LOC110517244 (LOC106582991)


Basic Information

Item Value
gene id LOC110517244
gene name LOC106582991
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 28781383 ~ 28786278 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110517244
AGAAGAACTAGCGAATTTTCTTAAGTGAAAAGTGAGGTAGCGCTTCCTGTATACCCACGTGTTTTACCAAGGAAGAATTTTGAGGCATTTGCATCTTGGCTTTGTAGTTAGCCAGAcagttgattgatttatttatttattgattgattgattttttttttacttaaaaaaatgTCAATATGTCATCGTTTAGAAAGGCATTGAAGTcccaacaaaaaaaatcacaagAAAGATCCCAGCCTGGTTTTCGAAAACATCTGGGACATCTTGAAAAGAAAAAGGATTACAAACTTCGTGCAGATGACTACCACAAGAAACCGAACACCCTTGCTCCTTTGCGTAAAAAAAGCCTTGGACAAGAACCCTGATGAGTTCTATTTCAAGATGGTCAGCTCTCAGCTTAAGGATGGAGTGCATGTGTCGAATAAGGCtaaaggaacagaggaggagaataaAGAGGAAGTTGATGAGGACGCAGGATATCAGATACGTGGAGATGAAGAGCTTAAGTGTTTTGAATTGCCTTCAGAAAATTGAGGGGTTGTTATCGGAACTCCATCTCCTGGATGCTGACGGCAAACAGAAAAACGGGCACGCCTTCTACGTGGGCGCGAAGCAAAAAGTAGCAGACTTTGACCTGGCCAGCCACCTGGATACAGCCCCTGAGCTGGTGGAGAGAGTGTACAACTGGCCCACCCTCCATactgtgacgAGCAAGACCATCCAGGGCGCCGTGGAGCCTCTCAGTATAAAGGTCAGTCAGGACTACAGGAAGCACCAGTATAATATCTTGTCCCAGCGGATTGACCGGGAGAAGAAGTTTGTCATTGGTCAGAAGATCCAGACCCGCAAAGACTTACACgaTAAGAACGAGAAGGTGAAGGTGAGCAAAGAGACGGTCAATGCCTCTGCCGTCTACAAGTTTGAAGCTAAGAGAAAGCGATGAGAAAGGTAAACCTCTTTGAACAGGAAACGCATCATCAACCAGACAGTTCTGTGGCCTGTTATACAATCACCAGTCGGTCTCCATCGGACAGTAATgtgaactttggttttcctattGCAATTCATGTGAATATGGACTAGTGAAATGGTCAGGGAATACCCTCTCAATTGTTGTTGGAGGCATAGATTGATCTCTATGGTTGCAGCAATGCAGAGTTTTTGTACATATTTATCAAAGGATATAAGTTAGATTTTTTATGAATAAATTGTTTTGAGACCAA
>TU277106
tgttttgtagcctgagagagtttacccaggatcggatccactctttgcgtccgtggactactCCTCTCCattcttcgtggcctttctccgctggagatctgttggcggattggattgtctgactgaccgactgactaccaccttttttgtatacgAAGTTGGCCAGACAGGAAGCACCAGTATAATATCTTGTCCCAGCGGATTGACCGGGAGAAGAAGTTTGTCATTGGTCAGAAGATCCAGACCCGCAAAGACTTACACgaTAAGAACGAGAAGGTGAAGGTGAGCAAAGAGACGGTCAATGCCTCTGCCGTCTACAAGTTTGAAGCTAAGAGAAAGCGATGAGAAAGGTAAACCTCTTTGAACAGGAAACGCATCATCAACCAGACAGTTCTGTGGCCTGTTATACAATCACCAGTCGGTCTCCATCGGACAGTAATgtgaactttggttttcctattGCAATTCATGTGAATATGGACTAGTGAAATGGTCAGGGAATACCCTCTCAATTGTTGTTGGAGGCATAGATTGATCTCTATGGTTGCAGCAATGCAGAGTTTTTGTACATATTTATCAAAGGATATAAGTTAGATTTTTTATGAATAAATTGTTTTGAGACCAATTTCTAAGCCTCAATCTTGTATATGTCTATGCCAAATGTCTTTTTTATAGGTTCATTTGAGCATTTATCAATCACATGCTGTTCAGTTATACTACCAGTAGATGGCACTAGTGTACTTCAtcaatgtacaggtaactgccaaaataatggaaacacttgagtaaatataAAGGATACGAAGTATATCGAAAGCTGGTGCttacacacaggtgt
>TU277104
tttttgaagttcttttcaatgttttaagggtttatgaaaagttgatttcccttctgacgtttacataagtcctttgtattggtgtagacttgacggaccagatgggactcattccctcccaaactaaaaggagaaaccaatgttttctctggtaggcacaacctacctggcacccctataaaaaaaataacctcaagtcaaaaccgttacaataCGCCGGAGAGCAAGACCATCCAGGGCGCCGTGGAGCCTCTCAGTATAAAGAAGTTGGCCAGACAGGAAGCACCAGTATAATATCTTGTCCCAGCGGATTGACCGGGAGAAGAAGTTTGTCATTGGTCAGAAGATCCAGACCCGCAAAGACTTACACgaTAAGAACGAGAAGGTGAAGGTGAGCAAAGAGACGGTCAATGCCTCTGCCGTCTACAAGTTTGAAGCTAAGAGAAAGCGATGAGAAAGGTAAACCTCTTTGAACAGGAAACGCATCATCAACCAGACAGTTCTGTGGCCTGTTATACAATCACCAGTCGGTCTCCATCGGACAGTAATgtgaactttggttttcctattGCAATTCATGTGAATATGGACTAGTGAAATGGTCAGGGAATACCCTCTCAATTGTTGTTGGAGGCATAGATTGATCTCTATGGTTGCAGCAATGCAGAGTTTTTGTACATATTTATCAAAGGATATAAGTTAGATTTTTTATGAATAAATTGTTTTGAGA
>TU277105
AGAAGAACTAGCGAATTTTCTTAAGTGAAAAGTGAGGTAGCGCTTCCTGTATACCCACGTGTTTTACCAAGGAAGAATTTTGAGGCATTTGCATCTTGGCTTTGTAGTTAGCCAGAcagttgattgatttatttatttattgattgattgattttttttttacttaaaaaaatgTCAATATGTCATCGTTTAGAAAGGCATTGAAGTcccaacaaaaaaaatcacaagAAAGATCCCAGCCTGGTTTTCGAAAACATCTGGGACATCTTGAAAAGAAAAAGGATTACAAACTTCGTGCAGATGACTACCACAAGAAACCGAACACCCTTGCTCCTTTGCGTAAAAAAAGCCTTGGACAAGAACCCTGATGAGTTCTATTTCAAGATGGTCAGCTCTCAGCTTAAGGATGGAGTGCATGTGTCGAATAAGGCtaaaggaacagaggaggagaataaAGAGGAAGTTGATGAGGACGCAGGATATCAGATACGTGGAGATGAAGAGTGTCTGAGGGCAAGAAAATTGAGGGGTTGTTATCGGAACTCCATCTCCTGGATGCTGACGGCAAACAGAAAAACGGGCACGCCTTCTACGTGGGCGCGAAGCAAAAAGTAGCAGACTTTGACCTGGCCAGCCACCTGGATACAGCCCCTGAGCTGGTGGAGAGAGTGTACAACTGGCCCACCCTCCATactgtgacggccctgaattattttgagccgtctcagtgcttctccttccaatagggtgctttccctttaattcccaattaaatagccagcatcagctgcgcaaaagtggcgtttgtgatggagacgtgactgaggatgtgttcccgaagcttctctattccggttgttttgttgctgttaaacgtgtgttttgtagcctgagagagtttacccaggatcggatccactctttgcgtccgtggactactCCTCTCCattcttcgtggcctttctccgctggagatctgttggcggattggattgtctgactgaccgactgactaccaccttttttgtatacgAAGTTGGCCAGACAGGAAGCACCAGTATAATATCTTGTCCCAGCGGATTGACCGGGAGAAGAAGTTTGTCATTGGTCAGAAGATCCAGACCCGCAAAGACTTACACgaTAAGAACGAGAAGGTGAAGGTGAGCAAAGAGACGGTCAATGCCTCTGCCGTCTACAAGTTTGAAGCTAAGAGAAAGCGATGAGAAAGGTAAACCTCTTTGAACAGGAAACGCATCATCAACCAGACAGTTCTGTGGCCTGTTATACAATCACCAGTCGGTCTCCATCGGACAGTAATgtgaactttggttttcctattGCAATTCATGTGAATATGGACTAGTGAAATGGTCAGGGAATACCCTCTCAATTGTTGTTGGAGGCATAGATTGATCTCTATGGTTGCAGCAATGCAGAGTTTTTGTACATATTTATCAAAGGATATAAGTTAGATTTTTTATGAATAAATTGTTTTGAGA
>TU277107
tgttttgtagcctgagagagtttacccaggatcggatccactctttgcgtccgtggactactCCTCTCCattcttcgtggcctttctccgctggagatctgttggcggattggattgtctgactgaccgactgactaccaccttttttgtatacggcacaacctacctggcacccctataaaaaaaataacctcaagtcaaaaccgttacaataCGCCGGAGAGCAAGACCATCCAGGGCGCCGTGGAGCCTCTCAGTATAAAGAAGTTGGCCAGACAGGAAGCACCAGTATAATATCTTGTCCCAGCGGATTGACCGGGAGAAGAAGTTTGTCATTGGTCAGAAGATCCAGACCCGCAAAGACTTACACgaTAAGAACGAGAAGGTGAAGGTGAGCAAAGAGACGGTCAATGCCTCTGCCGTCTACAAGTTTGAAGCTAAGAGAAAGCGATGAGAAAGGTAAACCTCTTTGAACAGGAAACGCATCATCAACCAGACAGTTCTGTGGCCTGTTATACAATCACCAGTCGGTCTCCATCGGACAGTAATgtgaactttggttttcctattGCAATTCATGTGAATATGGACTAGTGAAATGGTCAGGGAATACCCTCTCAATTGTTGTTGGAGGCATAGATTGATCTCTATGGTTGCAGCAATGCAGAGTTTTTGTACATATTTATCAAAGGATATAAGTTAGATTTTTTATGAATAAATTGTTTTGAGA

Function

NR:

description
probable U3 small nucleolar RNA-associated protein 11

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110517244 False 1226 mRNA 0.44 9 28781596 28786278
TU277106 False 838 lncRNA 0.42 3 28781383 28783460
TU277104 False 730 lncRNA 0.42 3 28781600 28782971
TU277105 False 1499 TUCP 0.44 8 28781600 28786278
TU277107 True 730 lncRNA 0.45 4 28781600 28783460

Neighbor

gene id symbol gene type direction distance location
LOC110517222 NA coding downstream 56302 28719454 ~ 28725294 (-)
LOC110517198 LOC106582967 coding downstream 427934 28343744 ~ 28353662 (-)
LOC110517114 pnrc2 coding downstream 501519 28275767 ~ 28280077 (-)
si:ch211-107n13.1 LOC106582885 coding downstream 994116 27769884 ~ 27787480 (-)
ago1 LOC106582818 coding downstream 1098679 27659143 ~ 27682917 (-)
rspo1 LOC106605132 coding upstream 105142 28891420 ~ 28921524 (-)
dnali1 dnali1 coding upstream 248650 29034928 ~ 29039438 (-)
LOC110517348 LOC106604987 coding upstream 409868 29196146 ~ 29201564 (-)
LOC110517416 LOC106605123 coding upstream 535753 29322031 ~ 29388582 (-)
stk40 LOC106583156 coding upstream 625910 29412188 ~ 29443132 (-)
G242585 NA non-coding downstream 8246 28773113 ~ 28773350 (-)
G242547 NA non-coding downstream 45208 28735882 ~ 28736388 (-)
G242367 NA non-coding downstream 176977 28604113 ~ 28604619 (-)
G242401 NA non-coding downstream 183092 28598187 ~ 28598504 (-)
G242398 NA non-coding downstream 186048 28595278 ~ 28595548 (-)
G242607 NA non-coding upstream 8723 28795001 ~ 28796190 (-)
G242657 NA non-coding upstream 43607 28829885 ~ 28833286 (-)
G242686 NA non-coding upstream 84102 28870380 ~ 28870630 (-)
G242687 NA non-coding upstream 85265 28871543 ~ 28871778 (-)
G242707 NA non-coding upstream 99191 28885469 ~ 28885674 (-)
G242539 LOC106582989 other downstream 51221 28726970 ~ 28730375 (-)
G242021 LOC106582922 other downstream 525087 28205275 ~ 28256509 (-)
G240906 NA other downstream 1596491 27184660 ~ 27185105 (-)
G242796 NA other upstream 159463 28945741 ~ 28946292 (-)
G243154 NA other upstream 346038 29132316 ~ 29152629 (-)
LOC110517486 LOC106583166 other upstream 670203 29456450 ~ 29458390 (-)
G244338 NA other upstream 1302565 30088843 ~ 30129214 (-)
G244379 NA other upstream 1387735 30174013 ~ 30177408 (-)

Expression


Co-expression Network