LOC110517198 (LOC106582967)


Basic Information

Item Value
gene id LOC110517198
gene name LOC106582967
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 28343744 ~ 28353662 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021595369.2
AAGCACGAGCGTGCTTGTATTGACTTCAAGGCTACCAGGGAAACTTGCTTGTTGTTGCAGGCGGTGAGAGTCGTCAGAACGTCAGTTAGCAGTAAAGCCAAGGTTTAACGTTAATTTCATAATGGCACACTACAGAGCTTCAGAGTCCAAACGAGAGCAGTTTCGGAGATACCTGGAGAAGGCTGGTGTCCTTGACAGCCTCACCAGTGTGCTGGTGGCATTGTATGAAGAGACGGAGAAACCCAACAATGCACTTGATTTCCTCAAGCAGCACTTGGGTGTGGCTGGCCAGGAGTCTGCAGACACTGAGGCACTCCAGCAGGAGCTAAGAGACATGAGGCAGAGGTGTGAGCTGCTGGCCGAGGAGAACAAAGACCTCAAGAACAGGCTTCAACGCTATGAGCCTACGCAAGAGGATGGAGCTGCCGAATAAAAAGTGACTCTGCTTTATTGAAGTCAGTTTGTTAGAAACTACGATTTTTATGGCAAGCCAAAACCAACAACGGGAGGCAAGAGAGTTTATGCACCTCTgttcttttttattttctttatacTCTGTTTAAatatttaacttattttgtatatttGATATATTGAAATATAATAGCTTTTGTCCCTTTATGATTGTCTCCTCCCTCTCATAAAAGCAAACCCCCCTTTTCTGCTTTCAGTGTACTTCAGCCTACTGCATACCAATGCTTTGTCTCTAGTAAACAAACGGTAACA
>XM_036973742.1
tgtttagtgagtccgccagatcagatgcaataaggtatgaccagggatgttcacttgGCTTCAGAGTCCAAACGAGAGCAGTTTCGGAGATACCTGGAGAAGGCTGGTGTCCTTGACAGCCTCACCAGTGTGCTGGTGGCATTGTATGAAGAGACGGAGAAACCCAACAATGCACTTGATTTCCTCAAGCAGCACTTGGGTGTGGCTGGCCAGGAGTCTGCAGACACTGAGGCACTCCAGCAGGAGCTAAGAGACATGAGGCAGAGGTGTGAGCTGCTGGCCGAGGAGAACAAAGACCTCAAGAACAGGCTTCAACGCTATGAGCCTACGCAAGAGGATGGAGCTGCCGAATAAAAAGTGACTCTGCTTTATTGAAGTCAGTTTGTTAGAAACTACGATTTTTATGGCAAGCCAAAACCAACAACGGGAGGCAAGAGAGTTTATGCACCTCTgttcttttttattttctttatacTCTGTTTAAatatttaacttattttgtatatttGATATATTGAAATATAATAGCTTTTGTCCCTTTATGATTGTCTCCTCCCTCTCATAAAAGCAAACCCCCCTTTTCTGCTTTCAGTGTACTTCAGCCTACTGCATACCAATGCTTTGTCTCTAGTAAACAAACGGTAACA

Function

NR:

description
PREDICTED: C-Myc-binding protein-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021595369.2 False 726 mRNA 0.44 5 28343744 28352096
XM_036973742.1 True 647 mRNA 0.44 5 28343744 28353662

Neighbor

gene id symbol gene type direction distance location
LOC110517114 pnrc2 coding downstream 63667 28275767 ~ 28280077 (-)
si:ch211-107n13.1 LOC106582885 coding downstream 556264 27769884 ~ 27787480 (-)
ago1 LOC106582818 coding downstream 660827 27659143 ~ 27682917 (-)
LOC110516971 LOC106582842 coding downstream 684886 27611085 ~ 27658858 (-)
LOC118944661 NA coding downstream 734144 27593069 ~ 27609600 (-)
LOC110517222 NA coding upstream 365878 28719454 ~ 28725294 (-)
LOC110517244 LOC106582991 coding upstream 427934 28781383 ~ 28786278 (-)
rspo1 LOC106605132 coding upstream 537758 28891420 ~ 28921524 (-)
dnali1 dnali1 coding upstream 681266 29034928 ~ 29039438 (-)
LOC110517348 LOC106604987 coding upstream 842484 29196146 ~ 29201564 (-)
G242121 NA non-coding downstream 3651 28337383 ~ 28340093 (-)
G242076 NA non-coding downstream 10374 28310855 ~ 28333370 (-)
G242092 NA non-coding downstream 36807 28297304 ~ 28306937 (-)
G242078 NA non-coding downstream 46554 28272677 ~ 28297190 (-)
G242021 LOC106582922 non-coding downstream 87235 28205275 ~ 28256509 (-)
G242126 NA non-coding upstream 15482 28369144 ~ 28369386 (-)
G242127 NA non-coding upstream 17308 28370970 ~ 28371221 (-)
G242129 NA non-coding upstream 19032 28372694 ~ 28372894 (-)
G242133 NA non-coding upstream 29495 28383157 ~ 28383992 (-)
G242182 NA non-coding upstream 73343 28427005 ~ 28427289 (-)
G240906 NA other downstream 1158639 27184660 ~ 27185105 (-)
LOC110516678 LOC106605187 other downstream 1185080 27154680 ~ 27159987 (-)
LOC110516667 LOC106582624 other downstream 1231122 27111084 ~ 27127488 (-)
G242539 LOC106582989 other upstream 373308 28726970 ~ 28730375 (-)
G242796 NA other upstream 592079 28945741 ~ 28946292 (-)
G243154 NA other upstream 778654 29132316 ~ 29152629 (-)

Expression


Co-expression Network