rspo1 (LOC106605132)


Basic Information

Item Value
gene id rspo1
gene name LOC106605132
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 28891420 ~ 28921524 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021595405.2
GATGGGGTTGGACGCAAATAACCCAGGATTATGACTGACTTGTCTGAGTTGGAAGGTTTCCGACGCTTAAAAGTGGATTTATGTGGAAATTGCATTAAGAGAGTGACTTACTATCAAGAGCCTTCTTATAAATAACTGCGCTGACTGAAAGAAATAGCAAAATACATACAAACATTTTTCAGTGGATTGCATTTGAAAGATTACTTTCTCATTTTATTTGAAATGAGTTGCAGATTTTTGAATTGCCATAAATAATGCACATGGAGAGTCCAAATGTTTGATGGCAACATAAATTGCCAACTGATAAAATACAACAAAGGGAATGATTTGTCTCTCTATAATGATGATGGATCTCTTTCCCATCTCATGTGGAGGTGTCATGTAGGAGGAGTTCTTTGAAACCAAACAAGTTACGAATTTTCCCTTATAAAATAGGAAATTGAGACCCGACACCTCACTGGATCTCACCATAAGAGGTTCGCAATGCACAGcagGTCCTGGCACAGACAGATGCGTTGTCACATGTAGGAGTCTCCAGCTTTTTTTAGCAGCCCCactcctgtccctcccccaacgcCTCCTCAGAGCATCTTTAATAAGACACATGCTCCTGGGCTCGGGTGCTCATTCACACCAAACGCTCCTTGGCGATCCTCCAACAGGCTGCCTGTTCCCCTGCTAGCCCCGCCGAGTCTTCATGGGTTGAACCAACAGGAGTgccacactctcctctcctcctttttccacctctcctctcctctcatactcCACGCATCGCTCCTCCATTACATCGTCAACCgacccccccccacaccaccatTATGGCTTGTGCCCCGGGCATGCTTGGATTTGCAGCCGCAGCAGCATAATCCTCCGCTGAAGGGAGTTGTGGACACAGCagcccttagagagagagagagacagtgagagacagagagagagagcgagtgagagagagagacccagcggACAGCAGCAGCGGAGGGAGGGAAGCAGCAGGGaggagcagcaacagcagcagagtGATCCACCTGTCACAGAGTGGAAGGGGCCCCCCGCCTTATCCGTCTGCCTGCAGGGGGGACCCCGCTTGGCCGGTCAGCACCAGGGACTATGCAGCTgggactggtggctctggcgatGGTCTTTCTCGGATCCATGGGTCACAGCGACAGCGGCCTCAAGCTCTCAaagggacagaggcagagacGGATTAGCACTGAGGGGCCACCATCTTGCTCAAATGGCTGTGAGCGATGTTCCGAATACAATGGCTGTATAAAATGTAAGCCCAAACTCTTCATTCTCCTGGAGCGCAACGACATCCGCCAGATAGGCGTGTGCCTCGCCTCGTGCCCACAGGGATACTTCGGCATGCGGACTCCCGATACCAACAGATGCATCCAATGTAAAATAGAGAATTGTGAGGAGTGTTTCAATCGAAATTTTTGCACAAAATGTAAGGAGGGCTTATATTCACACAGAGGGCGATGTTACCCCAGCTGCCCTGAAGGCCTCAGCACCACCAACGGGACCATGGAGTGCGTAGAATGTGAACTGGGCGAATGGAGCCCATGGGGTCCCTGTATGAAGAAGAACAAGACGTGTGGCTTTAAGAAAGGCACACAGACCAGAGTGCAAGAGCTTCTTCAGGCCCCCAGCCCTGACACggtctctgcgtcctccccccgGCCCTGTGCTccacagactgagagacagaagTGCACAGTGCAGAAGGCACCATGTGGGAAAGGAGATGGGAATAAGAATAAGGGCGAGCGACGAGACCCgcagaggaggcaagacaaagaaAACGTCCGAGGCCATGGCCACGAGGGCAAAGAGGGTGGCAAAGAGGGTGGCAAAGAGGGTGGCAAGAAGGGGGCcaaagagggaggaaaagaaggaagcagAGAGGGTGGCAAAGAGGGCGGGAAAGGAGGCAGAGAGGGTGGCAAGGGAGGCGGCAGGAGGAAAAAGGGCCAAAACCAGGCCACCACCACGCCCAGCCTTACCCCTAGCACTGTAGCCTAGGCTTTAGTCACGCTGGGTCTTGGTGGGGACAAGGAGGGACAAAAAACTAGGCAACACCCACCTGCATTGGCCATTATtaagagacagacagtggacTGAGGTGACAATATCAAACTGATGAAGAAAAGGATTAATGCTGCTATGCATTCTAGAAGATGCTGTAAGAGAACTGGAGGATTGCTGCAATACATGAGGAACAGGACTTGGACTTATCAGActtggagggaagagggggaatgTGCACTGTGGAGGGTTCCACTGTAAGCCTTGCAGTAGGGTCAACATGTTTCATTTCACCGCTCCCAGGTTTATCTTAGAGTTGGCAGATGGAGATCCCAGTGGCTGAACAGTGGAAGACACTGAATATGAATATGAGCATTTCAAGATGGAGGCTTCACAATGATCAAGGATCTCTTCAGTCCATTAGAATCCCTGATGTGCTTTTCAAAATCTATTTTTCATTGTTGACTTGACTCATGTTTTGTGAACGGTAGCAAGTAGATATTTCTAAGGAGATGTTGTTGTAAGTGATATAAAGAAAATGAACAGTATTAAGATTCTTTATTTTAATTATATTTTTTGATGAAACAAAAGAAAGGCACTGGAACAAATGTGTGGTTTTGAAGGAAAACATATTTTAATAATTTTTTTGGTTTGAAGGGGAATCCGCTCCAAAACAAACCAGCAACAATATAGAGGAAGTTTAGATGGCTTTAGTTCAAATCCTGATCTGGTGTTAGACAAAGGTTACCCACTTAATAGCTTAGTTCTTAATTTCAAGTAGAATAATGTTTTGGTATCTTCAGCATAAAAAGTTTAGATTTGAAAACTGGGTgcgttgtgtatgtgtgttctgagtgtatgtctgcgtgtgtctgtgtgtgcattcgTGCCTGTCTGTATCTTTACAAAATTTCAGCAAAATGTTTTTGTGAAGTAGTGGTCACACAAGCCTATGTATACTTGTGTGGGTGTGGGTACATTGTATGTGTTTCTGCACGTAagcttaatgtgtgtgtgtgtacgtatcaATCTGGTAGAATGGGAAATTTGATATAGACGATGAGAGAGACCATTGTAAAGGCACAGTTATATATCAACGCATCAATATTTCCATAATCATATGGCTCTGGTTACATGTAAACCCTCGACAGCTGCTCAGTAATCATGTATGTTTGCAACAGGGTCCGACATATCTGTGTTCTGTACTATATACACCTCTGTCAGTGGAAAGAATCATTGCATTACACAGCTACTTGTCAGCCTGATACGACAAGAGCGACAAACGTTTTAGTACCATTTGTCACTAATCTTTGAGCAACCGCTGTCACGTTTTGTTTAGCTTTCCCTGGGTCTATTTGCTTTacaccaacaaaaaaaaatattagcTTCGTGAGAAGGTATACGTTAAATATGCGTTCGTATTGTGGATAGTGGTACTGAAAATGTCAACATCAGTATATCATTGGTATATCTTATTACTTCTGTGAAAGCTTGAATAAAATGCAGATGCAGTAAACATGGCAGACACACTAA
>XM_036973744.1
GATGGGGTTGGACGCAAATAACCCAGGATTATGACTGACTTGTCTGAGTTGGAAGGTTTCCGACGCTTAAAAGTGGATTTATGTGGAAATTGCATTAAGAGAGTGACTTACTATCAAGAGCCTTCTTATAAATAACTGCGCTGACTGAAAGAAATAGCAAAATACATACAAACATTTTTCAGTGGATTGCATTTGAAAGATTACTTTCTCATTTTATTTGAAATGAGTTGCAGATTTTTGAATTGCCATAAATAATGCACATGGAGAGTCCAAATGTTTGATGGCAACATAAATTGCCAACTGATAAAATACAACAAAGGGAATGATTTGTCTCTCTATAATGATGATGGATCTCTTTCCCATCTCATGTGGAGGTGTCATGTAGGAGGAGTTCTTTGAAACCAAACAAGTTACGAATTTTCCCTTATAAAATAGGAAATTGAGACCCGACACCTCACTGGATCTCACCATAAGAGGTTCGCAATGCACAGGTCCTGGCACAGACAGATGCGTTGTCACATGTAGGAGTCTCCAGCTTTTTTTAGCAGCCCCactcctgtccctcccccaacgcCTCCTCAGAGCATCTTTAATAAGACACATGCTCCTGGGCTCGGGTGCTCATTCACACCAAACGCTCCTTGGCGATCCTCCAACAGGCTGCCTGTTCCCCTGCTAGCCCCGCCGAGTCTTCATGGGTTGAACCAACAGGAGTgccacactctcctctcctcctttttccacctctcctctcctctcatactcCACGCATCGCTCCTCCATTACATCGTCAACCgacccccccccacaccaccatTATGGCTTGTGCCCCGGGCATGCTTGGATTTGCAGCCGCAGCAGCATAATCCTCCGCTGAAGGGAGTTGTGGACACAGCagcccttagagagagagagagacagtgagagacagagagagagagcgagtgagagagagagacccagcggACAGCAGCAGCGGAGGGAGGGAAGCAGCAGGGaggagcagcaacagcagcagagtGATCCACCTGTCACAGAGTGGAAGGGGCCCCCCGCCTTATCCGTCTGCCTGCAGGGGGGACCCCGCTTGGCCGGTCAGCACCAGGGACTATGCAGCTgggactggtggctctggcgatGGTCTTTCTCGGATCCATGGGTCACAGCGACAGCGGCCTCAAGCTCTCAaagggacagaggcagagacGGATTAGCACTGAGGGGCCACCATCTTGCTCAAATGGCTGTGAGCGATGTTCCGAATACAATGGCTGTATAAAATGTAAGCCCAAACTCTTCATTCTCCTGGAGCGCAACGACATCCGCCAGATAGGCGTGTGCCTCGCCTCGTGCCCACAGGGATACTTCGGCATGCGGACTCCCGATACCAACAGATGCATCCAATGTAAAATAGAGAATTGTGAGGAGTGTTTCAATCGAAATTTTTGCACAAAATGTAAGGAGGGCTTATATTCACACAGAGGGCGATGTTACCCCAGCTGCCCTGAAGGCCTCAGCACCACCAACGGGACCATGGAGTGCGTAGAATGTGAACTGGGCGAATGGAGCCCATGGGGTCCCTGTATGAAGAAGAACAAGACGTGTGGCTTTAAGAAAGGCACACAGACCAGAGTGCAAGAGCTTCTTCAGGCCCCCAGCCCTGACACggtctctgcgtcctccccccgGCCCTGTGCTccacagactgagagacagaagTGCACAGTGCAGAAGGCACCATGTGGGAAAGGAGATGGGAATAAGAATAAGGGCGAGCGACGAGACCCgcagaggaggcaagacaaagaaAACGTCCGAGGCCATGGCCACGAGGGCAAAGAGGGTGGCAAAGAGGGTGGCAAAGAGGGTGGCAAGAAGGGGGCcaaagagggaggaaaagaaggaagcagAGAGGGTGGCAAAGAGGGCGGGAAAGGAGGCAGAGAGGGTGGCAAGGGAGGCGGCAGGAGGAAAAAGGGCCAAAACCAGGCCACCACCACGCCCAGCCTTACCCCTAGCACTGTAGCCTAGGCTTTAGTCACGCTGGGTCTTGGTGGGGACAAGGAGGGACAAAAAACTAGGCAACACCCACCTGCATTGGCCATTATtaagagacagacagtggacTGAGGTGACAATATCAAACTGATGAAGAAAAGGATTAATGCTGCTATGCATTCTAGAAGATGCTGTAAGAGAACTGGAGGATTGCTGCAATACATGAGGAACAGGACTTGGACTTATCAGActtggagggaagagggggaatgTGCACTGTGGAGGGTTCCACTGTAAGCCTTGCAGTAGGGTCAACATGTTTCATTTCACCGCTCCCAGGTTTATCTTAGAGTTGGCAGATGGAGATCCCAGTGGCTGAACAGTGGAAGACACTGAATATGAATATGAGCATTTCAAGATGGAGGCTTCACAATGATCAAGGATCTCTTCAGTCCATTAGAATCCCTGATGTGCTTTTCAAAATCTATTTTTCATTGTTGACTTGACTCATGTTTTGTGAACGGTAGCAAGTAGATATTTCTAAGGAGATGTTGTTGTAAGTGATATAAAGAAAATGAACAGTATTAAGATTCTTTATTTTAATTATATTTTTTGATGAAACAAAAGAAAGGCACTGGAACAAATGTGTGGTTTTGAAGGAAAACATATTTTAATAATTTTTTTGGTTTGAAGGGGAATCCGCTCCAAAACAAACCAGCAACAATATAGAGGAAGTTTAGATGGCTTTAGTTCAAATCCTGATCTGGTGTTAGACAAAGGTTACCCACTTAATAGCTTAGTTCTTAATTTCAAGTAGAATAATGTTTTGGTATCTTCAGCATAAAAAGTTTAGATTTGAAAACTGGGTgcgttgtgtatgtgtgttctgagtgtatgtctgcgtgtgtctgtgtgtgcattcgTGCCTGTCTGTATCTTTACAAAATTTCAGCAAAATGTTTTTGTGAAGTAGTGGTCACACAAGCCTATGTATACTTGTGTGGGTGTGGGTACATTGTATGTGTTTCTGCACGTAagcttaatgtgtgtgtgtgtacgtatcaATCTGGTAGAATGGGAAATTTGATATAGACGATGAGAGAGACCATTGTAAAGGCACAGTTATATATCAACGCATCAATATTTCCATAATCATATGGCTCTGGTTACATGTAAACCCTCGACAGCTGCTCAGTAATCATGTATGTTTGCAACAGGGTCCGACATATCTGTGTTCTGTACTATATACACCTCTGTCAGTGGAAAGAATCATTGCATTACACAGCTACTTGTCAGCCTGATACGACAAGAGCGACAAACGTTTTAGTACCATTTGTCACTAATCTTTGAGCAACCGCTGTCACGTTTTGTTTAGCTTTCCCTGGGTCTATTTGCTTTacaccaacaaaaaaaaatattagcTTCGTGAGAAGGTATACGTTAAATATGCGTTCGTATTGTGGATAGTGGTACTGAAAATGTCAACATCAGTATATCATTGGTATATCTTATTACTTCTGTGAAAGCTTGAATAAAATGCAGATGCAGTAAACATGGCAGACACACTAA

Function

NR:

description
R-spondin-1-like

GO: NA

KEGG:

id description
K19471 RSPO1; R-spondin 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021595405.2 False 3570 mRNA 0.46 6 28891420 28921524
XM_036973744.1 True 3567 mRNA 0.46 6 28891420 28921524

Neighbor

gene id symbol gene type direction distance location
LOC110517244 LOC106582991 coding downstream 105142 28781383 ~ 28786278 (-)
LOC110517222 NA coding downstream 166126 28719454 ~ 28725294 (-)
LOC110517198 LOC106582967 coding downstream 537758 28343744 ~ 28353662 (-)
LOC110517114 pnrc2 coding downstream 611343 28275767 ~ 28280077 (-)
si:ch211-107n13.1 LOC106582885 coding downstream 1103940 27769884 ~ 27787480 (-)
dnali1 dnali1 coding upstream 113404 29034928 ~ 29039438 (-)
LOC110517348 LOC106604987 coding upstream 274622 29196146 ~ 29201564 (-)
LOC110517416 LOC106605123 coding upstream 400507 29322031 ~ 29388582 (-)
stk40 LOC106583156 coding upstream 490664 29412188 ~ 29443132 (-)
oscp1b LOC106583166 coding upstream 525495 29447019 ~ 29456324 (-)
G242707 NA non-coding downstream 5746 28885469 ~ 28885674 (-)
G242687 NA non-coding downstream 19642 28871543 ~ 28871778 (-)
G242686 NA non-coding downstream 20790 28870380 ~ 28870630 (-)
G242657 NA non-coding downstream 58134 28829885 ~ 28833286 (-)
G242607 NA non-coding downstream 95230 28795001 ~ 28796190 (-)
G242756 NA non-coding upstream 779 28922303 ~ 28922506 (-)
G242757 NA non-coding upstream 1413 28922937 ~ 28923157 (-)
G242784 NA non-coding upstream 16808 28938332 ~ 28938663 (-)
G242793 NA non-coding upstream 20914 28942438 ~ 28942683 (-)
G242797 NA non-coding upstream 25285 28946809 ~ 28947009 (-)
G242539 LOC106582989 other downstream 161045 28726970 ~ 28730375 (-)
G242021 LOC106582922 other downstream 634911 28205275 ~ 28256509 (-)
G242796 NA other upstream 24217 28945741 ~ 28946292 (-)
G243154 NA other upstream 210792 29132316 ~ 29152629 (-)
LOC110517486 LOC106583166 other upstream 534957 29456450 ~ 29458390 (-)
G244338 NA other upstream 1167319 30088843 ~ 30129214 (-)
G244379 NA other upstream 1252489 30174013 ~ 30177408 (-)

Expression


Co-expression Network