LOC110517041 (LOC106582907)


Basic Information

Item Value
gene id LOC110517041
gene name LOC106582907
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 28152414 ~ 28163374 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021595273.2
TGTGGGAGGGAGGTTGAGCATAGGGAGACAAAAACAGGAACAAAGTTGATAAGACGGTTCCAAAGTTCACCTGCAGCTCACCTGGGGATGGGTGCTCCTTTCCCTAAACTGGTCAGAGAAGGTTCAGGTCGTGGATAGGATATCCTATGAATCCCAGATCTGCTCTCCGATACCCGGTGGATTGGGACTTGGTCTCTCCTTGTGTCTTCATTGATTTTTTTGGCCTGGACCAttactgttttttttgttgttgactggAGTCGTATTTACTACACATCACATGGTGGGTTCTCCCTGAGGAAATCAGGAGAAAGGAGTACAGACTGTGAGAACGGAATTTTAATCTCACTCTTCTGACTCCTCAAGCCCAATGGATCTGTGGCCTAGGAAGGTCGTGGTGCTTCTCCTGTACTGCCATGGTTGTTCCGCCATTGGTGAAGGGAAGCCATACTTCATCTCTAGGAATTTCAACACTGTGCTCCACTGGAACAAGGTCGACAGCCCAGATGAAGGGGTCCTTTACAGTGTCCATTACAAAAGATACGGAGAGCCATACCAGCTGAATATGGCGTGCCAGAACATCACAACTCTTTCTTGTGACCTCACTGCAGAGACACCATACATCTATCAACATGTATACTGTGCTCAGGTTTTCGCCAACAGTCACTCGCTAGGCCATACAGCACTGTTTAAACCTCTGAGAGACACTGTCCTTGGGCCAGCCAATGTGTCTGTGACACCCACAACGTCATCTTTAAAAGTGACTGTCACCCTACCGTTAGGACCGGATAATAAGACTTCCATTGAGAAGATTTTCAACAGTACCGGCTTTTCCTACCATGACCCTCCAACCTTCTATACCCTCAACATCACTCGTCCTAGCTGGGCAGCACAGGTCCACAAAAACACAAATGGAGAGTTTGTCCTCAACAATCTAAAGAACATCAACGTAGAGTACTGTGGCTATGTAGTGTACATCCCAACTAGAGAAATACACCGAAATCCCAGTGAGAGCCATACATTCTGTGTGGCATTACCAGGTGACCCCTGGCTGCTGTTCCCCTGGTTCCTCCTCTTAGGGTGTCTGCTACTTGGTTCTCTCCTGCTACCGGTGGTGGTGTGTCGTCACTATGTGAGAAAGAAGAGTAACATGCCAGACGCCTTGAAACTGACAACAAGCAACATCCCACCTCCATCGTGGTACCCTCCAGAAGCCATCACTATCTCCACTGCCAAGCCGTATCATTACCCTGTGGGGTTCTCCTATGGTAACCTGAAGACTGGTAAACTCCAGATGGGGTCAAAGTTCACCAGCAGTGGGTCTGGGTCCTATTCCCCCCAGGACAGACCCTCCTCCATTGCCCAGCCCAGGCACTGTGACACCTGCATGGGCCAGCAGGGTCCACCCCCAGAGTACTCCAACAACAGCACCCAGTCCTCCATCAACTATAGCATGGTCGTAGTGCAGGTATCCAATGAAGGTGTGAAGGAAGAATgccatcaccatccagacagcaAAGACAACATCAACTCTCCATGGTCATCTGAATCCAGTGACCACAAACCCAGTTGGGTTCAAGGTGGTCCAGTTTTGTTTTCGTGTGGAGCACCACCTGAGCCGAACCAGTGTGTTGGAGACAGGGACTCAACAGGGCACCCCCTGGTACTGCCCACATTGCGGCATATTGATAACCAACTGCCACTCTGTCCACTCTGCTGCTCCAGCCAGAGACAGAGTGCCATGGCCAGCATGGCACTGCCTACAGACACTAAGGGGCAGCTCCTTTTGTGGGACCTAGACAACACTGGGCAAGGGGCATCACTATTGTCTGATCTGGTCACCACGGGGGAGACAGAGTGGTTGGGCCCTggtacagggagagaggaggagagaacaaTATACACCCCGATCTCTCCAATGTGTTTCAATAACTCCAATGACTCACCATCTCACTCCATACCTCCCATCAACCTTGCAGACTGCGATACCTCATCAATGACATTCTTGTCTGGTTACAAACAACACTGGGTACCCCTTGCCCCTCAAGGTCTAACAGCAGAGGATAACTTTGTGATTTCCTCATATGCTCCACAACAGACTTGGATTGatcaggaagaagaggaagaaggagaggaagggggggatGAAAGAGGCAGTGAATTCTTTCTGGGAGGTTGGGTGGTACAAATTCTAGGATGATTGGTTTTCGTTTTTTAGATCCCTAAAATAATCTTAAGGGCCTCTGTGCCTGTTCTTCGCTCTGTTTGTGTCTCCAATGTACGCCAGAGACAAGTTCCGTCTCAGCGAGCCTTCACAAAGTGCAGAGAGAAGAtggaaggagcagagagagggtttTGGTGGCAGTGCAGAGTGGGGCTTTCACGGGTCCCTCTCCTGCCTGCCATGGAGCTTATGATTCAGAAACAAGAGCAGTACTCCAGTATCCAGGACACATGCCCCCCTCAATGGAATCCTACTGAATTAATGCTAGAATTTTGGCCCTTTTTTACATTATGACAAATGTTGGATGTAGGATCAAGTGCTGTAAAATGTAGGATCAAGAATATAGGATAAAATGCTGTAAAATAGATTCTGTACATTTGATTGTGACGCTCTCTTTCATTTGCATGTTTTGCAACATTTCCAGAAATAGGCTAGTTACACTAACATGTTCATTTAAACCATGACTGTGAAGTTTCTGTATCATTTGAAGAAATTCAATTTACATCCAGGGTTGAATCTGGGTGGCATAAGGTAGTAAACAGCCTGTCCTCTTGTGTCATAATGCCATAGGCACAAAGCTTTCATTTCAGCATATCTGTACTTTTGTCTCTTTCATTTATTGTTTCTCGTTTGTCATATTATCTGTGTTATCGTGCTCCACATTATATGCATCACAatgctggagaaaaaaaaaatgtatcgcAAACAATTGAAATTCATATTAGCATTGAAGGTGATGCATACATTTCTAAAATAGTATTGtcagaaatacaaaacatggCAGCATGAGTTACCCAAGAAACGTGTCAAATAACtttgttgtgtgttttttgtcTTCAGAGTACGTGACCTCAATAACGTCCTGTCATTGTTTGTTGCTCTTTTGAGGTGATGAAACTACAGTACGGGAGACAAACGGCTTGGGTAATAAGCTGTTAAAACTGTCAGGTGTGATGTGTATCACATATTCAGcatatatgtacagtataatactgATTGGTTTTTATATGGGTCACTTTTATAACTAATATGACTGTGAATTTAATGTTTTCATTAAAAAGGTAACTA

Function

NR:

description
uncharacterized protein LOC110517041

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021595273.2 True 3292 mRNA 0.46 7 28152414 28163374

Neighbor

gene id symbol gene type direction distance location
LOC110504004 LOC106582899 coding upstream 60978 27888236 ~ 28091436 (+)
slc9a1a LOC106605147 coding upstream 278277 27826200 ~ 27874137 (+)
LOC110516993 LOC106605183 coding upstream 402446 27725189 ~ 27749972 (+)
LOC110516984 NA coding upstream 428620 27705985 ~ 27723794 (+)
dhdds dhdds coding upstream 455784 27683075 ~ 27696630 (+)
myom3 LOC106582914 coding downstream 12466 28175840 ~ 28254021 (+)
LOC110517089 LOC106582922 coding downstream 91777 28255151 ~ 28256509 (+)
LOC110517101 srr35 coding downstream 102217 28265591 ~ 28269842 (+)
LOC110517126 LOC106582934 coding downstream 123364 28286738 ~ 28295817 (+)
akirin1 LOC100499583 coding downstream 140816 28304190 ~ 28321319 (+)
G241637 NA non-coding upstream 20107 28130891 ~ 28132307 (+)
G241564 NA non-coding upstream 127776 28010311 ~ 28024638 (+)
G241532 NA non-coding upstream 216483 27935256 ~ 27935931 (+)
G241516 NA non-coding upstream 229092 27893835 ~ 27923322 (+)
G241747 NA non-coding downstream 207513 28370887 ~ 28371228 (+)
G241749 NA non-coding downstream 210469 28373843 ~ 28374141 (+)
G241750 NA non-coding downstream 210903 28374277 ~ 28374624 (+)
G241751 NA non-coding downstream 211369 28374743 ~ 28375028 (+)
G241150 LOC106582751 other upstream 593882 27556172 ~ 27558532 (+)
LOC110516767 LOC106605158 other upstream 888021 27240708 ~ 27264405 (+)
G240244 NA other upstream 1100460 27051186 ~ 27051954 (+)
LOC110517275 LOC106583018 other downstream 868337 28995823 ~ 29034924 (+)
G243679 LOC107756720 other downstream 1505005 29668379 ~ 29690796 (+)
G244292 LOC106583212 other downstream 1969025 30132399 ~ 30137564 (+)
G244691 NA other downstream 2468396 30631770 ~ 30632533 (+)
G244851 cep85 other downstream 2702192 30865566 ~ 30874608 (+)

Expression


Co-expression Network