTTGCCAGTGAATCTTGCCAACTATATGACAAGTTTGTCTAAAATAACTGAACAGTAATTATTTTTTAATTAAGGGAAGGCTATCTGCACTTGAGATGTATCTAGTAATGACTGAAGGCGGGCCCGTAGTGTGGTTGAAAGTGGGAAGAAAGGAACCCTCTTAGGTTTTTTGTAATTCCgtattgttaaaaaaaataaaagtgagCCATGTGAACTAGATGTGGAGGAGTCTCAAACTGGTCAATAATTCCACACATGTTCAATATCTGTTAATGTCAGACACAAACAACCGTACATTACTGGTGAAATTAAGTATTTTAACGTTTTGGGAACTTGCTTATCCAAATATATGAAAGAAAGGCACTTAAATCACAACTTTGTTTTTCACAATGTTTCTAGATTAAAGTCTTGATAAAAATGTTTGGCTTTCTTTAAAGAACTCGATCTGCAATAGCTACTAGGTGTTACCACAAATATTCTAGCTTTAGTAAACGTTGCATGGGTGTGCAGCTTTTAATCTCTTCGTTAAGACTGTCACATTCAGTTTTTCTAAAGGATGATAACCATGAATGTATATTTCTGTGATGTTTTTATAGAAAAGCTGTGACTTGAATAAAGCTGTGACTTGAATAATAA
>TU275655
TTCTCCCGTCACACTGTTGGGTACCCAAACTACCAGGTGCTCTTTGGTTGGCTGGGCGCTAGATGGTTGGAGGTTAGACTGGCCAGTTGGAGTAGCAGCCACAGGATCTTTACCACCACAGAGCCTGTGGAAGGTGTGGAGGatccaacttttttttttacgaCTGCATTCCGGACCGCCTTTTTCCCTGGAGCAAGTCGGAAACCCTGAATTTCAAGTCATTTTTTTGCCGCATTCCTCCTTTTTGCCTGAACAAAAGGGTGTAATCGCAACCAGGTCTCCAGACCAGAGCTGCATCAACACACCGCGCAAAGAAACCAACCCCAGACCCACTACAGACATGATCATCAGACTGGGCAGGCTGACCCCTGGATACTTCCGCCTCCTACAGGTGGCGGGTGAGGTGCAGACCCAGCCACAGGACCGCGCCGTCAACCAGATAGCCATGATGCTGGCCATCATGGGCCTGAGCCTGTCCTACTACAGTGCCAAACGGATGACCGAGAAGGTCCATAGGCTCCAGAAGAGAAGAGAAAGGCCCATGGTGAGGTTTGTGTGGTCCTGATAAAGTTTGGGGGGTAAAAAGTACAACCAGCTGTCTATGGTCAGGCTGGGCCCCTGCTTCAGTCGTTGCCAGGGTACATGCGTGCAGGATGCCGTCAATACTGTTCTGAGCTAAAAAGGGATAGAGAAATGCTTAACTGAATATTCTAATGTACTGTGAATCTTGCCAGTGAATCTTGCCAACTATATGACAAGTTTGTCTAAAATAACTGAACAGTAATTATTTTTTAATTAAGGGAAGGCTATCTGCACTTGAGATGTATCTAGTAATGACTGAAGGCGGGCCCGTAGTGTGGTTGAAAGTGGGAAGAAAGGAACCCTCTTAGGTTTTTTGTAATTCCgtattgttaaaaaaaataaaagtgagCCATGTGAACTAGATGTGGAGGAGTCTCAAACTGGTCAATAATTCCACACATGTTCAATATCTGTTAATGTCAGACACAAACAACCGTACATTACTGGTGAAATTAAGTATTTTAACGTTTTGGGAACTTGCTTATCCAAATATATGAAAGAAAGGCACTTAAATCACAACTTTGTTTTTCACAATGTTTCTAGATTAAAGTCTTGATAAAAATGTTTGGCTTTCTTTAAAGAACTCGATCTGCAATAGCTACTAGGTGTTACCACAAATATTCTAGCTTTAGTAAACGTTGCATGGGTGTGCAGCTTTTAATCTCTTCGTTAAGACTGTCACATTCAGTTTTTCTAAAGGATGATAACCATGAATGTATATTTCTGTGATGTTTTTATAGAAAAGCTGTGACTTGAATAAAGCTGTGACTTGAATAATAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005042471.1 False 1472 mRNA 0.45 3 27705985 27723794
XR_002472494.2 False 1666 mRNA 0.46 3 27715014 27723794
TU275655 True 1362 TUCP 0.44 4 27715043 27723794

Neighbor

gene id symbol gene type direction distance location
dhdds dhdds coding upstream 9355 27683075 ~ 27696630 (+)
si:dkeyp-97a10.2 LOC106582803 coding upstream 113072 27588215 ~ 27592913 (+)
LOC110516883 LOC106582774 coding upstream 122529 27575811 ~ 27583456 (+)
LOC118944509 LOC106582725 coding upstream 186446 27518304 ~ 27519539 (+)
LOC110516825 iglon5 coding upstream 188909 27357397 ~ 27517076 (+)
LOC110516993 LOC106605183 coding downstream 1395 27725189 ~ 27749972 (+)
slc9a1a LOC106605147 coding downstream 102406 27826200 ~ 27874137 (+)
LOC110504004 LOC106582899 coding downstream 164442 27888236 ~ 28091436 (+)
LOC110517041 LOC106582907 coding downstream 428620 28152414 ~ 28163374 (+)
myom3 LOC106582914 coding downstream 452046 28175840 ~ 28254021 (+)
G241246 NA non-coding upstream 3957 27698462 ~ 27702028 (+)
G241213 NA non-coding upstream 61197 27643884 ~ 27644788 (+)
G241208 NA non-coding upstream 67694 27638077 ~ 27638291 (+)
G241207 NA non-coding upstream 67986 27637766 ~ 27637999 (+)
G241205 NA non-coding upstream 69214 27636538 ~ 27636771 (+)
G241268 NA non-coding downstream 10353 27734147 ~ 27734398 (+)
G241273 NA non-coding downstream 15701 27739495 ~ 27739873 (+)
G241274 NA non-coding downstream 16209 27740003 ~ 27740291 (+)
G241287 NA non-coding downstream 38095 27761889 ~ 27762108 (+)
G241150 LOC106582751 other upstream 147453 27556172 ~ 27558532 (+)
LOC110516767 LOC106605158 other upstream 441592 27240708 ~ 27264405 (+)
G240244 NA other upstream 654031 27051186 ~ 27051954 (+)
G239752 meox2 other upstream 1377654 26327408 ~ 26328331 (+)
G239697 LOC106582257 other upstream 1485802 26213642 ~ 26220183 (+)
LOC110517275 LOC106583018 other downstream 1307917 28995823 ~ 29034924 (+)
G243679 LOC107756720 other downstream 1944585 29668379 ~ 29690796 (+)
G244292 LOC106583212 other downstream 2408605 30132399 ~ 30137564 (+)
G244691 NA other downstream 2907976 30631770 ~ 30632533 (+)

Expression


Co-expression Network