stk40 (LOC106583156)


Basic Information

Item Value
gene id stk40
gene name LOC106583156
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 29412188 ~ 29443132 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021595514.2
TTGTCAGGTGGCGCTGCTATGGAAAGATGCGATCAGAAAGCTGACGAATGGAAGCTGTTGCTGAGTGGTCATTTCGGTAATAGTGGCTAAAACAAACATAGCGCGATATCAATCCTCCATATACGGTCTCCTTTCGTTGGGGATAACCAACTGCGTATGCACCGAACAAATACGTTTAAAGAAATGTTCATGCTGTAGTAATACAACGCAGACTTTCCTCGGCGTTTTCAGCTCGAGAGCTCCAGCATGTCTAAGCGGCGCTCTTTGGAGAGGGGGGCCGGAGAGACTTCAGGCAGGGCCAGCAAGCTCCTCTGTCCTGGAATTGCTGGAAGCAACGCGAAGAGGGCAGGTCCCTTCATCCTGGGGCCTCGTTTGGGGAACTCGCCCGTGCCAAGTATAGTGCAGTGTCTGGCCAGGAAGGATGGGACGGATGACTTCTACCAGCTAAAAATCCTGACGCTGGAGGAGCGGGCAGACGCGGCCGCAGAGACCCAGGAAGAGAGGCAGGGGAAGATGCTGCTGCACACCGAGTACTCCCTCCTCTCGCTGCTCCATAACCAGGACGGAGTGGTGCACCACCATGGCCTGTTCCAGGACCGGGCGTACGAGATTGTGGAGGACCCGGAGGCCAACAATGGCAAGGTACGCCGGATGAAGAAGCGGATCTGCCTAGTGCTGGACTGCCTCTGTGCGCACGATTTCAGCGACAAGACTGCAGACCTCATCAACCTGCAGCACTACGTCATCAAGGAGAAGCGGCTGAGCGAGCGCGAGGCCATCGTCATCTTCTACGACGTGGTGCGTGTGGTGGAGGCCCTGCACAAGAAAAACATTGTGCACCGAGACCTGAAGCTTGGAAACATGGTGCTGAACAAACGGACTCACCGGATTACCATCACCAACTTCTGCCTGGGCAAGCACCTGGTGAGCGAGGACGACCTGCTGAAGGACCAGCGAGGAAGTCCAGCCTACATCAGCCCTGACGTACTGAGTGGCCGGCCGTACCACGGTAAGCCCAGTGACATGTGGGCCCTTGGCGTGGTGCTGTTCACCATGCTCTACGGCCAGTTCCCCTTCTACGACAGCATACCTCAGGAGCTATTCCGCAAGATCAAGGCTGCAGAGTACTCCATCCCAGAggACGGGCGTGTGTCGGAGAACACTGTGTGTCTTATACGGAAGCTGCTGGTGCTGGACCCCCAGCAGAGGCTAACCGCTGCCGAGGTCCTGGAGTCTCTCAGTGGCATTATTGCCTCATGGCAGTCAGTATCCTCTTTGACCGGACCTCTTCAGGTTGTACCGGACATTGATGACCAGGTCAGCCACCCAGAGCATCTCCAGGAGgTGAAAATGACAGAGGAGTCGTCGCAGTACGAGTTTGAGAACTACATGCGCCAGCAGTTGCTTCTGGCCGAGGAGAAGAACACTATTCACGAGGCCAAAGCCAGCTTCCTCACCAAGCGCCAGTTCGGCGCCATCCCGCCCGTGCGGCGCCTGGGCCACGATGCCACGCCCGTCAGCCCTCTGGACGCTGCCATCCTGGCCCAGCGCTTTCTCCGGAAGTAGCCCCTTCATTCATCGCCTTGACAAGTGGCGTGAGGGACACAAGGGTTGGGTCGGGAAGGTACCCTAAAACTGCCCCAGCTCGACCCTCCCTTGGGTAGAGAGGCCCCTAGCTGTGGTAAGTTAGGTGGTGTGGGAACAGGCATGCGGGGAGGGGGCACCAGAACTGATCACTCGCCTGACAACCTCTCATAGTTTTCACACGTCAAGTCTGGGTGTTGGCAGTGTGCACAGGAATGGCAAGGCTGGAGAATCTGAAGATCTGAACCAAAGGCTCCCACTGACCCCtcccaccccccaccaccaccactgatcTTAAACACACGGTTCTCTCAGCCAGCAATGGGCACATATGGAGTCTTGCAGGCCAGGGGGATACCAgacatggttgtgtgtgtgtgtttggacatGAAAAGCTCCCCCATTGTTTCCCTCTGCTGAGACCTGGCCATCACCCTCCTACCTACCCCCATTTCTTATTGAAAACCCTGAGCAATACAGGGCCAAAAGAATCATGTAGCAAACTTcctctaacctccctccctcaacTCTCCAAACTGGGATCACTTGATCATGGACATCACTCACGTGCCCGCCCGCTCCACTCTTTAGTTTCCTCATAACCAAAATTATCTGGACTAGTCCTGTCTCTAAACTACGACTTCAAATCTACCTCTCTCaatcttttattttttaattttttttttcatgtgtCAATTTTTCACCATGTCCACCATTCTCAAAAAACAAGGAATTGTCGGTAGTGTTGTCACCGTAGACAGAAAGCATTACTATGTTTTGGCACGTAAAGGTTTGGAATGTGGAATATGAATAAGCTTTTTTCCTTATGAATAATAAGTAGCGTTTTACCCATCTTACATTGAAGATGCTAACTATCAAAGGGTGGCCAAATCGCCTACTTCTGTCTGTACGTCTAGCCAATTGCTTTGCTTTCTTGCTTTCGCTCACCCCCTGTGGAACTTTTTCCATTTAGGCATCTAGTGTCAAATACCTGGAGGTTGTGACACCGAGAGCTGGATGGGGGATGTTTTATTAGATGTTTAAGGTTGATCCTCTCTCGTTATTGCTGTTCTAATTGGCATCTTTGATTTATTAATCACGACGTGGACGCTATAATTTTCTGGGGGGTGATAAATCATGTAGAGTCTTAACTGATTGTTAGCCAAGGAAATGATACCTCCCCCTCGTTCACCACTGAACAACTTCCAGGTATTCAACTTCCCATTTATCCTGTGTGACATCATCATTGTGGGACAAGTATTGGGCATGAATGTGAATGATTGGTATTGTCAGTGTGTAGATAAGTGTGATTTGGGCCAGGGGGCTGTATTAGACAAAGCCATGTCCTTTTCAGTGGTAGGTGTTGACTAGAGCCAAGTTATTTAAGCCCAGTGAGTCAGTGCACACCCTTAAACTAGCCATCCTCTCAATCTCTTTATCTTGCCTGCCTCAGTTGCTTGCACACACTGAGAATATAGGCTTTTCTAAGACTGTCTGGACTGAATGTGTCCGCTATGAAAGATGGGCATCCCTCATGTTGGCCCTGTCTTAGTCGTGAATCCTCTAGTGCGTAGCAATGTCTTAAGTTTAAAATCAAACAAAACTGTAATGATCACAGTAGCTCTCAAGCTCTTTTTGCTGTTTGTAAGTGATATTGTAGTAGCTGATCATGAAAGACTTACTATGATGTTGATAATGATAATTTCATAGTGTGATATTTCAGAGAAACTCGACAATGAGGTTGCGTCTCCATCACTCGGCCATGCCATTGTTATGCACTTTCTCAAGCCTCCCTCTGCTGGCGGTGCCATAGTGGTGCCAAACGTCATGATCAATCCAATCTTTCTCCACAGAGGCAAACGGCTGTTTTGTCTAAATTACACCAGTGTCctggaaatacaatgacattgctaaagtaggtagatatttagtaggaaacaactttgccGTCAAATTTACTATAGGCAGATGGCAATGTCATAAGTTAACAAAGTTTGTCAGGTCCTAGCTATGTTGCTAAGCTACTAACTTGTGAACGATATTAGGCATCTGTTCACATAGGCTTGCCCATCTTTATGGGTATCCGCATTGCTTAGACCTTCACcctatttttatatccaaattgATCACATGAGTAGAAACTCGAGTCAGTTTCCTCCTATTTCTTTGTATATTGTCTTTTTCCTCAATTTCATGTTTGTTGATTTTGTTATTTATTCACTGTCCATTTTCAGGCATCAAATATCTGCCATTTAGCTTTAAGCAAGAAGTCTTCTGGTTCCATTTGTTTCTCCAAACATTCAAACTTGAGCCACCATtgcagttttttttctctctaaagatctttttattattttttaccattGCCACACTCGTGGTCAATTTAAGCTACACTACTAATAATGAGACTGACTGCATAGTTCTATTTTTTACACAGAAAATAATCGCACATTATAATGATTTATGGTAGTGATGTTTATTAGCCTGGTCACagttctgtttgtgctgtcttgccaactgtTGCCTTGACAGTGACAAACAGATATGGGACCAGGCCAACTGTTTATTGCCCCATACCAGACTTTTGGTCAGTATGTAAATATAATACCATCATGGCAGCGACAACACCAGTAGAGCTTCCATCTAGTGGAACGAATCCAGCTCTGATCAGGGGTACATTCATTGAGGTGAAATGTTGCAGATAGGAATGTGTTGAATAGAACTGACAAGATTTCCTGTCATGTTGAATTCAGAATCATATCTTAATTTCTGTCTGAAAGTTTTGTAACATTGCACACTCCTGAACAGCCCGCTGTAACACAAATTATATATAGACATGCATTAGAGGCAGTAAGTACTAGCCACCCCATTTGaatgaaaaaatatttatattcgaTTTTGAGGAATGtacgctcccccccccccccccccccccccacctcaatGTGAATTTCTGGGTATAAAAGCAGTATTGTAGTTGATAGTGTCAGTAGTTCATGAGAAAAGGGTATTTTGTGAACACCACAGCCCTTGCTGAAGTTGAAGGCAAATTTCTCATCCCATCTTACTTGAGGGTGACCATAACCCACTATTGGATATAAATATGTAGGTTTATTGGATAAGACCCTTGATAGTAATGTATTATCTGTAGCATTATCAAGATAGTGTTCACATTTAGCTGTTGGAATTGTCCCATTTGTCTATGAAAGTTGTCTCCTTCAGACGGTCTGTGGACTGAAAGCACCATACGAAGCATGATGTTGAGCTCTTTGTAAAATGCGATTTTTGCATGAATTTTTTACTTGCAAGGTGGTCCCACAATATAATTCCCTGTAATCCACCAACTGAGAAGAATTGGGAATTTGAGTCATAAGGAAAAACCTAATGTTTTTCATAATACAACTGATTTTCATTTAATGAACATTCAACAATTTTTCATTTTTACCATAATTCTCAAATGGAGGAAATGTCTGTCAGTTTAATGATGTATTTGATTTGCTGAATATTTGAACTGGAAAATAGATAATGGTGTATGATATGTGGTGGTAAAAATGGTTGAAAACCAGCAGGATTTGTTGTAAGCTGCTTGGTTGGATATGGGCATCTAATACAAAAACCTGGCTAATTGTACAGAGATGGAAGAAAATTAAAAAAGTTTgtataaaatacattatttttgtACTTCATCAAATCTCTACATGCATGTCAGCAATAAACTTTGATATGGAAAAATTCTC
>TU278068
tcaatGTGAATTTCTGGGTATAAAAGCAGTATTGTAGTTGATAGTGTCAGTAGTTCATGAGAAAAGGGTATTTTGTGAACACCACAGCCCTTGCTGAAGTTGAAGGCAAATTTCTCATCCCATCTTACTTGAGGGTGACCATAACCCACTATTGGATATAAATATGTAGGTTTATTGGATAAGACCCTTGATAGTAATGTATTATCTGTAGCATTATCAAGATAGTGTTCACATTTAGCTGTTGGAATTGTCCCATTTGTCTATGAAAGTTGTCTCCTTCAGACGGTCTGTGGACTGAAAGCACCATACGAAGCATGATGTTGAGCTCTTTGTAAAATGCGATTTTTGCATGAATTTTTTACTTGCAAGGTGGTCCCACAATATAATTCCCTGTAATCCACCAACTGAGAAGAATTGGGAATTTGAGTCATAAGGAAAAACCTAATGTTTTTCATAATACAACTGATTTTCATTTAATGAACATTCAACAATTTTTCATTTTTACCATAATTCTCAAATGGAGGAAATGTCTGTCAGTTTAATGATGTATTTGATTTGCTGAATATTTGAACTGGAAAATAGATAATGGTGTATGATATGTGGTGGTAAAAATGGTTGAAAACCAGCAGGATTTGTTGTAAGCTGCTTGGTTGGATATGGGCATCTAATACAAAAACCTGGCTAATTGTACAGAGATGGAAGAAAATTAAAAAAGTTTgtataaaatacattatttttgtACTTCATCAAATCTCTACATGCATGTCAGCAATAAACTTTGATATGGA

Function

NR:

description
PREDICTED: serine/threonine-protein kinase 40

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021595514.2 False 5321 mRNA 0.46 11 29412188 29443132
TU278068 True 788 lncRNA 0.34 1 29412197 29412984

Neighbor

gene id symbol gene type direction distance location
LOC110517416 LOC106605123 coding downstream 23606 29322031 ~ 29388582 (-)
LOC110517348 LOC106604987 coding downstream 210624 29196146 ~ 29201564 (-)
dnali1 dnali1 coding downstream 372750 29034928 ~ 29039438 (-)
rspo1 LOC106605132 coding downstream 490664 28891420 ~ 28921524 (-)
LOC110517244 LOC106582991 coding downstream 625910 28781383 ~ 28786278 (-)
oscp1b LOC106583166 coding upstream 3887 29447019 ~ 29456324 (-)
LOC110517486 LOC106583166 coding upstream 13318 29456450 ~ 29458390 (-)
mrps15 LOC106583175 coding upstream 15398 29458530 ~ 29463042 (-)
csf3r csf3r coding upstream 33124 29476256 ~ 29487478 (-)
LOC110517512 LOC106605177 coding upstream 52133 29495265 ~ 29496880 (-)
G243330 NA non-coding downstream 21345 29390588 ~ 29390843 (-)
G243322 NA non-coding downstream 25493 29381626 ~ 29386695 (-)
G243309 NA non-coding downstream 43744 29367987 ~ 29368444 (-)
G243257 NA non-coding downstream 125720 29283851 ~ 29286468 (-)
G243173 NA non-coding downstream 216688 29193301 ~ 29195500 (-)
G243568 NA non-coding upstream 85259 29528391 ~ 29528626 (-)
G243678 NA non-coding upstream 223531 29666663 ~ 29666899 (-)
G243928 NA non-coding upstream 303649 29746781 ~ 29748615 (-)
G244069 NA non-coding upstream 504801 29947933 ~ 29948274 (-)
G244091 NA non-coding upstream 528620 29971752 ~ 29972079 (-)
G243154 NA other downstream 259559 29132316 ~ 29152629 (-)
G242796 NA other downstream 465896 28945741 ~ 28946292 (-)
G242539 LOC106582989 other downstream 681813 28726970 ~ 28730375 (-)
LOC110517222 NA other downstream 686985 28719454 ~ 28725294 (-)
G244338 NA other upstream 645711 30088843 ~ 30129214 (-)
G244379 NA other upstream 730881 30174013 ~ 30177408 (-)
G244381 LOC106583245 other upstream 756100 30199232 ~ 30199770 (-)
G244393 LOC106583245 other upstream 768438 30211570 ~ 30217682 (-)

Expression


Co-expression Network