LOC110517486 (LOC106583166)


Basic Information

Item Value
gene id LOC110517486
gene name LOC106583166
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 29456450 ~ 29458390 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021595536.2
GCTGTTGAGAGTTGTCTTGAGAAACATAGTAGGAGTGTGTAACCAGCGCTTGTTCACAGCTTTAGTAACTTCCTGTTAGTGTATTGACTCAGATCAGGAGAGGATCAGAGCTGCAGACAAGATAGGTGACACAAGCTGACCCCATTTGATTGACATGTCGAACCCAGTCATCACCCACCAGCCAGGAGCAGGCTCTTATGGGACAAATGTGCAGACGGGCAAGTGGAGCACTGGGCTGTGCTCCTGCTGCAGTGACATCCTAGTCTGTGCCTTGGGCTTCATCTGCCCAATAGCATTAAGTTGCTACACAGCTGACAAGTACGGTGAGAACGTGTGCCTGGCCTGTGTTCCAGGAGGCATGACAGCCATGAGGACCCACATGAGATTGACCTATGGGATTCAGGGGACAATATGCAATGATGCATTGATGACCTGTTGCTGTGGATTCCTTGAGACGTGCAGGATGGCCCGTGAAATTCGCATCAGAAATGGAGACGTTTGACTTGTACAGTCATTTGAAGACGTTTTCAAGTGGAAGTTAAATTAACCTTGTGTCACATATTGTTGATACAAATTGTCAATGTTATACTATGTACATTTTTACTTTTGTATTGTTTAAATTTGACCCCTACCCTCAAACAGTACCTCTTAAAGAATTCATAGCACCATGTATGAACATAAGATGCACAATaaagttatgtttttttttttttttttcaa
>XM_021595535.2
ACATTATGCCCTATGGTTGAACTGTGGTTGAAACTGAAGTGTAAGATTAATCATATGATGACTTTCCTGAACATAGCTTGTAATCGTGTTTACGAGAACTGAAAGAACATCAGATATCTGGTGTTTATCGACCGACCTATGTTAAACCAAGGTTATACTCATTATCTGTCACCTGTGAATTGACCTTGAAACCTATAATACTGTGGAATGGTCAGGTCATTAAACAGCTTAACTGTCCTACTGTGAATTTGGTGTTTTCACTGCTGTTGAGAGTTGTCTTGAGAAACATAGTAGGAGTGTGTAACCAGCGCTTGTTCACAGCTTTAGTAACTTCCTGTTAGTGTATTGACTCAGATCAGGAGAGGATCAGAGCTGCAGACAAGATAGTTTTTAGGTGACACAAGCTGACCCCATTTGATTGACATGTCGAACCCAGTCATCACCCACCAGCCAGGAGCAGGCTCTTATGGGACAAATGTGCAGACGGGCAAGTGGAGCACTGGGCTGTGCTCCTGCTGCAGTGACATCCTAGTCTGTGCCTTGGGCTTCATCTGCCCAATAGCATTAAGTTGCTACACAGCTGACAAGTACGGTGAGAACGTGTGCCTGGCCTGTGTTCCAGGAGGCATGACAGCCATGAGGACCCACATGAGATTGACCTATGGGATTCAGGGGACAATATGCAATGATGCATTGATGACCTGTTGCTGTGGATTCCTTGAGACGTGCAGGATGGCCCGTGAAATTCGCATCAGAAATGGAGACGTTTGACTTGTACAGTCATTTGAAGACGTTTTCAAGTGGAAGTTAAATTAACCTTGTGTCACATATTGTTGATACAAATTGTCAATGTTATACTATGTACATTTTTACTTTTGTATTGTTTAAATTTGACCCCTACCCTCAAACAGTACCTCTTAAAGAATTCATAGCACCATGTATGAACATAAGATGCACAATaaagttatgtttttttttttttttttcaa
>TU278065
ATTGACTCAGATCAGGAGAGGATCAGAGCTGCAGACAAGATAGTTTTTAGGTGACACAAGCTGACCCCATTTGATTGACATGTCGAACCCAGTCATCACCCACCAGCCAGGAGCAGGCTCTTATGGGACAAATGTGCAGACGGGCAAGTGGAGCACTGGGCTGTGCTCCTGCTGCAGTGACATCCTAGTCTGTGCCTTGGGCTTCATCTGCCCAATAGCATTAAGTTGCTACACAGCTGACAAGTACGGTGAGAACGTGTGCCTGGCCTGTGTTCCAGGAGGCATGACAGCCATGAGGACCCACATGAGATTGACCTATGGGATTCAGGGGACAATATGCAATGATGCATTGATGACCTGTTGCTGTGGATTCCTTGAGACGTGCAGGATGGCCCGTGAAATTCGCATCAGAAATGGAGACGTTTGACTTGTACAGTCATTTGAAGACGTTTTCAAGTGGAAGTTAAATTAACCTTGTGTCACATATTGTTGATACAAATTGTCAATGTTATACTATGTACATTTTTACTTTTGTATTGTTTAAATTTGACCCCTACCCTCAAACAGTACCTCTTAAAGAATTCATAGCACCATGTATGAACATAAGATGCACA

Function

NR:

description
cornifelin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021595536.2 False 720 mRNA 0.44 4 29456450 29458128
XM_021595535.2 False 989 mRNA 0.42 4 29456450 29458390
TU278065 True 614 TUCP 0.45 4 29456481 29458046

Neighbor

gene id symbol gene type direction distance location
oscp1b LOC106583166 coding downstream 126 29447019 ~ 29456324 (-)
stk40 LOC106583156 coding downstream 13318 29412188 ~ 29443132 (-)
LOC110517416 LOC106605123 coding downstream 67868 29322031 ~ 29388582 (-)
LOC110517348 LOC106604987 coding downstream 254886 29196146 ~ 29201564 (-)
dnali1 dnali1 coding downstream 417012 29034928 ~ 29039438 (-)
mrps15 LOC106583175 coding upstream 140 29458530 ~ 29463042 (-)
csf3r csf3r coding upstream 17866 29476256 ~ 29487478 (-)
LOC110517512 LOC106605177 coding upstream 36875 29495265 ~ 29496880 (-)
LOC110517528 LOC106583195 coding upstream 320685 29779075 ~ 29901161 (-)
LOC110517552 LOC106583212 coding upstream 670863 30129253 ~ 30138703 (-)
G243330 NA non-coding downstream 65607 29390588 ~ 29390843 (-)
G243322 NA non-coding downstream 69755 29381626 ~ 29386695 (-)
G243309 NA non-coding downstream 88006 29367987 ~ 29368444 (-)
G243257 NA non-coding downstream 169982 29283851 ~ 29286468 (-)
G243568 NA non-coding upstream 70001 29528391 ~ 29528626 (-)
G243678 NA non-coding upstream 208273 29666663 ~ 29666899 (-)
G243928 NA non-coding upstream 288391 29746781 ~ 29748615 (-)
G244069 NA non-coding upstream 489543 29947933 ~ 29948274 (-)
G244091 NA non-coding upstream 513362 29971752 ~ 29972079 (-)
G243154 NA other downstream 303821 29132316 ~ 29152629 (-)
G242796 NA other downstream 510158 28945741 ~ 28946292 (-)
LOC110517244 LOC106582991 other downstream 670172 28781383 ~ 28786278 (-)
G242539 LOC106582989 other downstream 726075 28726970 ~ 28730375 (-)
LOC110517222 NA other downstream 731247 28719454 ~ 28725294 (-)
G244338 NA other upstream 630453 30088843 ~ 30129214 (-)
G244379 NA other upstream 715623 30174013 ~ 30177408 (-)
G244381 LOC106583245 other upstream 740842 30199232 ~ 30199770 (-)
G244393 LOC106583245 other upstream 753180 30211570 ~ 30217682 (-)
G245366 LOC106605077 other upstream 1486563 30944953 ~ 30945843 (-)

Expression


Co-expression Network