pou3f1 (LOC106582989)


Basic Information

Item Value
gene id pou3f1
gene name LOC106582989
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 28726940 ~ 28730399 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021595383.2
TTAGCTCTAAAGCCTCCAGACCTCCGAAGTACTCGTCAGTTTTCGAAGTCGGAGCCATGGCTACAACAGCTCAGTATATTCCGCGGAATAACTCCTTACCGTCCAACCCGCTCATGCATCCGGATTCGGACAGGATGCACCAGGGGACGACCTACAGAGAGGTGCAGAAAATGATGCACCACGAGTACTTGCAAGGGCTAGCGGCGACCAACACCGGACATCCGATGAGCCTGACGCACCACCAGTGGCTGCCCACCTCCAACACCGACTGGACCAGCGGCACCCATATCGGGCAACAGGAGCACAACAAAGCCAGCGTTCAGGCGAGCCGAGAGGACCTGAGCAGCGGCTTCCACCATAGATCTCACCTGGTGCACCAGCAGACGCAGAGTAGCCACCATGGGTCGTGGGCGCCAACCACGACGCACCACTTGTCCCCGCTGTCTCCTGCCTCCAACGGGCACCAGTCGCTAGTCTATTCGCAGCCGGGATACACGAACCTCAACGCCATGCTAAGTCCCCAGCCCGCCTCTCTGCACCACGGCATGCGGGACCCGCTCCACGACGATACAGGTAGCCATGACAACCAGATGGAGTCCCCCCAGCAGGCGTTCAGCCACCACCAGGACCACTCAGACGAGGATGCGCCCAGCTCCGACGACCTGGAGCAGTTCGCCAAGCAGTTCAAGCAGCGAAGGATCAAACTGGGCTTTACACAGGCGGACGTGGGCTTGGCCTTGGGCACCCTGTACGGAAACGTCTTTTCTCAGACCACTATCTGCAGGTTCGAGGCACTGCAGCTCAGCTTCAAGAACATGTGCAAACTTAAGCCACTGCTAAACAAGTGGTTGGAGGAGACAGACTCAAACACTGGCAGCCCCACCAATTTGGACAAGATTGCTGCGCAGGGCAGGAAAAGAAAGAAGAGGACCTCGATTGAAGTTGGGGTGAAAGGGGCGCTGGAAAATCATTTCTTAAAATGTCCCAAGCCCTCTGCCCATGAAATCACCAGTTTAGCCGTCTCTCTTCAATTAGAAAAAGAGGTTGTCCGTGTTTGGTTTTGCAACAGAAGACAAAAAGAGAAAAGAATGACGCCGATAGGGGTCCCTCATCCGAATATGGAGGACGTATATTCTCAAGCGGAGACACCCCCTCTTCACCACACATTACAGAGTCCTGTGCAGTGACTGTTTTCATGAACAATCCTACAATTTCGGGGGAAACAAGAAAAAAAGGGAAAGGACTATGGAGTTTACAGTATTTCATTTTGTTTTactgagagagaacagagacacgGCAAAGTTGGACAGACAGATGAGTTTTGTCCCAGTAACCGGAGCTTGAGTTACAACAACAAATAGGTAGAATGGAAAATGGTTGACAAGAAAAACATACACTATTACTGAATTGATTTCGTTCACATTTTAAATGAAACAAATATCTTTATTTGCCAAAATTCTATGGAGGAGGTAAAGTAAATTCGATGTTTCGTGGCTGTTCAAAGGGTAACGATTAAATGTTGCAAGTGGTGTCTTGAACTGATGGCGCTCACCACAGTGCGAGGTGGTTGCCTGAAAATGATCAAcaaaggagacacacacacaatgaacatTTTGCTTTTCAGGCTTAAAACCGATTAACCAATATTTCTAATTATAAGCCTATTCTTTCGCTTTGTTCTATTAATTGtgatgtttgatttgtttggaaTATTTTAACTTCAGTGTCTCTTCTGTTCTGAAGACTGTTTTTATTGTTTCTCTCATTTTATTAGTGTACTGTAACTCATCAAAAACGCCTCCATTACTCCTACTGTTGACACTACGTCATCTGGCCAGAGGAGTTTGTGAAAAGATGATGGAAATTATGGCACCCGTTGAATGACAAAAATCCCCACACTTAAATGTCAGATGCATTTCAAAATTGACGAATGCAGCAGGACAGCTCACGTCTGGCAGCCTTAAAACATGTATGCTTTGCAGATAGCAACAGACGCTAAAAAGGGCAATATGGATGAATACTTTATGAAACATGTGTTTCTTGTCGGTTTTCAGTATTTGTTTTGATTGTTATTTTCCTTTTGTATGGAGCACTTATTCTTTCGTTGAAATGATCATTGCAATTTTATATTCGTTTTGTTTTCAGAATTTGTTTTGAGGTAGGCCTTTACTCACTATTTTCATGTTTACAGGTTCCTAAAATCACTCCAGGGCACCGTCAGCAACTTGCATTGCTAACTGCCAAGCTATTCCAACCACCTTTTGGAAAGAGATTGGTTTAATACGAAATGAAAGTGATATTCTCAGGTAACTTCAGTGCCCCAGGTCGAAGTGTCACGCTGTTCTCATTCTTTATATCATAATAAAAAGTAGAACTTGAATTCTTTACCTTCTATATTGATCTGAAAGGTAGCCAATGCTACACCCCATTAATTTATACCATTCCTATTATTGTATTATAAACACTATATACGGATAATTTCAGAACATTCTCGAATGAAAAGTGATGAAGGGACctgttttacatatatatatattttttcggATATGGAGAAGAAAGGAAAAAATCTGATTAACTAGCCTACTCGTGCGTTGCGTGTCATTTCTCAAGGCTCTGGTACATTTTGATGGACAGTAGCCTATAGTACAATTGCGTACTGCAGACAGTGCTATTCGATACAGCGGGAAAAAACTTTCTTCAAAAAGGTGTTTGAAATAAAATGTTGCCAGGATTATTTCCGATGTGTAAATATGTCGAATATGTAAACATGTATTTGTTCTgagatatttttttgttgttggtttgttttgtttttccggCAGTTTTGTACACTTACTAATTCCAAGAAGATATTTTAATATGATTTCATTTATGAATCTgaccatttatatatatatttatttcctAAATGTGTTTGGAGCTTTTTGTTTGGCTCGGTTAATGGTTATGTTGCAGTGGATTTCAATATGTTTTGTTCACTACATTGGTTGTATGTTGATTGCTAAATGTAGACTGCAAAGTCACATTTCTCCTATTTATGTTATAGTAATATTTTATTACTTACATAAAACGTATATACAAGAAAAGGTATTTTGTCTTCATTCAAAAACCAAACCGTTTTCCTTTGTTGCTTACTATTGTGAAACCACCagatgagaaaaaatatatacaaatgtatgtggTAAACAGAAATCAAATGCATTAAGATAGTGTGTTGTGCTTAACCACTCTGATTTAAACAGTCAGAAAGTGTTGATTGCAACATGTGTTCAGTTTAAACCAGTATTCCGTTATGTAATTGGGATTAATTTAAATCAGAGGCTGTGTACATGTGCTGTTTTAAAGGGAATAGACAACAGTATGTTTACCTCAGGCATTCATATCCGCATCAAGTCCACACAATCCCTGACGTTGTTCACATCTCTGTGTAATCGCAGTATTAAATTGTGCAATATTATTA

Function

NR:

description
POU domain, class 3, transcription factor 1

GO: NA

KEGG:

id description
K09365 POU3F, OTF; POU domain transcription factor, class 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021595383.2 True 3460 mRNA 0.42 1 28726940 28730399

Neighbor

gene id symbol gene type direction distance location
LOC110504005 LOC106605136 coding upstream 360204 28352198 ~ 28366736 (+)
LOC110517184 LOC106582959 coding upstream 383479 28341344 ~ 28343461 (+)
rhbdl2 LOC106605138 coding upstream 392060 28322929 ~ 28334880 (+)
akirin1 LOC100499583 coding upstream 405621 28304190 ~ 28321319 (+)
LOC110517126 LOC106582934 coding upstream 431123 28286738 ~ 28295817 (+)
LOC110517255 LOC106605133 coding downstream 68834 28799233 ~ 28841059 (+)
LOC110517275 LOC106583018 coding downstream 265424 28995823 ~ 29034924 (+)
LOC110517283 LOC106583031 coding downstream 309069 29039468 ~ 29045846 (+)
si:ch211-1i11.3 LOC106583027 coding downstream 318198 29048597 ~ 29083292 (+)
map7d1a LOC106583045 coding downstream 374106 29104505 ~ 29184360 (+)
G242453 NA non-coding upstream 6598 28667857 ~ 28720342 (+)
G242412 NA non-coding upstream 114980 28611759 ~ 28611960 (+)
G242405 NA non-coding upstream 118537 28607942 ~ 28608403 (+)
G242366 NA non-coding upstream 122243 28604035 ~ 28604697 (+)
G242365 NA non-coding upstream 124816 28601826 ~ 28602124 (+)
G242556 NA non-coding downstream 11497 28741896 ~ 28742566 (+)
G242576 NA non-coding downstream 32740 28763139 ~ 28763449 (+)
G242578 NA non-coding downstream 33554 28763953 ~ 28765227 (+)
G242606 NA non-coding downstream 65072 28795471 ~ 28796167 (+)
G242700 NA non-coding downstream 151025 28881424 ~ 28881637 (+)
LOC110516993 LOC106605183 other upstream 977214 27725189 ~ 27749972 (+)
LOC110516984 NA other upstream 1003146 27705985 ~ 27723794 (+)
G241150 LOC106582751 other upstream 1168408 27556172 ~ 27558532 (+)
LOC110516767 LOC106605158 other upstream 1462547 27240708 ~ 27264405 (+)
G240244 NA other upstream 1674986 27051186 ~ 27051954 (+)
G243679 LOC107756720 other downstream 937980 29668379 ~ 29690796 (+)
G244292 LOC106583212 other downstream 1402000 30132399 ~ 30137564 (+)
G244691 NA other downstream 1901371 30631770 ~ 30632533 (+)
G244851 cep85 other downstream 2135167 30865566 ~ 30874608 (+)

Expression


Co-expression Network