LOC110517255 (LOC106605133)


Basic Information

Item Value
gene id LOC110517255
gene name LOC106605133
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 28799233 ~ 28841059 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021595399.2
CCTCATAGACAGTAGAGCCGGTGAACTCTGTCACTCTTCAGCATTGTACAGTTAGAGGTCTGAGTAGGCTGCAGTGGAAAAGGAACGGGAAAAGTTGTACAGTATAATAATCTGCCCACTGGAGTAGCGACCGGTATACCGGCTGCAATTCTCATCATTTGAATGTCTGGTGACACAGCGCGAGAGGTGGGCTTCGATTGTCAAGTCGCAAAGGTGCATTCAACAGCAGATATAACGTCGGGGATGGAACAAGTCACAATGAGCGACCGGTTCGATTGCGACAACTGCAAGGAGTCCCTGTACGGACGCAAGTACATCCAGGCAGACGGGGGAGAGGGGGACAACCCCTACTGCATCCCCTGTTACGACAGCCTGTTCGCCAACACCTGCGACGAGTGCAAGGAGCTAATCGGCCATGACGCCAGGGAGCTGTTCTACGAGGACCGGCACTACCACGAGCACTGTTTCCGTTGTTTCCGCTGTGACCGCTCACTGGCGGACGAGCCCTTCACCAGCCAGGACGAGGCCCTGCTGTGCAACGACTGCTACTGCAACGAGTTCTCGTCCAAGTGTGTGGCCTGTGACAAGACTGTCATGCCAGGCACAAGGAAGTTGGAGTATGGTGGCTCCACATGGCACGAGGGCTGTTTTATCTGCCACAGCTGTGAGCAGCCCATCGGCTCTAAGTCCTTCATCCCAGACAAGGATGAACACTACTGCGTGTCCTGCTATGAGGATAAGTTCGCCCCGCGCTGCACCCGCTGCAAAAAGgcCCTGGCTAAAGGGGGTGTGACGTATCGGGATGAGCCGTGGCACAAGGAGTGCTTTGTGTGTACGGGCTGCAAGGTGCAGCTGGCAGGGCAGCACTTCACCTCGCGCGAAGACAACCCCTACTGCCTCAAGTGCTTCGGCAGCCTATACTCTAAGAAGTGTGAGGCCTGCAGCAAGCCTATCACAGGTTTTGGCGGAGGGAAGTACATCTCGTTTGAGGAGCGCCAGTGGCACCAGCCCTGCTTCACCTGCACAGagtgctctgtctctctggtggGGGCAGGCTTCTTCCCCAATGGAGACCAGATCCTGTGTCGCGAGTGCAACACCAATAGCAATctatagactacacacacacaccgtatcgCCCCTCTCCTCACACACGCCCGCCTAGTTCAACCCCAGGGCCCCCCTCATCACTGCCAAGGTTGTTAACACAGACCCACAGACTGCCtctcaggtcacacacacacacacacacacacacacacacacacacacacacacacacacacacacaccttgctcaCTAGACCACAGCTCAATCCCAAATCCTCCCCCTGTGTTTTCTGTTGCTTGCTGTCAAATACCAGAGCTAAGCATCAGGCTACTgaagcacagacacagacaaaaatCAGCGAGACTAAAGTTGATCTAACTTGGCAGAGGCATGTTTTCATGACCAAATAGACCTACATTtccttcaactgtatgtatggggTGACTTTTTGGTCAGATTATGTTTGGTTTAACAGAGGGAAAAGTAATGTCTTTGGAACTGAACCGTTCTGAACGTTAGGCGGACAATTTTAAAATGATGTACCAAAGAAATGTAATATCTGCCATCAAATAATTAACTGGTATTTGGGGGGGCGGCGGCGCCATCCATGGATCCGAAATCACCGAAGAATTGAATTCCACTATCGCTACTCCAATGTTCTGTATTAGAGGCTGTAGCATTTTAATATGTGAGGATAACACTGACCAACATGCAAATTGTCCATCGAACATAGTTCGAAATCATACTATTTTGATGTAGTTGCTATCTAGCCTGGAGAGGGGAGATCCACTCCAAGGCTTTCCTTCTCCACAGTAAGTCAtgactatgtaaaaaaaaaaaaagggttatGTGCCTTTTAAAAAAATTGCATACTTTATATGGTATGTATTATCAAACCAAAGAAAAATGCTTCCAGCTATGCAAACTTGCTAGATTTTTGTATGAACGTATCACCGCTAATCAATGAAAGCGGCACTTTGTAAAGCAGCTACAGAACACTGATATTTACTACATGTAAATGTTCGAGTGATTCAATGCTGATAATTGCAGTTTTGTGCATATGACTGTTCTCCTATGTCAATTAGGTTTCAAAGCAGTATTTGCTGTCATGCTTTAGTTGTTACTTACACTATAGCCGTATCATGATTATTTGAAGAGAATAATATGTTGCGGTCATTTGTTTATGCAGTTGTCAAACACTGCTCCAGAAAGTTAATGTCTTTATAGTATACTAAAGAATATGTCCAatagatggagaaaaaaaaaa

Function

NR:

description
four and a half LIM domains protein 3-like

GO: NA

KEGG:

id description
K24414 FHL3; four and a half LIM domains protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021595399.2 True 2318 mRNA 0.48 6 28799233 28841059

Neighbor

gene id symbol gene type direction distance location
pou3f1 LOC106582989 coding upstream 68834 28726940 ~ 28730399 (+)
LOC110504005 LOC106605136 coding upstream 432497 28352198 ~ 28366736 (+)
LOC110517184 LOC106582959 coding upstream 455772 28341344 ~ 28343461 (+)
rhbdl2 LOC106605138 coding upstream 464353 28322929 ~ 28334880 (+)
akirin1 LOC100499583 coding upstream 477914 28304190 ~ 28321319 (+)
LOC110517275 LOC106583018 coding downstream 154764 28995823 ~ 29034924 (+)
LOC110517283 LOC106583031 coding downstream 198409 29039468 ~ 29045846 (+)
si:ch211-1i11.3 LOC106583027 coding downstream 207538 29048597 ~ 29083292 (+)
map7d1a LOC106583045 coding downstream 263446 29104505 ~ 29184360 (+)
thrap3a LOC106583094 coding downstream 415276 29256335 ~ 29286477 (+)
G242606 NA non-coding upstream 3066 28795471 ~ 28796167 (+)
G242578 NA non-coding upstream 34006 28763953 ~ 28765227 (+)
G242576 NA non-coding upstream 35784 28763139 ~ 28763449 (+)
G242556 NA non-coding upstream 56667 28741896 ~ 28742566 (+)
G242453 NA non-coding upstream 78891 28667857 ~ 28720342 (+)
G242700 NA non-coding downstream 40365 28881424 ~ 28881637 (+)
G242703 NA non-coding downstream 42916 28883975 ~ 28884181 (+)
G242715 NA non-coding downstream 50545 28891604 ~ 28893051 (+)
G242731 NA non-coding downstream 72673 28913732 ~ 28914028 (+)
G242761 NA non-coding downstream 83483 28924542 ~ 28924848 (+)
LOC110516993 LOC106605183 other upstream 1049507 27725189 ~ 27749972 (+)
LOC110516984 NA other upstream 1075439 27705985 ~ 27723794 (+)
G241150 LOC106582751 other upstream 1240701 27556172 ~ 27558532 (+)
LOC110516767 LOC106605158 other upstream 1534840 27240708 ~ 27264405 (+)
G240244 NA other upstream 1747279 27051186 ~ 27051954 (+)
G243679 LOC107756720 other downstream 827320 29668379 ~ 29690796 (+)
G244292 LOC106583212 other downstream 1291340 30132399 ~ 30137564 (+)
G244691 NA other downstream 1790711 30631770 ~ 30632533 (+)
G244851 cep85 other downstream 2024507 30865566 ~ 30874608 (+)

Expression


Co-expression Network