mrps15 (LOC106583175)


Basic Information

Item Value
gene id mrps15
gene name LOC106583175
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 29458530 ~ 29463042 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021595531.2
AGCATCCTTCTCATTTCCTGAATTGACTTCTCCGTCTGATTGGTTATGTCTAATCAAAATGGCGATCCTCATGTGAGGGACGAATGCTGtttactcgttacattttgaccaTTAATACCGGACATATATCAAATCATCTCTGAATCAGCCATGTTATCAAGCATGGCTTTAAGAAGTGCTTTTAAATcgacatctgtcgttctgcgaGAATGTGGTGTTTTATCCAGACTGAAAGGAACCTGTGCGTCTCTCCGATTGAGACATGGGGCATTCACCTCTGTCACCACAGGGCCTTCACACAGCAACAATGAGACTGCATTGACagGTATTGGGAGTTTCACCATTCAGTCTGTGAGAAACTATGCCCGTGTCGTAAGAAAGAAGAAGCCAGTGATGAAAAGTCAGTTGAGTGATCTTCCTCCGACAATGCTGAAAATGGAATATGCCGCTGTTCCACTCGCTCAAACAGCTGATGACCTTGTCAAAAGACTTCTGACACTGGAACTAGCAAGCCATAGCGAGAAGTTGAAATTGAAAACGGAGCAGCTGATTGCAAAAGTCCAGAGGGATGAAGCTGACCGCAGCTCTACAGAAGTCAAGGTGGCCATTTTGACCTCCAAAATCCGAAACTACCAGGAGCACCTGCACAAACATACAAAGGACAAAGCGAACAAGCGATGGATGCTCATGGCCATTGACCGCAGGAAGAAGCTGCTCAAGCACCTCAGGGTAACGCGCTACGACGCCTTTGAACATGTCTGCCAGCAGCTGGGCATCACCTACACTTTCCCTCCGGAGTACTACAGACATGCCACCCGACGCTGGCTGGCCAAGAAGGCCCTGTGCATAAAGGTCTTCAAAGAGGTGCAGAAACAGAAACTGGAGCAAAGGAAGAAAATTAAGCAGACCCCTCCCCCCACGTTGGCAGAACCAGCCAGGACAGCAGCTACAGGAACCCAATAAACTGCTACAGTATCCAATGTCTGTCTTATGCATTCAGTCTTGCTCTCAATGGACAAATTAGTTTTGCATGGCCCAGTGAGCGGGGTTTGCTCCTTTTCGACCATTCCATTTGTCCTAAGGAGAAATCTCCACCCACCCATGCCACCAGTTCATGTAAAATTAATTTTCCCATGTATTGTTATACTGTAATAAGAAACATGAATAACTTATTGTTTGTAGTACACCAAGTCTTCATTCTTCTTGTCCCTTCTGCAAGTAGATGCATCATCAAATAAATGCAGTGACGCAGATATGTGGTTTTGGTGTGGGCAATGTCTATGTGCTCCACATATGTGACCTGAGAGTGTCAAATAAACCCACAATGAATCATTTAATAAAATGTATTGTATAATCCA

Function

NR:

description
28S ribosomal protein S15, mitochondrial-like

GO:      GO:0030529

KEGG:

id description
K02956 RP-S15, MRPS15, rpsO; small subunit ribosomal protein S15

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021595531.2 True 1358 mRNA 0.45 8 29458530 29463042

Neighbor

gene id symbol gene type direction distance location
LOC110517486 LOC106583166 coding downstream 140 29456450 ~ 29458390 (-)
oscp1b LOC106583166 coding downstream 2206 29447019 ~ 29456324 (-)
stk40 LOC106583156 coding downstream 15398 29412188 ~ 29443132 (-)
LOC110517416 LOC106605123 coding downstream 69948 29322031 ~ 29388582 (-)
LOC110517348 LOC106604987 coding downstream 256966 29196146 ~ 29201564 (-)
csf3r csf3r coding upstream 13214 29476256 ~ 29487478 (-)
LOC110517512 LOC106605177 coding upstream 32223 29495265 ~ 29496880 (-)
LOC110517528 LOC106583195 coding upstream 316033 29779075 ~ 29901161 (-)
LOC110517552 LOC106583212 coding upstream 666211 30129253 ~ 30138703 (-)
LOC110517624 LOC106583256 coding upstream 760219 30223261 ~ 30249900 (-)
G243330 NA non-coding downstream 67687 29390588 ~ 29390843 (-)
G243322 NA non-coding downstream 71835 29381626 ~ 29386695 (-)
G243309 NA non-coding downstream 90086 29367987 ~ 29368444 (-)
G243257 NA non-coding downstream 172062 29283851 ~ 29286468 (-)
G243568 NA non-coding upstream 65349 29528391 ~ 29528626 (-)
G243678 NA non-coding upstream 203621 29666663 ~ 29666899 (-)
G243928 NA non-coding upstream 283739 29746781 ~ 29748615 (-)
G244069 NA non-coding upstream 484891 29947933 ~ 29948274 (-)
G244091 NA non-coding upstream 508710 29971752 ~ 29972079 (-)
G243154 NA other downstream 305901 29132316 ~ 29152629 (-)
G242796 NA other downstream 512238 28945741 ~ 28946292 (-)
LOC110517244 LOC106582991 other downstream 672252 28781383 ~ 28786278 (-)
G242539 LOC106582989 other downstream 728155 28726970 ~ 28730375 (-)
G244338 NA other upstream 625801 30088843 ~ 30129214 (-)
G244379 NA other upstream 710971 30174013 ~ 30177408 (-)
G244381 LOC106583245 other upstream 736190 30199232 ~ 30199770 (-)
G244393 LOC106583245 other upstream 748528 30211570 ~ 30217682 (-)
G245366 LOC106605077 other upstream 1481911 30944953 ~ 30945843 (-)

Expression


Co-expression Network