rhbdl2 (LOC106605138)


Basic Information

Item Value
gene id rhbdl2
gene name LOC106605138
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 28322929 ~ 28334880 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021595363.2
ttaaataagggtattttatatatatatatatatatatatatatataaatggggACCTCCAGCCAAAGCCCATGACGACATCACCTATATCAGGTGTTACCGGAAGCGCAGGCTACAATCTGAGGAGTGATGGACAGAGACATTGAAGAGCAGGACCCCCTCGCCGTAGACCCTGTTGACCGAGATGGGAGACGGATGGGGGATACGGGAGGTGATGATGACGGGAATAGGAAGGTTGGATGCTGTGAGAGGTTCCATCGCTCCATCTCCAAGTGGATGCTTCCGGAAGAACTCCACGAACAGTACCTGGAGCGAGCCAACTGCTGCCCCCCTCCCATCTTCATCATCCTCATCAGCATCGGAGAGTTAGCAGTGTTTATCTACTATGCGGTGTGGAAGCCCCAGAAGCAGTGGGTCACCCTGGGCGAGGGCATCTGGAACAGCCCTCTCTCCTACAAGTCTGACCGGCGGGAGGAGGCGTGGCGCTTTGTCTCCTACATGTTTGTCCACGCTGGCGTGGAGCACATCCTGGGCAACCTGGTGATGCAGCTACTGCTGGGCATCCCGCTGGAGCTGGTCCACAAAGGCTTTGAAGTGGGCATGGTCTACATGGCAGGCGTCCTAGCAGGCTCCCTGGCCAGCTCCATATTTGATCCTCTCAGTGCTCTGGTAGGGGCCTCTGGGGGGGTATATGCCCTCATAGGGGGATACTTCATGAATGCTGTTGTGAACTTCAGAGAGATGATTCCTGTCCTTGGAGTGTTTCGTATTGGAGTGATTGTAATTATTGTCGGGACAGATGTCGGATTCGCCCTTTACAGAAGATTTCTAACTCACGACGTTGGCTTGAAGGTCTCGTTTGTGGCGCACATCGGAGGAGGGGTGGCTGGGATGACCATTGGCTACGTGTTCTTCAGCGCCTACAACCAGAAGCTCCTGAAGGACCCGCGTTTCTGGCTCTGCATAGTCGGCTATGTAGTCTTCCTCTTGTTCGCTGTGCTCTTCAACATCTTCCTTTCCCCTGCATAATTCCACACTACACGAATGAATGCGTTTTGAATAACGGAAATAGGGCATTTCAGGGACTTGGAAGGTTATCCAAAAAATGTAAATCTCTACTGCAGGAGAGAAGAGATTTAAATGGAAAGAGGGACGCCCTGTTGCTGAAGTGTAGTATTACACACAGCACAAATTCTCTTTGTTACATGTTTATTTTAGTGATGTTGATAATGATCTGAACTCAATATATCTGTTTGTTGGTGTTACAGGTCTTTTTTTTTCATGATGTTTGTCCTGATTGGTCAGTGAGGTAGGACATTATTTCCCCAAGCAGGTCCTTTCCTCCAAGTTTTAGATTGGCCTACAAGTGAGTATTTTCAAGCCATCAGGAGCAGTGTAACATCTGTTGGTGACTGGAGTGTCAATTCATAAACAAGCCATGACAATGGCCCAATGCCAGGTTATTGTTTCACTTCCCTGTTGACAGGATGAGACGCTGTCTGCCAATAGTACATATCAATGTAAATCTGCTCACACATCCTTGGCTAAGCCTCTTTCAATGATAATTTATTGAACAcatatttttaatttgttttccTCTTTCCTCTTCTACTTGCCAGCAGTTTGTAATTTGTCTGTTAGTCCTTTGGGTGTTTTAGGATGTTTGTGTACAGTGGAACAGTAGAGGGCAGCACTTTCCATTGTATATTAGGCATTTTCTATATCATTTCAATTGTACCAGTGTGTATTAGTCTACATAATCTTTTTAGTAAAATGAAAAGGCCTCAATTTAAGGCCATCTGGGTGGCACATTTTTATTGAAGATATCTTCAAATGTTTCTCCTAAACTTATTTGTGGTGATATTTGTTAGTTGGTATCTGAAACCAAATGGTggttaaaaaaaacaatacatactTTAGGTATTTATGTAATTACAACTTTACCATGTACTTTCCAAGTAAATCTTAGGTAGATAGCATAACATTCCAAATGTAAATTACTTGTTTTTTATTTGAAGCTTTTTTTTtctgctttttaaaaaaaaaatcaccagaCTTGATACTGTATCTTCATCACTTttacattaaataaatattttacatacatttc
>XM_021595346.2
GGTAAGTTGTTGCAAAATGCCTGCCAAGTTTGCGCTACATTCAATTTTTTAGATTTGCTTTTCAAGTAGTGCCGCTTCAGAGGTTTGCTTGGAAAAAGGAAGTTCCGCTGCAGGAAAAGCTAAGCCAGGCTACAATCTGAGGAGTGATGGACAGAGACATTGAAGAGCAGGACCCCCTCGCCGTAGACCCTGTTGACCGAGATGGGAGACGGATGGGGGATACGGGAGGTGATGATGACGGGAATAGGAAGGTTGGATGCTGTGAGAGGTTCCATCGCTCCATCTCCAAGTGGATGCTTCCGGAAGAACTCCACGAACAGTACCTGGAGCGAGCCAACTGCTGCCCCCCTCCCATCTTCATCATCCTCATCAGCATCGGAGAGTTAGCAGTGTTTATCTACTATGCGGTGTGGAAGCCCCAGAAGCAGTGGGTCACCCTGGGCGAGGGCATCTGGAACAGCCCTCTCTCCTACAAGTCTGACCGGCGGGAGGAGGCGTGGCGCTTTGTCTCCTACATGTTTGTCCACGCTGGCGTGGAGCACATCCTGGGCAACCTGGTGATGCAGCTACTGCTGGGCATCCCGCTGGAGCTGGTCCACAAAGGCTTTGAAGTGGGCATGGTCTACATGGCAGGCGTCCTAGCAGGCTCCCTGGCCAGCTCCATATTTGATCCTCTCAGTGCTCTGGTAGGGGCCTCTGGGGGGGTATATGCCCTCATAGGGGGATACTTCATGAATGCTGTTGTGAACTTCAGAGAGATGATTCCTGTCCTTGGAGTGTTTCGTATTGGAGTGATTGTAATTATTGTCGGGACAGATGTCGGATTCGCCCTTTACAGAAGATTTCTAACTCACGACGTTGGCTTGAAGGTCTCGTTTGTGGCGCACATCGGAGGAGGGGTGGCTGGGATGACCATTGGCTACGTGTTCTTCAGCGCCTACAACCAGAAGCTCCTGAAGGACCCGCGTTTCTGGCTCTGCATAGTCGGCTATGTAGTCTTCCTCTTGTTCGCTGTGCTCTTCAACATCTTCCTTTCCCCTGCATAATTCCACACTACACGAATGAATGCGTTTTGAATAACGGAAATAGGGCATTTCAGGGACTTGGAAGGTTATCCAAAAAATGTAAATCTCTACTGCAGGAGAGAAGAGATTTAAATGGAAAGAGGGACGCCCTGTTGCTGAAGTGTAGTATTACACACAGCACAAATTCTCTTTGTTACATGTTTATTTTAGTGATGTTGATAATGATCTGAACTCAATATATCTGTTTGTTGGTGTTACAGGTCTTTTTTTTTCATGATGTTTGTCCTGATTGGTCAGTGAGGTAGGACATTATTTCCCCAAGCAGGTCCTTTCCTCCAAGTTTTAGATTGGCCTACAAGTGAGTATTTTCAAGCCATCAGGAGCAGTGTAACATCTGTTGGTGACTGGAGTGTCAATTCATAAACAAGCCATGACAATGGCCCAATGCCAGGTTATTGTTTCACTTCCCTGTTGACAGGATGAGACGCTGTCTGCCAATAGTACATATCAATGTAAATCTGCTCACACATCCTTGGCTAAGCCTCTTTCAATGATAATTTATTGAACAcatatttttaatttgttttccTCTTTCCTCTTCTACTTGCCAGCAGTTTGTAATTTGTCTGTTAGTCCTTTGGGTGTTTTAGGATGTTTGTGTACAGTGGAACAGTAGAGGGCAGCACTTTCCATTGTATATTAGGCATTTTCTATATCATTTCAATTGTACCAGTGTGTATTAGTCTACATAATCTTTTTAGTAAAATGAAAAGGCCTCAATTTAAGGCCATCTGGGTGGCACATTTTTATTGAAGATATCTTCAAATGTTTCTCCTAAACTTATTTGTGGTGATATTTGTTAGTTGGTATCTGAAACCAAATGGTggttaaaaaaaacaatacatactTTAGGTATTTATGTAATTACAACTTTACCATGTACTTTCCAAGTAAATCTTAGGTAGATAGCATAACATTCCAAATGTAAATTACTTGTTTTTTATTTGAAGCTTTTTTTTtctgctttttaaaaaaaaaatcaccagaCTTGATACTGTATCTTCATCACTTttacattaaataaatattttacatacatttc
>XM_021595352.2
TGTTGCAAAATGCCTGCCAAGTTTGCGCTACATTCAATTTTTTAGATTTGCTTTTCAAGTAGTGCCGCTTCAGAGGTTTGCTTGGAAAAAGGAAGTTCCGCTGCAGGAAAAGCTAAGCCAGGTCTATAATTATCTCAAGTCATTTATCAGAATAGACCGTCATTTTCCCAAATGTGCAGTTGTGAGGATTTTACACGCCTTGGAATGTCCGGACTGTTTTAGAATTGCgtgaaaatataaaaacaaaagtATTTGAGAACTTCCACAATTTATGTATTTTAAGATGCTAGTGGAAACGTTGAGTTGAATAATTTTTCACGGCAGCGCTTTCAGTCCGTACGCTACAATCTGAGGAGTGATGGACAGAGACATTGAAGAGCAGGACCCCCTCGCCGTAGACCCTGTTGACCGAGATGGGAGACGGATGGGGGATACGGGAGGTGATGATGACGGGAATAGGAAGGTTGGATGCTGTGAGAGGTTCCATCGCTCCATCTCCAAGTGGATGCTTCCGGAAGAACTCCACGAACAGTACCTGGAGCGAGCCAACTGCTGCCCCCCTCCCATCTTCATCATCCTCATCAGCATCGGAGAGTTAGCAGTGTTTATCTACTATGCGGTGTGGAAGCCCCAGAAGCAGTGGGTCACCCTGGGCGAGGGCATCTGGAACAGCCCTCTCTCCTACAAGTCTGACCGGCGGGAGGAGGCGTGGCGCTTTGTCTCCTACATGTTTGTCCACGCTGGCGTGGAGCACATCCTGGGCAACCTGGTGATGCAGCTACTGCTGGGCATCCCGCTGGAGCTGGTCCACAAAGGCTTTGAAGTGGGCATGGTCTACATGGCAGGCGTCCTAGCAGGCTCCCTGGCCAGCTCCATATTTGATCCTCTCAGTGCTCTGGTAGGGGCCTCTGGGGGGGTATATGCCCTCATAGGGGGATACTTCATGAATGCTGTTGTGAACTTCAGAGAGATGATTCCTGTCCTTGGAGTGTTTCGTATTGGAGTGATTGTAATTATTGTCGGGACAGATGTCGGATTCGCCCTTTACAGAAGATTTCTAACTCACGACGTTGGCTTGAAGGTCTCGTTTGTGGCGCACATCGGAGGAGGGGTGGCTGGGATGACCATTGGCTACGTGTTCTTCAGCGCCTACAACCAGAAGCTCCTGAAGGACCCGCGTTTCTGGCTCTGCATAGTCGGCTATGTAGTCTTCCTCTTGTTCGCTGTGCTCTTCAACATCTTCCTTTCCCCTGCATAATTCCACACTACACGAATGAATGCGTTTTGAATAACGGAAATAGGGCATTTCAGGGACTTGGAAGGTTATCCAAAAAATGTAAATCTCTACTGCAGGAGAGAAGAGATTTAAATGGAAAGAGGGACGCCCTGTTGCTGAAGTGTAGTATTACACACAGCACAAATTCTCTTTGTTACATGTTTATTTTAGTGATGTTGATAATGATCTGAACTCAATATATCTGTTTGTTGGTGTTACAGGTCTTTTTTTTTCATGATGTTTGTCCTGATTGGTCAGTGAGGTAGGACATTATTTCCCCAAGCAGGTCCTTTCCTCCAAGTTTTAGATTGGCCTACAAGTGAGTATTTTCAAGCCATCAGGAGCAGTGTAACATCTGTTGGTGACTGGAGTGTCAATTCATAAACAAGCCATGACAATGGCCCAATGCCAGGTTATTGTTTCACTTCCCTGTTGACAGGATGAGACGCTGTCTGCCAATAGTACATATCAATGTAAATCTGCTCACACATCCTTGGCTAAGCCTCTTTCAATGATAATTTATTGAACAcatatttttaatttgttttccTCTTTCCTCTTCTACTTGCCAGCAGTTTGTAATTTGTCTGTTAGTCCTTTGGGTGTTTTAGGATGTTTGTGTACAGTGGAACAGTAGAGGGCAGCACTTTCCATTGTATATTAGGCATTTTCTATATCATTTCAATTGTACCAGTGTGTATTAGTCTACATAATCTTTTTAGTAAAATGAAAAGGCCTCAATTTAAGGCCATCTGGGTGGCACATTTTTATTGAAGATATCTTCAAATGTTTCTCCTAAACTTATTTGTGGTGATATTTGTTAGTTGGTATCTGAAACCAAATGGTggttaaaaaaaacaatacatactTTAGGTATTTATGTAATTACAACTTTACCATGTACTTTCCAAGTAAATCTTAGGTAGATAGCATAACATTCCAAATGTAAATTACTTGTTTTTTATTTGAAGCTTTTTTTTtctgctttttaaaaaaaaaatcaccagaCTTGATACTGTATCTTCATCACTTttacattaaataaatattttacatacatttc
>XM_021595359.2
TGTTGCAAAATGCCTGCCAAGTTTGCGCTACATTCAATTTTTTAGATTTGCTTTTCAAGTAGTGCCGCTTCAGAGGTTTGCTTGGAAAAAGGAAGTTCCGCTGCAGGAAAAGCTAAGCCAGGTCTATAATTATCTCAAGTCATTTATCAGAATAGACCGTCATTTTCCCAAATGTGCAGTTGTGAGGATTTTACACGCCTTGGAATGTCCGGACTGTTTTAGAATTGCgtgaaaatataaaaacaaaagtATTTGAGAACTTCCACAATTTATGTATTTTAAGATGCTAGTGGAAACGTTGAGTTGAATAATTTTTCACGGCAGCGCTTTCAGTCCGCTACAATCTGAGGAGTGATGGACAGAGACATTGAAGAGCAGGACCCCCTCGCCGTAGACCCTGTTGACCGAGATGGGAGACGGATGGGGGATACGGGAGGTGATGATGACGGGAATAGGAAGGTTGGATGCTGTGAGAGGTTCCATCGCTCCATCTCCAAGTGGATGCTTCCGGAAGAACTCCACGAACAGTACCTGGAGCGAGCCAACTGCTGCCCCCCTCCCATCTTCATCATCCTCATCAGCATCGGAGAGTTAGCAGTGTTTATCTACTATGCGGTGTGGAAGCCCCAGAAGCAGTGGGTCACCCTGGGCGAGGGCATCTGGAACAGCCCTCTCTCCTACAAGTCTGACCGGCGGGAGGAGGCGTGGCGCTTTGTCTCCTACATGTTTGTCCACGCTGGCGTGGAGCACATCCTGGGCAACCTGGTGATGCAGCTACTGCTGGGCATCCCGCTGGAGCTGGTCCACAAAGGCTTTGAAGTGGGCATGGTCTACATGGCAGGCGTCCTAGCAGGCTCCCTGGCCAGCTCCATATTTGATCCTCTCAGTGCTCTGGTAGGGGCCTCTGGGGGGGTATATGCCCTCATAGGGGGATACTTCATGAATGCTGTTGTGAACTTCAGAGAGATGATTCCTGTCCTTGGAGTGTTTCGTATTGGAGTGATTGTAATTATTGTCGGGACAGATGTCGGATTCGCCCTTTACAGAAGATTTCTAACTCACGACGTTGGCTTGAAGGTCTCGTTTGTGGCGCACATCGGAGGAGGGGTGGCTGGGATGACCATTGGCTACGTGTTCTTCAGCGCCTACAACCAGAAGCTCCTGAAGGACCCGCGTTTCTGGCTCTGCATAGTCGGCTATGTAGTCTTCCTCTTGTTCGCTGTGCTCTTCAACATCTTCCTTTCCCCTGCATAATTCCACACTACACGAATGAATGCGTTTTGAATAACGGAAATAGGGCATTTCAGGGACTTGGAAGGTTATCCAAAAAATGTAAATCTCTACTGCAGGAGAGAAGAGATTTAAATGGAAAGAGGGACGCCCTGTTGCTGAAGTGTAGTATTACACACAGCACAAATTCTCTTTGTTACATGTTTATTTTAGTGATGTTGATAATGATCTGAACTCAATATATCTGTTTGTTGGTGTTACAGGTCTTTTTTTTTCATGATGTTTGTCCTGATTGGTCAGTGAGGTAGGACATTATTTCCCCAAGCAGGTCCTTTCCTCCAAGTTTTAGATTGGCCTACAAGTGAGTATTTTCAAGCCATCAGGAGCAGTGTAACATCTGTTGGTGACTGGAGTGTCAATTCATAAACAAGCCATGACAATGGCCCAATGCCAGGTTATTGTTTCACTTCCCTGTTGACAGGATGAGACGCTGTCTGCCAATAGTACATATCAATGTAAATCTGCTCACACATCCTTGGCTAAGCCTCTTTCAATGATAATTTATTGAACAcatatttttaatttgttttccTCTTTCCTCTTCTACTTGCCAGCAGTTTGTAATTTGTCTGTTAGTCCTTTGGGTGTTTTAGGATGTTTGTGTACAGTGGAACAGTAGAGGGCAGCACTTTCCATTGTATATTAGGCATTTTCTATATCATTTCAATTGTACCAGTGTGTATTAGTCTACATAATCTTTTTAGTAAAATGAAAAGGCCTCAATTTAAGGCCATCTGGGTGGCACATTTTTATTGAAGATATCTTCAAATGTTTCTCCTAAACTTATTTGTGGTGATATTTGTTAGTTGGTATCTGAAACCAAATGGTggttaaaaaaaacaatacatactTTAGGTATTTATGTAATTACAACTTTACCATGTACTTTCCAAGTAAATCTTAGGTAGATAGCATAACATTCCAAATGTAAATTACTTGTTTTTTATTTGAAGCTTTTTTTTtctgctttttaaaaaaaaaatcaccagaCTTGATACTGTATCTTCATCACTTttacattaaataaatattttacatacatttc

Function

NR:

description
rhomboid-related protein 2-like

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG:

id description
K02857 RHBDL1_2_3; rhomboid-related protein 1/2/3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021595363.2 False 2109 mRNA 0.43 8 28322929 28334880
XM_021595346.2 False 2127 mRNA 0.44 8 28323038 28334880
XM_021595352.2 False 2339 mRNA 0.43 8 28323045 28334880
XM_021595359.2 True 2335 mRNA 0.43 8 28323045 28334880

Neighbor

gene id symbol gene type direction distance location
akirin1 LOC100499583 coding upstream 1610 28304190 ~ 28321319 (+)
LOC110517126 LOC106582934 coding upstream 27112 28286738 ~ 28295817 (+)
LOC110517101 srr35 coding upstream 53087 28265591 ~ 28269842 (+)
LOC110517089 LOC106582922 coding upstream 66420 28255151 ~ 28256509 (+)
myom3 LOC106582914 coding upstream 68908 28175840 ~ 28254021 (+)
LOC110517184 LOC106582959 coding downstream 6464 28341344 ~ 28343461 (+)
LOC110504005 LOC106605136 coding downstream 17318 28352198 ~ 28366736 (+)
pou3f1 LOC106582989 coding downstream 392060 28726940 ~ 28730399 (+)
LOC110517255 LOC106605133 coding downstream 464353 28799233 ~ 28841059 (+)
LOC110517275 LOC106583018 coding downstream 660943 28995823 ~ 29034924 (+)
G241637 NA non-coding upstream 190622 28130891 ~ 28132307 (+)
G241564 NA non-coding upstream 298291 28010311 ~ 28024638 (+)
G241532 NA non-coding upstream 386998 27935256 ~ 27935931 (+)
G241516 NA non-coding upstream 399607 27893835 ~ 27923322 (+)
G241747 NA non-coding downstream 36007 28370887 ~ 28371228 (+)
G241749 NA non-coding downstream 38963 28373843 ~ 28374141 (+)
G241750 NA non-coding downstream 39397 28374277 ~ 28374624 (+)
G241751 NA non-coding downstream 39863 28374743 ~ 28375028 (+)
G241757 NA non-coding downstream 48272 28383152 ~ 28383992 (+)
LOC110516993 LOC106605183 other upstream 573203 27725189 ~ 27749972 (+)
LOC110516984 NA other upstream 599135 27705985 ~ 27723794 (+)
G241150 LOC106582751 other upstream 764397 27556172 ~ 27558532 (+)
LOC110516767 LOC106605158 other upstream 1058536 27240708 ~ 27264405 (+)
G240244 NA other upstream 1270975 27051186 ~ 27051954 (+)
G243679 LOC107756720 other downstream 1333499 29668379 ~ 29690796 (+)
G244292 LOC106583212 other downstream 1797519 30132399 ~ 30137564 (+)
G244691 NA other downstream 2296890 30631770 ~ 30632533 (+)
G244851 cep85 other downstream 2530686 30865566 ~ 30874608 (+)

Expression


Co-expression Network