LOC110517348 (LOC106604987)


Basic Information

Item Value
gene id LOC110517348
gene name LOC106604987
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 29196146 ~ 29201564 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021595453.2
GGAGAGTGAAGGCACTATCACAGACCCAAAATCAGTGGTGGAGATGTGGGTCGGCAACTTGCTGTGTCAGGCCGCTCTGGTTGTAGCCCTCTCCTTACCTACCTTATCTGATGGAGCTGCTCTACAAGTGTTGTCAGCTCCTAACCTGCTTCGTGTTGGCAGTAATGAGAACATCTTTGTGGAGTCTCAAGACCATACAGGAGGTCCCCTGAATGTTAAGATCATGGTGAAAAACCACCCTACGCAGAGCAAAGAGCTGGTCTCTAAATTAGTGGTTCTGGATCAAGCAAACAGCTTTCAGGCTATGACACAACTGGTCATCCCAGAGGGGGACCACTTTGTGGATGACCCCAAGCAGAAGCAGTATGTGGTCCTGCAGGCCCAGTTCCCTGACCGCCTCCTGGAGAAGGTTGTCCTGGTCTCCTTCCAGTCTGGATACATCTTCATCCAGACTGACAAGACCATTTACACACCGGCCAGCCCCGTCTACTACAGAGTGTTCTCTATGACTCCTGGCCTGGAGCCTCTGACCAGGGAGATATTTGAGGACAAAGAAGTTGCCAAGAACAAAGAGATCGCAGTCTCTGTGGAGATCATGACTCCTGAAAACATCACCATCTTCAGGGAGATCGTCAACCCAGATAAGGGAGTCAAATCTGGACAGTTCATTCTCCCTGCGATCGTCAGTTTCGGGACATGGCATGTGGTCACGAGGTTCCAAAGCACTCCTCAGATGACCTTCTCATCTGACTTTGAGGTCAAGGAGTATGTTCTGCCCAGCTTCGAAGTTAGTCTGACCCCAGGTAAAGCCTTCTTCTACATCGACGACAAAGACTTGACCGTTGACATCACTGCCAGGTATCTATATGGTAAGGAAGTGACAGGGACAGGCTATGTGGTGTTTGGTGTCATCACAACAGAGAATGAAAAAAAGAGCTTCCCCGCCTCTCTGCAGAGAGTAGAGATCAGAGAAGGTAAAGGAGTGGCTTGTCTGAAAAAGGAACACATCACACAGACTTTCGAAAACATCCATAATCTGGTCAAACAATCCATATTTGTATCAGTCAGCGTGTTAACAGAGGGTGGGGGTGAGATGGTAgaggcagagaagagagggatccaGATCGTCACTTCGCCATACACCATCCTCTTCAAGAGAACTCCCAAATACTTCAAACCTGGCATGCCCTTTGATGTCTCGGTTTACATTACGAATCCCGACAACTCTCCAGCCAATGGAGTGGAGATTGAGGTGGCTCCAGATAATGCTAAAGGGGTGACCAGGGCTAATGGCTTTGCCAAAGTTACAATTAACACCATGGCATCAGCCAAAGAGCTGCCAATCACTGTGAAGACCAAGGTCCGGGGTATCCTCCACACCAGACAGGCGGAGGCCACCATGAAGGCTCTCCCCTACAGGACTTCCACCGGGAACTTCCTCCATGTTGGGGTTGACTCTAATGAGCTGAAAATAGGAGACCCCATTAAGATCAATCTGAACCTGGGACCCCTCACCATACAAAACCATGACCTTACATACATGTTCCTGAGTAGAGGTCAGCTGGTGAAAGTGGGCAGATTCAGAAGACAGGGCAATgcgctggtgacactgtcagtgccCGTCTCCAAGGAAATGCTTCCGTCGTTCCGCATCATAGCGTATTACCATGTGGGAACAGATGACCTGGTGGCAGACTCTGTCTGGGTTGACGTCAAGGTCTCTTGCATGGGCTCGCTGAAAGTGACGTCGACCAGGCCCAAGGCATTCTATGAGCCTCGTAAGGCTTTCAGTCTGACCATCACTGGAGACCCGGGAGCTAAAGTAGGACTGGTGGCTGTTGACAAGGGAGTCTACGTTCTCAACAACAAACACCGTCTCACACAGACCAAGATCTGGGACACCATAGAGAAGCATGATACAGGATGTACAGCTGGAGGGGGAGCAGACAATATGGGGGTGTTCTACGATGCTGGTCTGGTATTTGAGACCAACACCGCTAAAGGGACTGGGATCAGAACAGACCCCAGCTGTCCTGTTAGTTCCAGGCGGAGACGAGCAGTGACAATCAGTGACGTCATCACTACTATGGCCAGTAAGTACAATGGTCTGGCCAAGGAGTGTTGTGTGGACGGGATGAGGGACAACACCATGATGTACACCTGTGACAGACGGGCCCAGTACATCATAGATGGGGATGTCTGCATCCAAGCCTTCCTCGTCTGCTGCAATGAGATGGCCACAAAAAAGGATGAATTCAAACAGGATGCACTGCTGCTCTCACGCagtgaagaggaggatgatgatgctTTCATGCGGTCTGAAGACATTGTGTCTCGTAGTCAGTTCCCTGAGAGCTGGATGTGGGAAGATACCAATCTTCCTGAATGCACCGCCCAAGATAAGCACTGCGAGACCAcgtctataacaaagaacaactTCCTGAAAGATTCCATCACAACCTGGCAGATAACAGCCATCAGCCTGTCTAAAACTCATAGCATCTGTGTGGCAGATCCGTTTGAGATGATAGTTCTAAAGGATTTCTTTATTGACCTAAAGCTGCCCTACTCAGCTGTCCGCAACGAACAGCTGGAGGTCAAAGCAATCCTCCACAACTACAGCGAAGACCCCATCACTGTGCGTGTTGAGCTGATGGAGAATGGCGAGGTGTGCAGCTCGGCAAGCAAGAAGGGTAAGTACAGGCAGGAAGTGAACATGGACGCCATGTCCACCCGGGTTGTCCCCTATGTCATCATCCCTATGAAGCTGGGCCTGCACTCCATTGAGGTCAAGGCATCAGTGAAAAACTCTGGCAGCAATGACGGTGTGAAGAGGGACCTGCGCGTTGTGGCTGAGGGAGTGCTGGTCAAGAAGGAAAACAACGTACACCTGAACCCGGTTAAACATGGTGGTGTGCAGACGGCACACATACCCAGTGGAGTGCCTCGGAACCAGGTGCCAAACTCTGATGCTGACACACTGATCAGTGTGACAGGTGGAGAGCAGACCAGTGTGCTGGTGGAGCAGGCCATCAGTGGAGACTCTCTGGGCAATCTGATAGTTCAGCCAGTCGGATGTGGGGAACAGAACATGATCTACATGACCCTGCCTGTCATTGCTACACACTACTTGGACAACACCAAAAAGTGGGAGGATATTGGCCTGGACAGAAGGAACACAGCCATCAAGTACATCAACATTGGTTACCAACGTGAGCTGGCCTACCGTAAAGAAGATGGCTCCTACGCTGCCTGGATCCACACAAAGAGCAGCACCTGGCTGACAGCGTATGTAGTCAAGGTGTTTGCCATGTCCAGTACATTGATCAGTGTTCAGGAAAATGTGCTATGTAGTGCTGTCAAGTGGCTGATCTTGAACACACAACAGCCAGACGGCATCTTCAATGAGTTTGCTCCTGTCTACCACTCAGAGATGACGGGTAACGTGAGGGGTTCGGACAGTGATGCATCTATGACAGCCTTTGTTCTCATCGCCATGCAGGAAGCAAGCTCACTGTGTGAGAAGTCTGTCAACAGCCTACCAGGCAGTATGGATAAGGCAGTAGTGTACCTCGAGAAGCGTCTTCCGCACCTCACAAACCCCTATGCTGTAGCTATGACTTCCTATGCTCTGGCcaatgcagggaaactcaaaaAGGAGACCCTACTGAAGTTTGCCTCTCCACAGCTGGACCACTGGCCAGTCCCAGGTGGTCACCAGTACACGCTGGAGGCCACTTCGTATGCCCTGCTTGCCCTGGTCAAGGTGAAGGCCTTCGAAGAGGCCGGCCCAATAGTCAGGTGGCTTAACAATCAGAAGAAAGTGGGAGGGGGATACGGATCCACACAGTCCACCATCATGGTGTTCCAGGCTGTGGCTGAGTATTGGAGCAACGTGAAGGACCTGAAAGACATTGACTTGAACATCAACCTAGAGGTGGCCGGCAGGGCATCAGTTACCAAGTGGTCCATCAACAACAAGAACCAGTTCCACACTCGTACAGACAAGGTCAACTCCATAGACAAGGACTTGACAGTAAAAGCCTCAGGAAATGGTGAGGCGACCTTGTCGGTGGTGACACTGTACTATGCCCTGCCAGAAGAGAAGGCCAGTGACTGTGAAAACTTTAACCTCTATGTCCTCCTCACTAAGATGGACAAAACAAGCCACGAGGATGCCATGGAGTCGTTTATGCTCACTGTTGAGGTGTTGTATCGTAACTCAGAGAGAGATGCGACCATGTCTATCCTGGACATCGGCTTGCTGACCGGCTTCATCGTAGACATAGGTGATCTGAAAAGGTTGTCCAAGGGGAGGGAGCGCTACATAGAGAAGTTTGAGATGGACAAAGTTCTGTCTGAAAGAGGATCTCTCATTCTCTATTTGGACAAGGTGTCCCATAAGTTAGCAGACAGAATATCCTTCAAGATTCACAGAGTACAGGAAGTAGGAGTTCTACAGCCTGCTGCCATCTCTGTATACGAATACTACAACCAAAAGCACTGTGTCAAGTTCTACCACCCACAGAGGGAGGGTGGAACTCTGAGCAGACTGTGTCTTGGAGACGTGTGCACGTGTGCTGAAGAGAGCTGCAGTATGCAGAAGAAAGATGAGCCTGATGTCAACCGCATAGACAAAGCCTGCGGAGCGGGACTGGATTATGTTTACAAAGCTACGGTGGTGCACTCTAAGCTGACGACACACGCAGATACATACACCATGAAGATCGATGACGTCGTCAAGCCAGGTACTGATGAGGTAATAGCGGGAAGGAATCGTGACTTCATGGGACTATCTTACTGTAGAGAGGCTCTGGGTCTAAAGCAGGGGAAAACATACATGATTATGGGGAAGTCTGAAGACCTGCACAGAGTGGAGGAAAATGGACTGTTGCAGTACAAGTATGTCCTAGGAGAACAGACATGGATAGAGTACTGGCCCTCACAACAAGAGTGCACGTCCAGAGACTACAGAATAGTCTGTCTGGGCATCGATGAGTTCATTAACCAGATCACAACGTTCGGCTGCCCTGTTTAGTTTCTCTTCTTGTTTTgttaaatttacatttgtgtaacATTTCAATCCAGGTTGCATGCCCTGTCATAACTCATTGTAACCTTGAGAGTGTATGACGATGAGTTTGACCACTTTGAATATATTCTGAAGCTGACCCGTAAATGATGTACACTGTGCACAATAAAGCTGTTTGggaaataaaatgaaaaaaagtTAACCTATGATGATGACGACTGCAAATGGCACACTTACACTTCCATTTATATGTGCCATTTGCAGTCATCATCGTCATAGATTACTATGCCATAGCTACATTTTCTATGCCTTTATTTTAGCACTAAAATTATCCCTGCCTGCTATAATAAGCATGAAAGAAATGCATAAAAAAAACGTTGTCTCATT

Function

NR:

description
complement C3-like

GO:

id name namespace
GO:0006954 inflammatory response biological_process
GO:0006957 complement activation, alternative pathway biological_process
GO:0006958 complement activation, classical pathway biological_process
GO:0010951 negative regulation of endopeptidase activity biological_process
GO:0005615 extracellular space cellular_component
GO:0004866 endopeptidase inhibitor activity molecular_function

KEGG:

id description
K03990 C3; complement component 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021595453.2 True 5419 mRNA 0.49 1 29196146 29201564

Neighbor

gene id symbol gene type direction distance location
dnali1 dnali1 coding downstream 156708 29034928 ~ 29039438 (-)
rspo1 LOC106605132 coding downstream 274622 28891420 ~ 28921524 (-)
LOC110517244 LOC106582991 coding downstream 409868 28781383 ~ 28786278 (-)
LOC110517222 NA coding downstream 470852 28719454 ~ 28725294 (-)
LOC110517198 LOC106582967 coding downstream 842484 28343744 ~ 28353662 (-)
LOC110517416 LOC106605123 coding upstream 120467 29322031 ~ 29388582 (-)
stk40 LOC106583156 coding upstream 210624 29412188 ~ 29443132 (-)
oscp1b LOC106583166 coding upstream 245455 29447019 ~ 29456324 (-)
LOC110517486 LOC106583166 coding upstream 254886 29456450 ~ 29458390 (-)
mrps15 LOC106583175 coding upstream 256966 29458530 ~ 29463042 (-)
G243173 NA non-coding downstream 646 29193301 ~ 29195500 (-)
G243180 NA non-coding downstream 6638 29189223 ~ 29189508 (-)
G243144 NA non-coding downstream 84240 29111700 ~ 29111906 (-)
G243137 NA non-coding downstream 92051 29103850 ~ 29104095 (-)
G243132 NA non-coding downstream 106167 29089482 ~ 29089979 (-)
G243257 NA non-coding upstream 82287 29283851 ~ 29286468 (-)
G243309 NA non-coding upstream 166423 29367987 ~ 29368444 (-)
G243322 NA non-coding upstream 180062 29381626 ~ 29386695 (-)
G243330 NA non-coding upstream 189024 29390588 ~ 29390843 (-)
G243154 NA other downstream 43517 29132316 ~ 29152629 (-)
G242796 NA other downstream 249854 28945741 ~ 28946292 (-)
G242539 LOC106582989 other downstream 465771 28726970 ~ 28730375 (-)
G244338 NA other upstream 887279 30088843 ~ 30129214 (-)
G244379 NA other upstream 972449 30174013 ~ 30177408 (-)
G244381 LOC106583245 other upstream 997668 30199232 ~ 30199770 (-)
G244393 LOC106583245 other upstream 1010006 30211570 ~ 30217682 (-)

Expression


Co-expression Network