LOC110517552 (LOC106583212)


Basic Information

Item Value
gene id LOC110517552
gene name LOC106583212
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 30129253 ~ 30138703 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021595555.2
CAGCAACACTGCTCTCACGACACTGGACATAGCAACAGGTCAGTGGGTACTATATGGCGTTCTAGCATTCACCATGGAGTGTGACAGCATTGACCTGAAAAGAGCAGAGCTATTTTCATTCTGACATTCTGACTTTCATTCTCTTCACCTTTATTCCTACCATCTGGCTGTTGGGAAAGTTAGGATAGGACAATGTGAGGAGATACTACAGCAGCATGGCGACGCACATCCTGTGGTGTGCGTTTGCATGGACATTCAAGGGTCTGTTATGTACCTGCAGGTTCTTCTGGGTGAGCCCATACTACTCAATCAAATACATGCCCAATGAACCTCACAGAACAGGGAAGGATCAAGTGAAACAAAAAACAGGCTCAGCGAATCAGGAAATACCAGGAAGTCATGATAGCAGTGCCATGCAGAGGAGATTGTCCAAAGCTGAGAGGGAGATTCAGGCCCTAAAAACCCAGATCACCTTTGAGAGGGCAACATGGGAGAGGAAGTTTGTGGAACTGCAGCTGATCTCTGAGACTGTAGCCAGGCCTGGAAGTTTACTTCAGGTGGGCAGCTTCGAGGACCTGGGCGAGTCAGAGGTGGAAAACAGACAGTCGAACGATGGAAAGGACCAGGACAGCTCAAGCAGCTTGAGCCATTCCAACCGAAGCAAAGGGTCTGAGAGGATGTCATCAACAGGCGACACATGCCAAAGCAGCTTGTCTTGCAGCCAGGTCTCATTGAACTCAGCATTTGGCTTCAGACCCATTTCTGCTCTGTCTCCAGCCACCAGTGGGAGCTCCTGGAGGAGCTACACCGGTCCACACCGTGTCTTTGTGCCTCACTCCCCCCTGGACCTGCAGACGGGACACCGGGTTCGAGTCCTGTTGCCCTCGGGACGGATCAGCACAGGCACGGTTCGTTACCTGGGCCACCTGGAGGGGGAGCCAGACTTCCATATGGGAGTGGAGCTGGAATCACTTGAACACGGGCAGCAAGATGGCACACACAGGGGACAGTGCTACTTTGAATGCAAGGCTGGCCACGGTGCCTTTGTGCCATTCACCAAGTTGTTGATGGCATGggagtgatgacatcacagtctCTATGGTGGAGGGTCACATCTGGATATTTCATATGGACTCTTTGGCATCAATTACGAATGGTCTCTGaaagacacctactcatttaagggtatttctttatttttactatattctacattgtagaatgata
>XM_021595551.2
TCAGCAACACTGCTCTCACGACACTGGACATAGCAACAGGTCAGTGGGTACTATATGGCGTTCTAGCATTCACCATGGAGTGTGACAGCATTGACCTGAAAAGAGCAGAGCTATTTTCATTCTGACATTCTGACTTTCATTCTCTTCACCTTTATTCCTACCATCTGGCTGTTGGGAAAGTTAGGATAGGACAATGTGAGGAGATACTACAGCAGCATGGCGACGCACATCCTGTGGTGTGCGTTTGCATGGACATTCAAGGGTCTGTTATGTACCTGCAGGTTCTTCTGGGTGAGCCCATACTACTCAATCAAATACATGCCCAATGAACCTCACAGAACAGGGAAGGATCAAGTGAAACAAAAAACAGGCTCAGCGAATCAGGAAATACCAGGAAGTCATGATAGCAGTGCCATGCAGAGGAGATTGTCCAAAGCTGAGAGGGAGATTCAGGCCCTAAAAACCCAGATCACCTTTGAGAGGGCAACATGGGAGAGGAAGTTTGTGGAACTGCAGGTGATACAGCAGGACCTACattatcagCTGATCTCTGAGACTGTAGCCAGGCCTGGAAGTTTACTTCAGGTGGGCAGCTTCGAGGACCTGGGCGAGTCAGAGGTGGAAAACAGACAGTCGAACGATGGAAAGGACCAGGACAGCTCAAGCAGCTTGAGCCATTCCAACCGAAGCAAAGGGTCTGAGAGGATGTCATCAACAGGCGACACATGCCAAAGCAGCTTGTCTTGCAGCCAGGTCTCATTGAACTCAGCATTTGGCTTCAGACCCATTTCTGCTCTGTCTCCAGCCACCAGTGGGAGCTCCTGGAGGAGCTACACCGGTCCACACCGTGTCTTTGTGCCTCACTCCCCCCTGGACCTGCAGACGGGACACCGGGTTCGAGTCCTGTTGCCCTCGGGACGGATCAGCACAGGCACGGTTCGTTACCTGGGCCACCTGGAGGGGGAGCCAGACTTCCATATGGGAGTGGAGCTGGAATCACTTGAACACGGGCAGCAAGATGGCACACACAGGGGACAGTGCTACTTTGAATGCAAGGCTGGCCACGGTGCCTTTGTGCCATTCACCAAGTTGTTGATGGCATGggagtgatgacatcacagtctCTATGGTGGAGGGTCACATCTGGATATTTCATATGGACTCTTTGGCATCAATTACGAATGGTCTCTGaaagacacctactcatttaagggtatttctttatttttactatattctacattgtagaatgata
>XM_036973792.1
GTCAGCAACACTGCTCTCACGACACTGGACATAGCAACAGGTCAGTGGGTACTATATGGCGTTCTAGCATTCACCATGGAGTGTGACAGCATTGACCTGAAAAGAGCAGAGCTATTTTCATTCTGACATTCTGACTTTCATTCTCTTCACCTTTATTCCTACCATCTGGCTGTTGGGAAAGTTAGGATAGGACAATGTGAGGAGATACTACAGCAGCATGGCGACGCACATCCTGTGGTGTGCGTTTGCATGGACATTCAAGGGTCTGTTATGTACCTGCAGGTTCTTCTGGGTGAGCCCATACTACTCAATCAAATACATGCCCAATGAACCTCACAGAACAGGGAAGGATCAAGTGAAACAAAAAACAGGCTCAGCGAATCAGGAAATACCAGGAAGTCATGATAGCAGTGCCATGCAGAGGAGATTGTCCAAAGCTGAGAGGGAGATTCAGGCCCTAAAAACCCAGATCACCTTTGAGAGGGCAACATGGGAGAGGAAGTTTGTGGAACTGCAGGTGATACAGCAGGACCTACattatcagCTGATCTCTGAGACTGTAGCCAGGCCTGGAAGTTTACTTCAGGTGGGCAGCTTCGAGGACCTGGGCGAGTCAGAGGTGGAAAACAGACAGTCGAACGATGGAAAGGACCAGGACAGCTCAATGGGAGCTCCTGGAGGAGCTACACCGGTCCACACCGTGTCTTTGTGCCTCACTCCCCCCTGGACCTGCAGACGGGACACCGGGTTCGAGTCCTGTTGCCCTCGGGACGGATCAGCACAGGCACGGTTCGTTACCTGGGCCACCTGGAGGGGGAGCCAGACTTCCATATGGGAGTGGAGCTGGAATCACTTGAACACGGGCAGCAAGATGGCACACACAGGGGACAGTGCTACTTTGAATGCAAGGCTGGCCACGGTGCCTTTGTGCCATTCACCAAGTTGTTGATGGCATGggagtgatgacatcacagtctCTATGGTGGAGGGTCACATCTGGATATTTCATATGGACTCTTTGGCATCAATTACGAATGGTCTCTGaaagacacctactcatttaagggtatttctttatttttactatattctacattgtagaatgata

Function

NR:

description
PREDICTED: uncharacterized protein LOC106583212 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021595555.2 False 1227 mRNA 0.50 8 30129253 30138701
XM_021595551.2 False 1255 mRNA 0.50 8 30129253 30138702
XM_036973792.1 True 1108 mRNA 0.50 7 30129253 30138703

Neighbor

gene id symbol gene type direction distance location
LOC110517528 LOC106583195 coding downstream 228092 29779075 ~ 29901161 (-)
LOC110517512 LOC106605177 coding downstream 632373 29495265 ~ 29496880 (-)
csf3r csf3r coding downstream 641775 29476256 ~ 29487478 (-)
mrps15 LOC106583175 coding downstream 666211 29458530 ~ 29463042 (-)
LOC110517486 LOC106583166 coding downstream 670863 29456450 ~ 29458390 (-)
LOC110517624 LOC106583256 coding upstream 84558 30223261 ~ 30249900 (-)
smpdl3b smpdl3b coding upstream 160054 30298757 ~ 30304553 (-)
LOC110517657 themis2 coding upstream 185054 30323757 ~ 30336172 (-)
LOC110517711 LOC106583306 coding upstream 205257 30343960 ~ 30361770 (-)
LOC110517778 LOC106583350 coding upstream 439095 30577798 ~ 30591085 (-)
G244251 NA non-coding downstream 50253 30078700 ~ 30079000 (-)
G244157 NA non-coding downstream 113826 30015217 ~ 30015427 (-)
G244156 NA non-coding downstream 114163 30014878 ~ 30015090 (-)
G244151 NA non-coding downstream 116570 30012466 ~ 30012683 (-)
G244091 NA non-coding downstream 157174 29971752 ~ 29972079 (-)
G244385 NA non-coding upstream 61650 30200353 ~ 30200561 (-)
G244389 LOC106583245 non-coding upstream 64666 30203369 ~ 30204352 (-)
G244391 NA non-coding upstream 69922 30208625 ~ 30208903 (-)
G244392 LOC106583245 non-coding upstream 70593 30209296 ~ 30209919 (-)
G244393 LOC106583245 non-coding upstream 75070 30211570 ~ 30217682 (-)
G244338 NA other downstream 39 30088843 ~ 30129214 (-)
G243154 NA other downstream 976624 29132316 ~ 29152629 (-)
G242796 NA other downstream 1182961 28945741 ~ 28946292 (-)
LOC110517244 LOC106582991 other downstream 1342975 28781383 ~ 28786278 (-)
G244379 NA other upstream 35310 30174013 ~ 30177408 (-)
G244381 LOC106583245 other upstream 60529 30199232 ~ 30199770 (-)
G245366 LOC106605077 other upstream 806250 30944953 ~ 30945843 (-)
LOC110518371 LOC106583543 other upstream 1423842 31562384 ~ 31631107 (-)

Expression

LOC110517552(LOC106583212) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 15.
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LOC110517552(LOC106583212) Expression in each Bioproject

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LOC110517552(LOC106583212) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 600.
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Co-expression Network