LOC110504005 (LOC106605136)


Basic Information

Item Value
gene id LOC110504005
gene name LOC106605136
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 28352198 ~ 28366736 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036973741.1
TATTTTGATTGAATGTGGATTCATTCCACAGATGGAAAACAATACTGGAAGGACATTGATTGTACAATGAATCAAAGGGATACATCCATCGtgagttgaccccccccccccagtcaaaACTATACATTTTCAGCCTAAATATCTCCAGTTGAAAGGTCACAAAACAAGCATGTGCCCTagcagagatactgtatataatgacgagatgctcttGTCTCCGCACTAACTAGCGGGAAGGCATACGGTCTGTTTATCGGTCTCATTTGAGGTATACATTAAGTTCGGTCTGCTTATCGCTGTATTCCCACagggacagattttgatgggagtGGACCCTCTCGCTTCGTTTCGTCCTCTCTGGCAGTAGCCTACTTGGTCAGCTGACTGCAAAACATCTGACAAGGGTAGAACCAGTCTCGACAGATTGACACCCTGGTTAACCAACTATTATTCGCATCCTATGTACATCGTCCAATTAGATTCGGAGGTGATTGAAGAGCAGGGAAAGGGAAACATAGGGGACCCGAAGATCTGAAGGAGAATATTACAACACACTGGATTTGCAAGTAACATTGGCATTATTGATGCATTTAAACTGTATTTTACGTTTTATTGGCGGTGTGGAAGGATTTTTCGGTAAAAGCAGGATTGCGTAAAACTAATAGGGTGAGGGGGGATTGGGGGAAGCGAGCGTCGTCGGGTCAAAATGTCGATTCAGTACGAAGTGGAACCGCTGGCAGACAGCTACGGGGTAGCGGACTCGTTTCCCAAAGATTTTGGCTATGGAGAAGAGGAGGCCGACATCGAGGATAGCCCAACTCCATCTGACAGCAAACCTAGAATTCTGTTGATGGGTTTACGAAGAAGTGGCAAGTCGTCAATACAGAAGGTGGTATTCCACAAAATGTCTCCCAACGAGACGTTGTTCCTGGAGAGCACTAACAAGATCTACAAGGACGACATCTCCAGTAGCTCGTTTGTCAACTTCCAGATCTGGGACTTCCCGGGTCAAGTGGACTTCTTCGACCCCACCTTTGACTACGAGATGATTTTCAGAGGCACGGGGGCTTTGATATTCGTCATTGACGCACAGGATGACTATGTGGAGGCGTTGGGCAGACTCCACCTCACCGTGTCGCGGGCCTACAGGGTCAACCCTGAGATTAACTTTGAGGTGTTCATCCACAAAGTGGACGGCCTCTCCGACGACCACAAGATCGAGACCCAGAGGGACATCCACCAGAGAGCCAACGACGACCTGGCAGACGCCAGCCTAGAGAAGCTTCACCTCAGTTTCTATTTGACAAGTATCTATGACCACTCAATATTCGAGGCCTTCAGTAAAGTGGTCCAGAAGCTTATCCCACAGCTGCCAACACTGGAAAACCTTCTAAACATCTTTATATCTAACTCGGGCATAGAGAAGGCCTTTCTGTTTGACGTGGTCAGCAAGATCTACATCGCCACAGACAGCAGTCCGGTGGACATGCAGTCTTATGAGCTGTGCTGCGACATGATCGACGTGGTTATAGATGTCTCCTGCATCTATGGTCTGAAGGAGAACGGCAGTGGTAGTGCCTACGACAAGGAGTCCATGGCCATCATCAAGCTGAACAACACCACAGTCCTCTACCTGAAAGAGGTCACCAAGTTCCTGGCGTTGGTCTGCATCCTCCGGGAGGAGAGCTTTGAGCGCAAAGGCTTGATAGACTACAACTTCCACTGTTTCCGGAAGGCCATCCACGAGGTGTTTGAGGTGGGCGTTTCCACACCGTGGACGGGCTCCCAGGCGGCCGGCACGCCCTGCACCAAGGCTGTGACACTCAACGGCATGCCCCGGAGCACTGtctaaacacagacagacagactgacggaGAGATGataggaaaggacagaaagatcTCAAATAAATAGCTGAGGAGGGATCGTGCGGAGAAGACTAATGGATTGGGGTTTTCAGTAAACCAATCATAACTCTTGCACACAGATCCTAAAAATCACAGGAAGAGGACTAGAGCTAAAAATTCAAATGAGTCAGGGCTGAACCCGAAGCTCAGAGGGGAAGGAGGACCGCGAGCTGACAAAGCTAGGATGGAAGGGAAACTAAATGCAGAGATACCAGGAACATTCATACATTTCGTGGGAATGCAAGGCATTGTTTTCCGCTGATCGGCACGAAAACAGCTAAATGAAAGTCCAACTGGACTGGTATACACAAGCAAAAGCGTATTTGGCATTTGGGAACTTTCAGTGAGATAGGCCTCACGTGCTGCAAGTCCCAAGAGCCCTGAGGAAGCTTGGTAATATCGTTGTCTGTTTTAGCTGCTGGTTCATCCATGTGAAGAAGTacttataaaataaaaaaatgaaacattGATGTAACCCTCGATAAGGACAAGAAACTGTAAAGGCTGTGTGGGGATCAGTATAGTTGTGTAACCCTGTGCAGACTTATGGGTCGAAGTCTCTAAGAAATGCTTGGTGTTTATCCAAAATGCACATAGTATGCCACTTTCTCAAGGCCTTACTTAgattgagcttgcctgttgcAAAGTTTCTCTCACTACTCACTTGCCTGTGTGCTGCCCAAGACTTTGCTTCTGGCTTCACTCATTCTGAAGAAAACAGGGTTCCTCAGAGTGCAAAAGGGATTGTAGTGTCTACATTTTTCTGCTTCTGttctgcgcgtgtgtgtgtctggaaaAGAGGATAGTTGGCGTTTATGGATTCACGACTGCCCCATCATGTTGATTTGCCAGTGTCGGCCCTATGCTCCAAGTTGCTGAAGTGTCATACTGTATAATGAATGATATGCCATGTTGGAAaactgagcaaaaaaaaaaaaaaacctgttaCCAGCGGTTTGATCAGTGATGCTTATAGAATCTAGAATGTTGTTTCAGAATCTATCTACAATTTGTTGCAGTTGGATATCGGATTCATTAGAATCTTGCACAGACAAAATATTCTAAATATAGTCTTCTGGAAACACCCCATTGCACTGGCTTATTCTCTTGGCTATCAAATGATGTATGGAGTACAAGCACATTCTAGATATATCTATCTCCCTTATGCATAAAGTAGTCAGTTTAGCCATATTTTCTGACACTCAATCGTAATACTGCCCCGCATGGATGCTTGCCATAGACCAAATGCTACTAACAGCCAATCAACTATGCCAATCTTCAACTAATGTGGGCAAACTCCTACATGTATAACGTCACACGTTCTTTGAGCGTGACCCTTTACCCGAGCAGGTGGAGTCCGATGCCATTAGGAATGagctagtctggtcccagatctgtttgtgccgtctTGCAAAGGCGTGACCATGAATAAAATAGTTGgcaagacggcacaaacagcTCTAGGACCAGTCTAACCAGGAAAGGTCTCTGATGGGATCTGTACATTCCGGTTGTGTGGCATATAGCGACATATCATTTTAATGATGGCTATGATAATGATAAACAGAATGGTGGCAATTAAATGCCGGTCACCACGTCTTCAAACCCTGCCTTACGCGATTAGTCGATTTCATTCACTCATCCGCCATCGACGCCGTCCTGCGCATATAGGACAGAAGCAACGACTTTGGaaatgttctccactgtgctttAGCTCCACTGATGTTGGTCATCATTTCGGTGTCTATACTATATCTATATTAGGTCAGTCTCAAGAGTCACAAGGAGTTGGGCCTTTGCTTCTTGTTTGTCTGAGGAGGTTGGGGTTTAATGCATTGGGCCAACAGATGTGGAGTGTTCTTCGCAGACGAGTTGTGTGGAAGGTGAATTGTTTGTTCAGGTCCAGTTCAGTCACTTTCCAGCACTCAGTGCCATATAGAACAACACTGGTGGATTTAGAATTtggcctttgtgctgttgtcttcaCTTACACATTTGTTGGAACTTTGAAGGTTTCGCTTTCGCTGAGGGTTCTGTTCAAGGACTTTGTCAGTTTTATCACAGCAATCCACACGCAAAACAAGAACCGCAGCATGAAGCCAATATGAAAACCCATTCCAAGCATGTATGCAATGATGTGTCGTCAAGCTAAATTATTCTCAACATAACATTGCTCATTGTATTTCACTGTGGGTAAGGGAGACCAGGTCTAACAATGAAAAATGAATCCTGGGAAAAAAATGACCAAACTGTATTATTCTGCCCTGGATGGAAGAAAGAAAGGTGTTGTTTTTTTGgctgtttgttttgttcattaGATTTTTTGCAAATAGTAGACATTTGGGACTATAGTAAATCCACTGTTGTCAGTTCTGCCAAAGTTTTTATCATTCACATGAAATAAACACTTGCACATCAAAAGCAAA

Function

NR:

description
ras-related GTP-binding protein C-like isoform X1

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K16186 RRAGC_D; Ras-related GTP-binding protein C/D

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036973741.1 True 4333 mRNA 0.45 7 28352198 28366736

Neighbor

gene id symbol gene type direction distance location
LOC110517184 LOC106582959 coding upstream 8737 28341344 ~ 28343461 (+)
rhbdl2 LOC106605138 coding upstream 17318 28322929 ~ 28334880 (+)
akirin1 LOC100499583 coding upstream 30879 28304190 ~ 28321319 (+)
LOC110517126 LOC106582934 coding upstream 56381 28286738 ~ 28295817 (+)
LOC110517101 srr35 coding upstream 82356 28265591 ~ 28269842 (+)
pou3f1 LOC106582989 coding downstream 360204 28726940 ~ 28730399 (+)
LOC110517255 LOC106605133 coding downstream 432497 28799233 ~ 28841059 (+)
LOC110517275 LOC106583018 coding downstream 629087 28995823 ~ 29034924 (+)
LOC110517283 LOC106583031 coding downstream 672732 29039468 ~ 29045846 (+)
si:ch211-1i11.3 LOC106583027 coding downstream 681861 29048597 ~ 29083292 (+)
G241637 NA non-coding upstream 219891 28130891 ~ 28132307 (+)
G241564 NA non-coding upstream 327560 28010311 ~ 28024638 (+)
G241532 NA non-coding upstream 416267 27935256 ~ 27935931 (+)
G241516 NA non-coding upstream 428876 27893835 ~ 27923322 (+)
G241747 NA non-coding downstream 4151 28370887 ~ 28371228 (+)
G241749 NA non-coding downstream 7107 28373843 ~ 28374141 (+)
G241750 NA non-coding downstream 7541 28374277 ~ 28374624 (+)
G241751 NA non-coding downstream 8007 28374743 ~ 28375028 (+)
G241757 NA non-coding downstream 16416 28383152 ~ 28383992 (+)
LOC110516993 LOC106605183 other upstream 602472 27725189 ~ 27749972 (+)
LOC110516984 NA other upstream 628404 27705985 ~ 27723794 (+)
G241150 LOC106582751 other upstream 793666 27556172 ~ 27558532 (+)
LOC110516767 LOC106605158 other upstream 1087805 27240708 ~ 27264405 (+)
G240244 NA other upstream 1300244 27051186 ~ 27051954 (+)
G243679 LOC107756720 other downstream 1301643 29668379 ~ 29690796 (+)
G244292 LOC106583212 other downstream 1765663 30132399 ~ 30137564 (+)
G244691 NA other downstream 2265034 30631770 ~ 30632533 (+)
G244851 cep85 other downstream 2498830 30865566 ~ 30874608 (+)

Expression


Co-expression Network