si:ch211-107n13.1 (LOC106582885)


Basic Information

Item Value
gene id si:ch211-107n13.1
gene name LOC106582885
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 27769884 ~ 27787480 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021595258.2
ACTCACCATTGTGCCACGGAGTCGCACGGCTGCTACAACGTAAACTACGTGTTCTGGCAGTCTGCGCAAGAAGCGGACGCAGCAGAGCAGACAAGAAGCGTGCAGCACTAGCGGTCTGTCAGTCCGACTATCTGCCCAATAAACTAGGCTACACAAGAAGCGGAGCAGATAACCACTCGGACATATCCATGTCCCGTCCCAGCGGTTGAAAGAACAGAAAGAAACGATAGGACACCTTCACATGCATGAAGAGCAACACAACACAAGGGGACTGTGGGTGCAGGTGAGGACAAGGGCAAGTCCTTCATCCGTCCGTCAACGTCAGAAGTGTCCCGGTGCCGCCCACCCTCAGGTCACCTCAACCACGACGGCGGCCGAACAAATAGGCATCTCTCGACCCAGCGTCCCTCAGACTGCCTGCCTTCACCAAGCAAATATTTGTGGCCGTTATATCTCATTTCCCAGGTTTAACCTTCAGAGAAAAGATCAATGGAAAAGGAGTGATCGctcagagagagaccgacagagagaacAAGAAAGTAAGGGGGGGGTGAAAAATAGTAACCCTTTCAAAGTGAACTCTGCCTGCTATTTCTGCTGCGCTGTGGGCAGGAGAACGTCCCATTTGGGAGTGCTGTTGGCCAATGGCAACAGGATTTCCCTGCACCCTGCCCATTTATCCAAATTCCTGTGTAAATACTGGATAGAGATATCAATTTGTCTGGGCTCCAATAGTGCCCAGAAAGAGACTATAAGCTATCTATAGAAAGCTCCACAACAAACTTGGCCTCTGTGGTCACAGAATTGCCACCTAGTTATTTCCTCAGTAGAGAGATCCAGGAACTGTGAGTGAGGATGGGAGCTGCTATGCTTTAGTTCTAAAGCAGAAAGCTTACTGAAAAGCTCACACCAGACTAGAACTTGAAAGGTACAACAATAGATTCAGGGGGAACACCTTTGGCAACTAGCAGCAGGAGAAGGCAGCCATTTTGGGGCTgctgttttgatgtctttaccCAGAAAGGTGGAGCACCATGAAGCCGTTAACACCCATAGGATCCCCCTCACCTCTGAGGCTCCTCAACAAGGGCCCAGACTACCTGCGTAGGCAGATGGAGGGTGGGGGCCAGGGCCGTTCCATCAGCGCTGTAGAGAGACTCGAGGCAGACAAGGCCAAGTATGTTAAGAGCCAGCAGGTCATTAACACCAAACAGGAGCCAGTCCTGGTGCCTtgcacaccacctcctccacaccgTCGTCCCCACACCGTGCCTGGGTGCCTCACACCACGACTGCCACCCCGCCGATCCTCTGCTCCTTTCACCACCCTGACCGCCCCCCTCACCGTACGAGATGAGAACGAGAATGATGACTCGAGGAAGGAGAATCGGAGGACGTCGGTGGATGTGGAAGCACGGAACAGGAGTAACGCCAACGAGGTGACCCCACCCAGCCCCAGAAACCCCTGGACTCCACCCTCCATACCCCTGGTAGCCCCTCACAGTGCCCCCATCCTGAGGAGGAGCACCGGTAAGCGCATGCTGCGTCCTGACTCCCTGGTCATCTACCGGCAGAAGAAAGAGTGCAAAATCCTGCCTAGTGGTGGCATCATATTGGGGAACTCCAACATGGAGATAAAGGGGTACAACTTTGTCCGCCGCCTCTTCCAGGGCTCCATGCGGGAGAAGAGTGGCGGGGGCGAGGGGGGCACCCAGAAGATGGTGATCAGCGAGGAGAAGGCTTTGTCGCGGGATGGTGACTCACGCATGTCTTGGACCAATGACAAGGACACCGTGGACGGGGGACAGGTAGGGCCAGGTAGCCGGAGATCCAGTAAGACAGACCACGAGCGCTCACCGCTTCCCAGCCCTGGCTTCAGCTGTACATCGGAGCGGACTAAGAATGGTGTTAGCTGTGTTAGCAATGGCACTACCAATGGTACCAGAAACGGCAATGGCATCACCAAGGGCAATGATGTAAGTGACCACACTGACAACGAGGCGGACATCTGGAAGCGGgtgccgccaccaccaccaccgcggTTGCGTTCAGGACTACAACGCTCCAAGTCAGATCTACTTCTGCGATGCTCAGTGGCGTTGTCTGACCAGGAGCATTTCTTTGACTACTGCGGGCTGGACCTGGACATGGTGGACCGGCTGGGGCCTGAGAACTTCCTGGGTGGGATCAGCGACGTAGACACACTCTCATTGGTGCTGAGGAGCATAGGGGGAGGGGGCGGTGGCTCGGAGCCCAGCGAATTCTCCCGCCACTCAGGAGAGGCAGGGCTTTTCCAGGAGGAGGTGGCCGAGAAGCTGACTACGGGGGTGTCAATCATCGAGAGGAATGCCCGTGTCATCAAGTGGCTCTACAGCTGCAAGAACGCAGCACAGGAGGGGCCCAAAGAGTCCACTGTTTAGACACCACTTCTCTAAAAGAAGACATGTTCCCCTGAAGGACAGAGACTTTGTTATTGTGCCGTAATCCTTAGTCTTCTCCCAGGTTGATATGCTGTATTTATAGGTCCTATGGGAAGTGTGAGGGGTGTGGATGGCCTACACCTTATTTTCAAGTGGAATCATTTACCCCTGCATACGTTTTGTCAGTGAGTGTGTGATTGTGTTGGATACGGCTGTCCCACCCACTCCCTATCCTAACCAGTAGGTATTGTCGGATCTATAGTGACTGACAGCCCCCCCTAAGCTCCGCTCTGACTCTACAACCAACAATAAGGCGCATCAGTGAGAAAAGAACAGGCACAGATGAGGCTGTATTTAGTGCCGTGGACGCGCAACAACACAACCCTACACTCTTCTCTCGAACATATCAATAATTTAGAATGGAAAACCACAGAGGGGTTTTTTTCTGAACTGGAGTGAACCGTGAGTACCTCATTCCGAACTGTGCCAGTTTAGTTTGTGTGtagcttttcttttttttccttcttaaaaCGCAGGCGTTGGAACAGGCACGCGAGGGACCCCTGTGGGGTTGTTAATGCACTGAACTGGACgagaagtgtgagagagaggcaacgagtgagagagagaaagagaaacagcttGGACTTTTTAGAGAGAATCCTCACCCATTAAACACTGAGCATAATACTCTAGAGGCAGTAATGCCGGGACAGTGGTATTTGACAAGGAGGGACGCAGGGTCGGTTATTTTGATCATACATCACCTGAACCTTACCCCAAGGAGAGGTAACTCTGACACAGCAGCTACTGACCACTGATACGTTAGTTGTGATACAATTGTTATTTGACAGCTACTGCTATGTAATTGGCTGGCAGCAAACTCTGCATTGCCTTCACCCCTGTTGCCACTGTGTAAGCTACCTTGTTGCCATTGCAGGTAGAAATTAAAGTGTGATAAAGTGTTCTTTTACTGGATAACTGGTCAATTCCTTGTGGAATAAAGTTGCTTTTTTACTTCGCTTCCACAAAATATTAACTTCAAGGGCATTTTAAATTCCTCACCAAACAAAGATTATTTTGTTTCTATTTTCATGTAACAGATTTCACCTTAGTAGGTGTTCAAAGTCTAAGGGACCATGATCTATCAGGTTGCCAAGTATTTGAGAGTGACACCTTCACAGAGCTGACGTTTACAGAGTCCCCCAGACTCCCTCGAGGGTGGGGGTTGGGGTTCATCTCCCCCTGGGGCCAATGGTCATCTGGCTCTCCCCCACAGGAGACCCCAGGCCTGAGGGAGGATGGTAAAGGGGGGTAagaactccctctctccccctctacctctaatAGCCATAGATCCTACCTCACTTCATCAATCTGTCATTGATGCCCCTTTTATCTAAATGAAAATGTCACGTTGATCAGAGTTCTCCCAGAGATACCCCTGAAAAATTAACTGAAGGTCCACAGGTGGTATGTACGGGTTAGAATGTGAcccggagagacagagagaggcattGGGTGGAGTAATATTGGACCTGAGGAGGGTCACATGATGGGCTATGTAATAAATCAACAACCAATCCCCTTTTAGAGCCATAGCATTTTCTCTCTGTATGTAGCATTGCGCCCAAACCAACTGGACCACCCCTTTAAACTGGACTCGTGTTGGAAACTCCTCGGAGAAAACTGTTCTCTTGCATGTTTACAAAACGGCTCTGTACATTTTTTGATCTATGTTCTATTTTCCATATATGAGAGGTTCCGTTTTTATTCCAAAGAGAAATGTGTATGATGTTGTACACCGAACATTTTAAGAATAAAGTCATATTTGTGCAACAAAAA

Function

NR:

description
protein FAM110C-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021595258.2 True 4265 mRNA 0.51 2 27769884 27787480

Neighbor

gene id symbol gene type direction distance location
ago1 LOC106582818 coding downstream 86967 27659143 ~ 27682917 (-)
LOC110516971 LOC106582842 coding downstream 111026 27611085 ~ 27658858 (-)
LOC118944661 NA coding downstream 160284 27593069 ~ 27609600 (-)
LOC110516872 LOC106582751 coding downstream 205428 27554029 ~ 27564456 (-)
LOC110516862 LOC106582717 coding downstream 220541 27542564 ~ 27549343 (-)
LOC110517114 pnrc2 coding upstream 488287 28275767 ~ 28280077 (-)
LOC110517198 LOC106582967 coding upstream 556264 28343744 ~ 28353662 (-)
LOC110517222 NA coding upstream 932060 28719454 ~ 28725294 (-)
LOC110517244 LOC106582991 coding upstream 994116 28781383 ~ 28786278 (-)
rspo1 LOC106605132 coding upstream 1103940 28891420 ~ 28921524 (-)
G241438 NA non-coding downstream 18815 27750725 ~ 27751069 (-)
G241385 NA non-coding downstream 37825 27654965 ~ 27732059 (-)
G241331 NA non-coding downstream 67724 27698442 ~ 27702160 (-)
G241379 NA non-coding downstream 126562 27643103 ~ 27643322 (-)
G241376 NA non-coding downstream 133123 27636540 ~ 27636761 (-)
G241774 NA non-coding upstream 40895 27828375 ~ 27828725 (-)
G241776 NA non-coding upstream 42024 27829504 ~ 27829784 (-)
G241778 NA non-coding upstream 44022 27831502 ~ 27831824 (-)
G241809 NA non-coding upstream 82119 27869599 ~ 27874132 (-)
G241860 NA non-coding upstream 146998 27934478 ~ 27935032 (-)
G240906 NA other downstream 584779 27184660 ~ 27185105 (-)
LOC110516678 LOC106605187 other downstream 611220 27154680 ~ 27159987 (-)
LOC110516667 LOC106582624 other downstream 657262 27111084 ~ 27127488 (-)
LOC110516631 LOC106582601 other downstream 684824 27070914 ~ 27097259 (-)
G240464 NA other downstream 1094851 26674592 ~ 26675033 (-)
G242021 LOC106582922 other upstream 467677 28205275 ~ 28256509 (-)
G242539 LOC106582989 other upstream 939490 28726970 ~ 28730375 (-)

Expression


Co-expression Network