LOC110517222


Basic Information

Item Value
gene id LOC110517222
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 28719454 ~ 28725294 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002472529.2
AGCCCCGGAGACgctgaggggtagagaggggggagatgcgAAGATTGAAAGGGATCTTTGCAAACACAATCACGTTCTTAAATGGAAATGCGGGGCTTTAAACAAATCTTACATCTCTCCCGTTCCAGTCGCCTAAAACTCCGCAATCAGGCGCATGTTCCACTCCTTCTAAAACCGAAGCTTTTTGTAAGCTTTTTCAGGCATCACtctttattttaattatttacctgaatgcatttttttttatctcacgCGCGTGTTTATGTTGTTCTCGTCTCTCACATGGCACTGCTCTCTGTTTGTAGGCTACAGTGGGACGCACTGTACGATTTATTCATTTCAATCCCTGGACTAGAGCACGATTTAACGAGTTCCAAACCTTCCATCTAACTCCGTGACGGGCTTGAAAGCATCAGGCTTGGGATGCCTAAGCCCCTTCTCAGcttctgtctacctgtctgctgGGGTGTTGGTGCCTGGGCTTCAACCATCAGCCCTAACCTGTGTGGCTTCCTGTCCGTCCACAGAGGGACCCAATCCTCTACTTTGAATTCAAAGggGCCTGAAGACAACACAGTCTCACGCAGGCTCAGCAACACACAGGTTACGACCCCAACAGGACATACCACGCCACCCGGCGGGCTGAGTTGTTACGCACTAcacgtgcgtgtgtatgtgtgtaagccacaggaggttggtgacaccttaattggggaggatgggcttgtggtTAGAGCTGGAGCAGAatcatggtttccatgtgtttgatgtgctgagctgtcctcccctcagcagcctccgctgGTGTAAGCATGTTGCCCACTGCCGAATGTCCATCCGCCCTGCGTCTCCCCCTCAGCCCACCCATCCTTCCTCTCTACCTATCTCCCCTTTCATCCTGTCTCTTTTCTTCATACTGGACCGGAATATGAACGCGCAAAGTTGGCctcacggagagagagagagagagagagagagtccacgTTACCTGACGTAAAATAATAGATAGATTCACTTCTGCAGGTTGAATGTTGTACTTTATGACAAATTACATCAATTAAAGAGATAGTTTGCTGTGTTTAAATATTGATATACTGTAGATTTTAGTAAGAGGACACGTGGATTTTCTTGAGTACACAattcaaaatatgtttttctATAATAGGAGGATTGTGTCTCTGTTGAAATTTGGGTACCCCAATAAATGAATTTGAAAAACCTCTCAGTTTAGAAGAGGTTAGTAACAGGTGaggaaaacatttttaaaaaacaaaagcTGTAAAAGTTACGTGAATCAATGAGATGTGACTGAACTATTTTCCATTTGACTATTGCAAAATTATTTGTTGGTAACATCAATTGATACTGT
>TU276998
GGGGCTTTAAACAAATCTTACATCTCTCCCGTTCCAGTCGCCTAAAACTCCGCAATCAGGCGCATGTTCCACTCCTTCTAAAACCGAAGCTTTTTGTAAGCTTTTTCAGGCATCACtctttattttaattatttacctgaatgcatttttttttatctcacgCGCGTGTTTATGTTGTTCTCGTCTCTCACATGGCACTGCTCTCTGTTTGTAGGCTACAGTGGGACGCACTGTACGATTTATTCATTTCAATCCCTGGACTAGAGCACGATTTAACGAGTTCCAAACCTTCCATCTAACTCCGTGACGGGCTTGAAAGCATCAGGCTTGGGATGCCTAAGCCCCTTCTCAGcttctgtctacctgtctgctgGGGTGTTGGTGCCTGGGCTTCAACCATCAGCCCTAACCTGTGTGGCTTCCTGTCCGTCCACAGAGGGACCCAATCCTCTACTTTGAATTCAAAGggGCCTGAAGACAACACAGTCTCACGCAGGCTCAGCAACACACAGGTTACGACCCCAACAGGACATACCACGCCACCCGGCGGGCTGAGTTGTTACGCACTAcacgtgcgtgtgtatgtgtgtaagccacaggaggttggtgacaccttaattggggaggatgggcttgtggtTAGAGCTGGAGCAGAatcatggtttccatgtgtttgatgtgctgagctgtcctcccctcagcagcctccgctgGTGTAAGCATGTTGCCCACTGCCGAATGTCCATCCGCCCTGCGTCTCCCCCTCAGCCCACCCATCCTTCCTCTCTACCTATCTCCCCTTTCATCCTGTCTCTTTTCTTCATACTGGACCGGAATATGAACGCGCAAAGTTGGCctcacggagagagagagagagagagagagagtccacgTTACCTGACGTAAAATAATAGATAGATTCACTTCTGCAGGTTGAATGTTGTACTTTATGACAAATTACATCAATTAAAGAGATAGTTTGCTGTGTTTAAATATTGATATACTGTAGATTTTAGTAAGAGGACACGTGGATTTTCTTGAGTACACAattcaaaatatgtttttctATAATAGGAGGATTGTGTCTCTGTTGAAATTTGGGTACCCCAATAAATGAATTTGAAAAACCTCTCAGTTTAGAAGAGGTTAGTAACAGGTGaggaaaacatttttaaaaaacaaaagcTGTAAAAGTTACGTGAATCAATGAGATGTGACTGAACTATTTTCCATTTGACTATTGCAAAATTATTTGTTGGTAACATCAATTGATACTGTTCACAATGGAAGACAACAAGTGGAATGTAACAATAGTGTACACACCTACTTCAATgtcaggcagggtagcctagtggttagagcat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002472529.2 False 1369 mRNA 0.45 3 28719540 28725294
TU276998 True 1364 TUCP 0.45 3 28719454 28725203

Neighbor

gene id symbol gene type direction distance location
LOC110517198 LOC106582967 coding downstream 365878 28343744 ~ 28353662 (-)
LOC110517114 pnrc2 coding downstream 439463 28275767 ~ 28280077 (-)
si:ch211-107n13.1 LOC106582885 coding downstream 932060 27769884 ~ 27787480 (-)
ago1 LOC106582818 coding downstream 1036623 27659143 ~ 27682917 (-)
LOC110516971 LOC106582842 coding downstream 1060682 27611085 ~ 27658858 (-)
LOC110517244 LOC106582991 coding upstream 56302 28781383 ~ 28786278 (-)
rspo1 LOC106605132 coding upstream 166126 28891420 ~ 28921524 (-)
dnali1 dnali1 coding upstream 309634 29034928 ~ 29039438 (-)
LOC110517348 LOC106604987 coding upstream 470852 29196146 ~ 29201564 (-)
LOC110517416 LOC106605123 coding upstream 596737 29322031 ~ 29388582 (-)
G242367 NA non-coding downstream 114921 28604113 ~ 28604619 (-)
G242401 NA non-coding downstream 121036 28598187 ~ 28598504 (-)
G242398 NA non-coding downstream 123992 28595278 ~ 28595548 (-)
G242397 NA non-coding downstream 124294 28594992 ~ 28595246 (-)
G242374 NA non-coding downstream 129654 28546305 ~ 28589886 (-)
G242547 NA non-coding upstream 10588 28735882 ~ 28736388 (-)
G242585 NA non-coding upstream 47819 28773113 ~ 28773350 (-)
G242607 NA non-coding upstream 69707 28795001 ~ 28796190 (-)
G242657 NA non-coding upstream 104591 28829885 ~ 28833286 (-)
G242021 LOC106582922 other downstream 463031 28205275 ~ 28256509 (-)
G240906 NA other downstream 1534435 27184660 ~ 27185105 (-)
LOC110516678 LOC106605187 other downstream 1560876 27154680 ~ 27159987 (-)
LOC110516667 LOC106582624 other downstream 1606918 27111084 ~ 27127488 (-)
G242539 LOC106582989 other upstream 1676 28726970 ~ 28730375 (-)
G242796 NA other upstream 220447 28945741 ~ 28946292 (-)
G243154 NA other upstream 407022 29132316 ~ 29152629 (-)
LOC110517486 LOC106583166 other upstream 731187 29456450 ~ 29458390 (-)

Expression


Co-expression Network