LOC110517685 (LOC106605108)


Basic Information

Item Value
gene id LOC110517685
gene name LOC106605108
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 30336633 ~ 30342478 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021595618.2
AGTCTATAAATGGAATATAAAACAAGGATGTTGCTCCAGTAGTCTGTTCTTCTGTTCAGTGACTTTTCAATAAAAAATGGTCTATTCTATTGACTATTCTTGAAGTTATTCAATCTGATTCAAGGGAATGCGCGATAATGAAACCTAGGCATAATAACTGTATGCGTTAGTGCGTGTATGTTCATAGTTGCCATTACATTTCAGTAGGTAACCTTTTTTCTAGGGTCGAATCAAGTCATTGTAGATAATGGAATGCATTACTTTCCTTTCGTCCATTTGGGCAGAGACGGGGAGATTTGGCTGTCAACGGATTAACCCGCCCAAAACTACAATTCCCAAACCAAGGGAACATTTTACCCAGCATTCAACGTGTTTGTGAATGGGATAATGCTGCAAGATGGCGACAATTGCAACTGCTACAAACTTACCATCTTTTGATTGTCCAACATGGGCAGGCAAGCCCCCTCCAGGACTCCATTTGGACGTGATGAAAGGTGACAAAATGGTCGAGAAACTGATCATTGACGAGAAAAAGTACTACTTATTCGGGAGGAACCCGGACATGTGTGACTTCACCATCGACCACCAGTCATGTTCACGCGTGCATGCTGCCCTGGTCTACCACAAGCACCTGAAGAGGGTGTTCCTTATTGATAACAACAGCACGCATGGTACCTTCCTGGGACACATCCGCCTGGAGCCCAATAAGCCTCAGCAGGTCCCCATAGACTCCACCATGTCGTTTGGGGCGTCCACGAGAGCCTACACCATCCGGGAGAAACCTCAGAGCCAGCAAGGAACCAATGCCGCCACAGGGGACAGCAAGGCCGGAGAGGACGAGGAGGGGTCTAAGGGCCTCTTAGGATTACCAGAGGAGGAGACCGAGTTAGAGAACCTGACAGAGTTCAACACGGCCCACAACAAGCGCATCTCCACCCTGACCATCGAGGAGGGCAACCTAGAGATCCAGAGACCCAAGAGGAAGAGGCGGAACTCCAGAGTCACCTTCAACGAGGACGATGAGGTCATCAACCCGGAGGACATTGATCCCTCTGTGGGGCGCTTCAGGAACATGGTGCAGACTGCTGTCGTCCCTATAAAGAAACAGAAAATGGAGAGGCACGGCTCACTTAGTATGGACGACGTTGTGACGAGGCGCATCCACAACTACACCTTCGGCGGCGGCCTTTACGGGGACCTGCCACCCACCAGCCACGAGGGCCACCACGCCGGGGCCCCAAGCGGAGCCACTATTCTGGGGGGTCTCCCTCTGCCCTTCCCCAACCCTGCCCCAGAGGTGAACCTGGCCCCGGACGCCCCCCAGCCACCTGTCACCCTCAACCCTGTCCCCGTTACAGGCCCCTATCCCTCCGAGGTCCTCAACGAGCCCCGCAAGAAAAAGTATGCTAAAGAGGCATGGCCAGGCAAGAAGCCCACCCCCTCCCTACTAATCTAACCCTCTCCCTACACTATGGCTCTTTCTCGATTCGTCTTTCCTCTGTACTTTACCTCCTCTCTCATGCATTGTAGAAGATCCAAGGTGTCTCCTCTTGGACCTTCTCCAATGTATTttgaggcgaggagagaggacatgagaaatCCAGGAAAGCCGAATTGGGAAAGAGCCTATGTGGTGGAGGCAGGGCTGACTCTCAGGGTATGGGCGGAGACATCAGGGACCATGACCCGTTGGAGGCGGATCGATTTTTCTTAAGACTGTTTTGTCAATGTTTTCTACGTTACTTCCTCGTTCTCCTAAAGATTATCCGAAAGTCTTCAGTAGTACATTCCATGAAGACAGGAACACCACTCCTTCGGGAGATGAATGTTTGATGTGTTTTACAAATGAAGTCATGTAAAAAAGGCAGTACTTGGCAGACCAAGTCAGTTGGTCAGATAAGAGTAACTTGTGGCATAAATCAGTGTCCCATGGCCGTGATATTTTACCTCTAATTGATAGTCAGGCATCGTGCAGGGAAACAAACACGAAGCGAATGTAACTTAGGAAAACAGCCCttatgttggaaacaaacatcattatgttctCATCCAGATTCACATGGATTTATTTTCCATGCTACAGCACCCAATattacagcaggtttttaaaggacctgCTCCGTGTTGCCATTTTTGCTATGGGAAAAAcattgcgatactggtatcacAGCCTAATCGTTATATGGTTGGTCACTGTGAGTTCCATATTACGATCTCCACTTCCTTCTTTAAGGTCTTAGACTTCAAACAAATATCATCTTTGGACATAGTATTTTTGCTCACTGTAAacatgcatatacagtgcattcggaaagtattcagaccccttgatttttttccaacattttgttacttaacagccttattctaaaataggtgcatttaaaaaaaaaaattgtatccaTCTGCACACAATACTCCACGTCGAAGCAAAAACAgtgttttagacattttagcaagtTATTAAAAATAGAATGctgaaaatatcacatttacataatcgcacctttggcagtgattacagcctcgagtcttcttgagtatgatgctacaagcttggcagacctttatttggggagcttttttcaggtctctccagaga

Function

NR:

description
nuclear inhibitor of protein phosphatase 1-like

GO: NA

KEGG:

id description
K13216 PPP1R8, NIPP1; nuclear inhibitor of protein phosphatase 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021595618.2 True 2602 mRNA 0.47 7 30336633 30342478

Neighbor

gene id symbol gene type direction distance location
rpa2 rpa2 coding upstream 13062 30310185 ~ 30323571 (+)
LOC110517644 NA coding upstream 43412 30289328 ~ 30293221 (+)
LOC110504010 LOC106583270 coding upstream 55061 30261103 ~ 30281572 (+)
LOC110517635 LOC106583263 coding upstream 115649 30218320 ~ 30220984 (+)
LOC110517613 LOC106583245 coding upstream 118940 30196595 ~ 30217693 (+)
LOC110517739 med18 coding downstream 20683 30363161 ~ 30367437 (+)
LOC110504017 LOC106583301 coding downstream 33097 30375575 ~ 30412306 (+)
LOC110517766 LOC106605102 coding downstream 206093 30548571 ~ 30576208 (+)
LOC118964363 NA coding downstream 269914 30612392 ~ 30612447 (+)
LOC110517876 LOC106583352 coding downstream 272720 30615198 ~ 30627079 (+)
G244447 NA non-coding upstream 29788 30303389 ~ 30306845 (+)
G244446 NA non-coding upstream 48847 30286007 ~ 30287786 (+)
G244445 NA non-coding upstream 52455 30283829 ~ 30284178 (+)
G244443 NA non-coding upstream 53675 30282533 ~ 30282958 (+)
G244433 LOC106583306 non-coding downstream 16341 30358819 ~ 30359857 (+)
G244466 NA non-coding downstream 32413 30374891 ~ 30375142 (+)
G244481 NA non-coding downstream 53175 30395653 ~ 30395929 (+)
G244482 NA non-coding downstream 54655 30397133 ~ 30397350 (+)
G244487 NA non-coding downstream 64547 30407025 ~ 30407245 (+)
G244292 LOC106583212 other upstream 199069 30132399 ~ 30137564 (+)
G243679 LOC107756720 other upstream 645837 29668379 ~ 29690796 (+)
LOC110517275 LOC106583018 other upstream 1301919 28995823 ~ 29034924 (+)
LOC110516993 LOC106605183 other upstream 2586907 27725189 ~ 27749972 (+)
LOC110516984 NA other upstream 2612839 27705985 ~ 27723794 (+)
G244691 NA other downstream 289292 30631770 ~ 30632533 (+)
G244851 cep85 other downstream 523088 30865566 ~ 30874608 (+)
LOC110518244 LOC106583484 other downstream 575553 30918022 ~ 30924289 (+)
LOC110518266 LOC106583495 other downstream 602260 30939321 ~ 31127608 (+)
G244956 NA other downstream 694039 31036517 ~ 31037252 (+)

Expression


Co-expression Network