LOC110517114 (pnrc2)


Basic Information

Item Value
gene id LOC110517114
gene name pnrc2
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 28275767 ~ 28280077 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021595321.2
ACCCCAGCTTCCATTTTGTTGCAAATCAGACAGTCGAGAGGGAATAGAGATATACACACATTTCTAGATATAGAAATTTCTACATTCAGAGAGttcagacgtcaattcaacaatctctgacaaagggTTTTTACCAACTAAGCCTGAGGAAGTCGATCGGCTTTGAGCATATTCGTGCGCTGAAGTGAATTGATGTTCTACTCGGCTTCACGGGAAAACGACGCTCATTGGCACATGACAACTCCAGATCTTGCTGGACCTAAAAGTGCAGCGAGAAGTAGACCGAAGACTATTTCGAGGACCTGGAGCCCAATTGGAAAGGAGAAATTAAGAAGGAAGCATCTCTGCACATTCAACTTTCTAATAACAAAGAGGTGACACATAGTCTAGGAAGTACAGtatgggaggtggagagaggtacaACATTCCAGTGTCCCACCCAGAGCGCCCATTGCCCAAGAAGAACCATCAGCTGGGCCGGGCCAAGCAGAGAGTTGTCCGCGATCAGAATGGAGTGACAACCGTAGCATCCTCGGGGGCGGCGCGAGGTCCTCACCAACATGGCCACCGCAAGGGCGCAGCCTACCCCTGGTTCCCAGAGGCGCGGCTGGCCGCGTCGGCTGAGAAGATAAACACTTCTGTCCGTTTTGCCAACGCCTACGATCAGAATTGGGAGGGCGCTGTGTCCCACCTGAACACACTTCTGGCCGCCCAGTGTGGCGGCCCGAGCTATGCAGGGGCCAAGTTCAGCGAGCCACCCTCCCCCAGTGTGCTGCCCAAGCCCCCCAGCCACTGGGTCCCCATGGGTATGCGTGACAGCAGGGAGATGATGGCCTTCCAGCTGAAGAGCCTCCTCAAGGTGCATGCCTAGAGATGGACTCTCATAACCTGACCTTTCAAAGCCAACGTGTGAACGAAGGCTCCTGCCTGCCTTGAACGCCCCAGCGCTGTAATATACTTTTGGCTATTTTAGGTTGAGGTGTTCGAAgggtggtaggcatgttgtaggGATGTCTCTGCAGCTGTTTGTCacccttttttctctcttttttgaGAAACACAGGTATTACAGCGCTGCAGCCTTGTTGGTGGGGGAGAATGCTCTCATTGGAGTCTGTTTCTGTCACTAACGATGAACTGGATATCATTCGTATTTGTgctctgttttgttgttttttttgttggccGTTATAGCAAGTCTGTGGGCTTTTCTTCCCAAACGGTAAGGTTGGATACAGTTAGTAATAACATGTTAATGCAGTCTCATTTACAGTCCATTTTTGTGGACCGGTAATTCTTTGGCACGTTAAGTTCTGTTAATCATTAAGGATTTCACCTCTGACAACCTGGTGCTACCTGAAGCACAATCTACAATAGTAGCATTTTCTTTCGTTTGACTTactgttttccctctggtttgggaggggggggggggtgtaaaaatCCACTGTTCTGCAGGGAAACCAGAGCTATCTTTCAGGAGGGAATCCGCTGTAGTAGTGAGTACAGGTCACAAGTATAACCTCAAACTGAAGTGTAGAGGCCATGGCACACAGGCCTTGGACGTTCAACTCCTGTACTTTTTTATTGCGCTGTGCGCTCTGCACTATGGCAGTTGTTCTGGTCCAAGGCCTGCAGCTCTATCATACAATTATTTTGTCTATTTGTGATGTGGTTATTAATCAATGAGTCAGTTTTGTCTTAACCAAACGAATGTCTTTTGCTGTcatttttttcaccatctctcccTTGTATGTCTGACGTGGTTACCAGTGCCATATCAACCACGTTGGCTTGCGTGGCACAGAGAATTTGGTCCTCTGGGTCACTTTTTTTCCCCCAACGCAATCAGTACTGCTATTAGCCACTTTCAAACTATCTCGTTCCCTACCGAAACCCCACACAGTAAACAATGCAGAGGCGGGCCAGATTCAACAGGAACGTGGAACTAAGTTTCACAACCTCAATCTCCTGTGCCATGGCCCTGTTTGCTGTGTGGCAGTTTCTTACGAGGAAGTGCAACGTTGAGAGACGTGCGTGGCACAGAGGACGTTCGGCGCAAGGCCCGTGTGGATCTGTTTACATTTAAAGTCTCCAGCAGCAATCTCCAGATACTCACTGCTTTTGGCACCCTACTCTTCTTGCACTGCAATCAATAATTTTTTTATCTCCCTCTAGGTTCTAATTTCAAGGGAGGCAGTCTTTTCTTTTCTTTGCAGAATGGGAACTGTAATGGCCATCTTAGAGACGACAAAACGGAGCTCACAAGCTTGAAATAAGTTAAAGAAAAAGAGCCATGTAAATAATGAAATGTGTAAAAAATACTTGCAGCATATGTACATTTAGCAGTGTGTTTTTAAACCTGCTTGATAAAGTATTTTTAGTAATAACACTGAATGTATAAGTCATGCTAAGGACATGTCTTGACTTCAAATACGGAATATTTTTGTAAAAAAGAATCTGCCTATAGCATTTGTCAATACCCCTTCACTGTGTAATGTCTAATCTTGCacatgttttttattatttttattatgcACAGTGGATGGCAAAAAAATGCATTGTGCAAAAGAAACTTGGCTTACATTTGACCCTTTGAGGAGACTTGGATATGTATGAATTGTTATATTATTTTAGTTTCCAGGTGTGCTACAGCCTGAAGACAGCTGCTGGGGACTGGTTTCCCAGACAGATTGACCCCAAACCTGGAttaaaacaactatttcaatGGATAGTCTCCATTTGAATGTTGTTTTTTCAGGACTACTTATGATCTGTCTGGAAAACGTGCCCTGAATTGAGTTGTTCTACTTGATTGTGCCTACATTTTAACCCAACATTACAAAATTATGTTGTTGATCGACATTGATTGATATTTTGTGATTAGGTAATGTGATTCATTGaccaaaaaatgttttatctaAAAACCACCTTCAGTTATCTGCTGTTCTTCTGCCAGAAGATAATTGAATTTGGCCCTATGTTATTGTCAACCTGGTTTCATCTGCctttgttttgttctgtgtgtttaaatgcattgtctttttttttttaagaacatGTGTTCTGTTGGTTTCTGTTAATGATTCATACATGTATAAGTCTTTGTCCTAAATTTGAAACTCAAGTGTTTCTCAACAAATTGGCTTTTAATTTGTCCCATTTTGTTTACTGTCACCAATGAATATGAAATTATGCCACATGTCCAGACTTGATTGAatttgacttaaaaaaaaaaaagaacccaAAGCACTGCTTTTATTGGTCTAATCAAAAAGTAAATCCCAAAAAATAAAATCCCTTCCCTTTCCCCCCTA
>TU276553
GTCGAGAGGGAATAGAGATATACACACATTTCTAGATATAGAAATTTCTACATTCAGAGAGttcagacgtcaattcaacaatctctgacaaagggTTTTTACCAACTAAGCCTGAGGAAGTCGATCGGCTTTGAGCATATTCGTGCGCTGAAGTGAATTGATGTTCTACTCGGCTTCACGGGAAAACGACGCTCATTGGCACATGACAACTCCAGATCTTGCTGGACCTAAAAGTGCAGCGAGAAGTAGACCGAAGACTATTTCGAGGACCTGGAGCCCAATTGGAAAGGAGAAATTAAGAAGGAAGCATCTCTGCACATTCAACTTTCTAATAACAAAGAGGTGACACATAGTCTAGGAAGTACAGtatgggaggtggagagaggtacaACATTCCAGTGTCCCACCCAGAGCGCCCATTGCCCAAGAAGAACCATCAGCTGGGCCGGGCCAAGCAGAGAGTTGTCCGCGATCAGAATGGAGTGACAACCGTAGCATCCTCGGGGGCGGCGCGAGGTCCTCACCAACATGGCCACCGCAAGGGCGCAGCCTACCCCTGGTTCCCAGAGGCGCGGCTGGCCGCGTCGGCTGAGAAGATAAACACTTCTGTCCGTTTTGCCAACGCCTACGATCAGAATTGGGAGGGCGCTGTGTCCCACCTGAACACACTTCTGGCCGCCCAGTGTGGCGGCCCGAGCTATGCAGGGGCCAAGTTCAGCGAGCCACCCTCCCCCAGTGTGCTGCCCAAGCCCCCCAGCCACTGGGTCCCCATGGGTATGCGTGACAGCAGGGAGATGATGGCCTTCCAGCTGAAGAGCCTCCTCAAGGTGCATGCCTAGAGATGGACTCTCATAACCTGACCTTTCAAAGCCAACGTGTGAACGAAGGCTCCTGCCTGCCTTGAACGCCCCAGCGCTGTAATATACTTTTGGCTATTTTAGGTTGAGGTGTTCGAAgggtggtaggcatgttgtaggGATGTCTCTGCAGCTGTTTGTCacccttttttctctcttttttgaGAAACACAGGTATTACAGCGCTGCAGCCTTGTTGGTGGGGGAGAATGCTCTCATTGGAGTCTGTTTCTGTCACTAACGATGAACTGGATATCATTCGTATTTGTgctctgttttgttgttttttttgttggccGTTATAGCAAGTCTGTGGGCTTTTCTTCCCAAACGGTAAGGTTGGATACAGTTAGTAATAACATGTTAATGCAGTCTCATTTACAGTCCATTTTTGTGGACCGGTAATTCTTTGGCACGTTAAGTTCTGTTAATCATTAAGGATTTCACCTCTGACAACCTGGTGCTACCTGAAGCACAATCTACAATAGTAGCATTTTCTTTCGTTTGACTTactgttttccctctggtttgggaggggggggggggtgtaaaaatCCACTGTTCTGCAGGGAAACCAGAGCTATCTTTCAGGAGGGAATCCGCTGTAGTAGTGAGTACAGGTCACAAGTATAACCTCAAACTGAAGTGTAGAGGCCATGGCACACAGGCCTTGGACGTTCAACTCCTGTACTTTTTTATTGCGCTGTGCGCTCTGCACTATGGCAGTTGTTCTGGTCCAAGGCCTGCAGCTCTATCATACAATTATTTTGTCTATTTGTGATGTGGTTATTAATCAATGAGTCAGTTTTGTCTTAACCAAACGAATGTCTTTTGCTGTcatttttttcaccatctctcccTTGTATGTCTGACGTGGTTACCAGTGCCATATCAACCACGTTGGCTTGCGTGGCACAGAGAATTTGGTCCTCTGGGTCACTTTTTTTCCCCCAACGCAATCAGTACTGCTATTAGCCACTTTCAAACTATCTCGTTCCCTACCGAAACCCCACACAGTAAACAATGCAGAGGCGGGCCAGATTCAACAGGAACGTGGAACTAAGTTTCACAACCTCAATCTCCTGTGCCATGGCCCTGTTTGCTGTGTGGCAGTTTCTTACGAGGAAGTGCAACGTTGAGAGACGTGCGTGGCACAGAGGACGTTCGGCGCAAGGCCCGTGTGGATCTGTTTACATTTAAAGTCTCCAGCAGCAATCTCCAGATACTCACTGCTTTTGGCACCCTACTCTTCTTGCACTGCAATCAATAATTTTTTTATCTCCCTCTAGGTTCTAATTTCAAGGGAGGCAGTCTTTTCTTTTCTTTGCAGAATGGGAACTGTAATGGCCATCTTAGAGACGACAAAACGGAGCTCACAAGCTTGAAATAAGTTAAAGAAAAAGAGCCATGTAAATAATGAAATGTGTAAAAAATACTTGCAGCATATGTACATTTAGCAGTGTGTTTTTAAACCTGCTTGATAAAGTATTTTTAGTAATAACACTGAATGTATAAGTCATGCTAAGGACATGTCTTGACTTCAAATACGGAATATTTTTGTAAAAAAGAATCTGCCTATAGCATTTGTCAATACCCCTTCACTGTGTAATGTCTAATCTTGCacatgttttttattatttttattatgcACAGTGGATGGCAAAAAAATGCATTGTGCAAAAGAAACTTGGCTTACATTTGACCCTTTGAGGAGACTTGGATATGTATGAATTGTTATATTATTTTAGTTTCCAGGTGTGCTACAGCCTGAAGACAGCTGCTGGGGACTGGTTTCCCAGACAGATTGACCCCAAACCTGGAttaaaacaactatttcaatGGATAGTCTCCATTTGAATGTTGTTTTTTCAGGACTACTTATGATCTGTCTGGAAAACGTGCCCTGAATTGAGTTGTTCTACTTGATTGTGCCTACATTTTAACCCAACATTACAAAATTATGTTGTTGATCGACATTGATTGATATTTTGTGATTAGGTAATGTGATTCATTGaccaaaaaatgttttatctaAAAACCACCTTCAGTTATCTGCTGTTCTTCTGCCAGAAGATAATTGAATTTGGCCCTATGTTATTGTCAACCTGGTTTCATCTGCctttgttttgttctgtgtgtttaaatgcattgtctttttttttttaagaacatGTGTTCTGTTGGTTTCTGTTAATGATTCATACATGTATAAGTCTTTGTCCTAAATTTGAAACTCAAGTGTTTCTCAACAAATTGGCTTTTAATTTGTCCCATTTTGTTTACTGTCACCAATGAATATGAAATTATGCCACATGTCCAGACTTGATTGAatttgacttaaaaaaaaaaaagaacccaAAGCACTGCTTTTATTGGTCTAATCAAAAAGTAAATCCCAAAAAATAAAATCCCTTCCCTTTCCC

Function

symbol description
pnrc2 Acts upstream of or within nuclear-transcribed mRNA catabolic process. Predicted to be located in cytoplasm. Predicted to be active in P-body and nucleus. Is expressed in nervous system; otic vesicle; and trunk. Orthologous to human PNRC2 (proline rich nuclear receptor coactivator 2).

NR:

description
proline-rich nuclear receptor coactivator 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021595321.2 False 3317 mRNA 0.43 3 28275767 28280077
TU276553 True 3280 TUCP 0.43 3 28275772 28280045

Neighbor

gene id symbol gene type direction distance location
si:ch211-107n13.1 LOC106582885 coding downstream 488287 27769884 ~ 27787480 (-)
ago1 LOC106582818 coding downstream 592850 27659143 ~ 27682917 (-)
LOC110516971 LOC106582842 coding downstream 616909 27611085 ~ 27658858 (-)
LOC118944661 NA coding downstream 666167 27593069 ~ 27609600 (-)
LOC110516872 LOC106582751 coding downstream 711311 27554029 ~ 27564456 (-)
LOC110517198 LOC106582967 coding upstream 63667 28343744 ~ 28353662 (-)
LOC110517222 NA coding upstream 439463 28719454 ~ 28725294 (-)
LOC110517244 LOC106582991 coding upstream 501519 28781383 ~ 28786278 (-)
rspo1 LOC106605132 coding upstream 611343 28891420 ~ 28921524 (-)
dnali1 dnali1 coding upstream 754851 29034928 ~ 29039438 (-)
G242021 LOC106582922 non-coding downstream 19258 28205275 ~ 28256509 (-)
G242083 LOC106605000 non-coding downstream 21751 28251000 ~ 28254016 (-)
G242045 NA non-coding downstream 67088 28207295 ~ 28208679 (-)
G242043 NA non-coding downstream 70925 28204634 ~ 28204842 (-)
G241970 NA non-coding downstream 81958 28104707 ~ 28193809 (-)
G242092 NA non-coding upstream 17227 28297304 ~ 28306937 (-)
G242076 NA non-coding upstream 30778 28310855 ~ 28333370 (-)
G242121 NA non-coding upstream 57306 28337383 ~ 28340093 (-)
G242126 NA non-coding upstream 89067 28369144 ~ 28369386 (-)
G242127 NA non-coding upstream 90893 28370970 ~ 28371221 (-)
G240906 NA other downstream 1090662 27184660 ~ 27185105 (-)
LOC110516678 LOC106605187 other downstream 1117103 27154680 ~ 27159987 (-)
LOC110516667 LOC106582624 other downstream 1163145 27111084 ~ 27127488 (-)
LOC110516631 LOC106582601 other downstream 1190707 27070914 ~ 27097259 (-)
G242539 LOC106582989 other upstream 446893 28726970 ~ 28730375 (-)
G242796 NA other upstream 665664 28945741 ~ 28946292 (-)
G243154 NA other upstream 852239 29132316 ~ 29152629 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location