oscp1b (LOC106583166)


Basic Information

Item Value
gene id oscp1b
gene name LOC106583166
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 29447019 ~ 29456324 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021595520.2
TTTgcacaaaacataaaacatattTGCACGTTAGCTTGCGTGCTACCTGATTGGTCCTTTTTCTTTGTGACCTGGCAACCAAGTGGACGCTTACATACGCTTAAACAAGGCAGAAGGGACATttcgctagctagctatccaGCACAATACGACAAATATGTCTTCGAGGACGCTACCCCTGCTTTTTATTAATCTCGGTGGAGAAATGCTCTACATCTTGGATCAACGCCTAAGAGCTCAGAATATTCCCGCTGACAAAGCCAAGAAAGTTATGAATGACATCATCACCACCATGTTCAATAAAAAGTTTTTGGAGGAGCTGTTCAAACCACAGGAGCTGTACTCCAAGAAGGCCCTCAGGACGGTGTTTGACCGACTGGCCCACGCCTCCATCATGAGACTCAACCAGGCCAGCATGGACAAGCTGTATGACTTGATGACGATGGCCTTCAAGTACCAGGTGCTCCTCTGCCCGCGGGCCAAAGATATCCTCCTTGTGTCCTTCAACCATATGGATGCCATCAAGGATTTTGTGAAGGACACCCCAAGCGTTCTCAGCCAGGTTGACGAGACATACAGACAGCTCATAGAGATGTACACACCCTTGTCTAGTGGTGAATTTCAGCTCATCCGGCAAACGCTCCTCATCTTCTTTCAAGACATGCACATAAGGGTGTCCATCTTCCTCAAAGACAAAGTGCAGAATTCCAATGGACGTTTTGTCCTCCCGATCTCGGGTCCTGTGCCCCACGGAACACACATCCCAGGACTTATCAGAATGTTCAGCTGCAATGGCGAAGAGGTGAAGAGACTGCAGTTCCGCAACGGTGGGAACTACACCAGTGTTCTCCGCGAGGGTTCCTTTGAGATGTTTGGAGAGCGGGTCATCAAGCTGGGCACCAACATGTACAGTGTAAGCCGTCCGGTAGAAACACACATGTCAGGGACGTCCAAAAACTCTGCACAGAAAAAGTCGGTCAACACAGCTCCAAACCCCCTGGCAAAAGAGGAGCTGAACATGTTGGCCAGGTTAATGGGGGGTATGGAAGTCCAGAAACCAGGAAATGCAGACAGTGGCTTCCGAGTCAACCTCTTTGCTACAGATGAGGAAGAAGAGGAGGCCTTGATATCGAGACCAGACGAGTTTTCATATGACGTCATAAAAATCCAAGCGACTAAGAACCAGCAAGCCAATGCGGAGCTGGCAAAAATCATGGGGGACTTCACGGAGGAGGCTGGTGAGCCGTGCTCATCGAGTGCCAACAGTAAAGGGGATGACCTTCTGGCCATGATGGATGGGCTGTGACAGTGTTACCATGGTGACCAGAATCTGAGGGCGGGGCTCAAGGCTGAGTTGGTTAGGAACGGTGTGGTCTACTGTAGGACAGTGTCTTGTCTGCTCTGCTGTGCTTGGCCGTCTGTCTCACTCTGCAATTATGGCAGCTGTCTAACAAAAGCACACACAACACCAACCTCATCTTTGTTCGTTTGTCAAGCTTTTCGATGCTGATGTGACATGAACAGGTCAATTAATTTGTTCAGCAAGGACCGACTGTTCATTTTGCAAAAGTGGGAAAACTTTACGCTTACACTCAGTGGCCCGTTTATTAGGTTAACCCATCTTGTACCGGTTTGGACCCCCCAGTAGCCATGAAGGGATGGTCAGCAACAATGTTTAGTTGCGCTGTGGCATTCAAACGTTGATCAactggtatcaagggacctaacctGTGCCAGGAAAATATTCccaacaccattacaccaccgccaccaccttGTACGGTTGACActaggcaggatggggccatggactcatgctgcttatgccaaatcctgactgccatcagcatgacgcaataGGATCTGGGATTCGTCGGACCGGACAATGTTTTTACACTCCTCAATTgtcagtgttggtgatcgcgtgcccactgaAGCCGCTTCtttttgtttttagctgataggagtggaacccggcgttattgtctgctgcaatagcccatccgtgacgaGTTGTGCACAGAGATGCCAATCGGCGTTCAGAGATGCCGTTCGGCACATCACTGTTATACTGCtctgttatttgtctgtttgtggcccgcatGTTaccttgcacgattcttgccattctccttcgaccccCCTCTCATCAAAAAGCTGTTTTTTTACCTCAGGACTGCTGTTTTTAATTTGTTGCACCATTCTCGGGTATTCCCTAGACATTGTCGTgcatgaaaagcccaggagggcggccgtttctgagatactggatacAGCGCACCTGGCACCGATagtcataccacgctcaaagtcgcgtaggtcactcattttgcccattctaacattcaatcgaacagtaactcaATGCCTTgaagcctgtctgtctgctttacaTAGCAGgccacatgactcactgtctgtaagaGCGATCCATTTTtgtgaacagggtggtgtacctaataaactggccgttGATTGTATTTTGTGCTATTATGGTGGTAATCTCAAGAGTTTTTAAAAGTTACAGATACAACAGTTCTGTACTAGTTAGTCGCCCTGAAACGTCAAATGGGACATTTGTTCCACTTCAATCAATGATTTGCGTATCACTGCTGGCttacttctgaagctaagcagggttggtcctggtcagtccttggatgggagaccagatgctgctggaagtggtgttggagggccagtaggaggcactctttccactggtctaaaaaatatcccaatgc

Function

NR:

description
protein OSCP1-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021595520.2 True 2744 mRNA 0.48 10 29447019 29456324

Neighbor

gene id symbol gene type direction distance location
stk40 LOC106583156 coding downstream 3887 29412188 ~ 29443132 (-)
LOC110517416 LOC106605123 coding downstream 58437 29322031 ~ 29388582 (-)
LOC110517348 LOC106604987 coding downstream 245455 29196146 ~ 29201564 (-)
dnali1 dnali1 coding downstream 407581 29034928 ~ 29039438 (-)
rspo1 LOC106605132 coding downstream 525495 28891420 ~ 28921524 (-)
LOC110517486 LOC106583166 coding upstream 126 29456450 ~ 29458390 (-)
mrps15 LOC106583175 coding upstream 2206 29458530 ~ 29463042 (-)
csf3r csf3r coding upstream 19932 29476256 ~ 29487478 (-)
LOC110517512 LOC106605177 coding upstream 38941 29495265 ~ 29496880 (-)
LOC110517528 LOC106583195 coding upstream 322751 29779075 ~ 29901161 (-)
G243330 NA non-coding downstream 56176 29390588 ~ 29390843 (-)
G243322 NA non-coding downstream 60324 29381626 ~ 29386695 (-)
G243309 NA non-coding downstream 78575 29367987 ~ 29368444 (-)
G243257 NA non-coding downstream 160551 29283851 ~ 29286468 (-)
G243568 NA non-coding upstream 72067 29528391 ~ 29528626 (-)
G243678 NA non-coding upstream 210339 29666663 ~ 29666899 (-)
G243928 NA non-coding upstream 290457 29746781 ~ 29748615 (-)
G244069 NA non-coding upstream 491609 29947933 ~ 29948274 (-)
G244091 NA non-coding upstream 515428 29971752 ~ 29972079 (-)
G243154 NA other downstream 294390 29132316 ~ 29152629 (-)
G242796 NA other downstream 500727 28945741 ~ 28946292 (-)
LOC110517244 LOC106582991 other downstream 660741 28781383 ~ 28786278 (-)
G242539 LOC106582989 other downstream 716644 28726970 ~ 28730375 (-)
LOC110517222 NA other downstream 721816 28719454 ~ 28725294 (-)
G244338 NA other upstream 632519 30088843 ~ 30129214 (-)
G244379 NA other upstream 717689 30174013 ~ 30177408 (-)
G244381 LOC106583245 other upstream 742908 30199232 ~ 30199770 (-)
G244393 LOC106583245 other upstream 755246 30211570 ~ 30217682 (-)

Expression


Co-expression Network