LOC110517847 (tpi1b)


Basic Information

Item Value
gene id LOC110517847
gene name tpi1b
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 30606964 ~ 30611799 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021595716.2
GAGGTGGGGTTACGTGGCCAGTGATAATAAATACAGTGAGTTGCTCACGCGTAGTTGCGCTTCTCCCCGAAGTAGGTACATCCAGCTCTGTTTTAAGGCCGAGGAACGACCCCAAACTGCAAATATGTCCAGAAAATTCTTCGTCGGTGGTAACTGGAAGATGAATGGCGACAAGGCAAGCCTGGGCGAACTCATCAAAACCCTGAACTCTGCGAAGCTCGACCCCAACACCGAGGTGGTCTGCGGCGCCCCATCAATCTACCTTGAGTTCGCCAGGTCCAAGCTGGACCCTAAGATCGGAGTGGCCGCTCAGAACTGCTACAAGGTCAAGGGTGGTGCCTTCACCGGGGAGATCAGccCTGCGATGATCAAGGACGTTGGCGTGCACTGGGTGATCCTTGGCCACTCTGAGAGGCGCTGGGTCTTTGGAGAGACTGATGCGCTTATTGGTCAGAAGTGCGCCCACGCCCTGGAGAATGGCCTGGGTGTCATTGCCTGCATTGGTGAGAAGCTGGACGAGAGGGAGGCTGGCATCACGGAGAAGGTCATCAACGCACAGACCAAGCACTTCGCAGACAACATTAAGGACTGGTCCAAGGTTGTTCTGGCCTATGAGCCCGTGTGGGCCATCGGCACCGGCAAGACCGCATCCCCCGCCCAGGCCCAGGACGTTCATGACAAACTGAGGCAGTGGGTCAAGGCCAATGTGTCTGAGGCAGTAGCCAACTCTGTCAGGATAATCTATGGAGgtTCCGTGACAGGTGGCACCTGCAAGGAGCTGGGAGGCATGAAGGATGTGGACGGTTTCCTGGTTGGCGGCGCTGCACTCAAGCCAGAGTTCGTTGACATCATCAACGCCAAGCAATAAAAACCCTGACGTGGTCAGACCCATGCCAATATTTGAGGCCAACTCCATTCAGATGAAACATGAACCATCATCCTCAACTCGGCACTTAGATCCCCCTTCCCTTACCCTTTTTTTATTCAAGTATTTGTGACGATGTCTTTACCGGTTTCCTGTTTTGGTTGAATGTCTCAAAGAAAAGGGACAGATTGACTAGCATACTATACAGCAGTGAAAGGTGTTCGTTCCACTGAGATGGTGTTTTTTTTGTACTGGCCTCCACTACTGTTTAAAGGGACTGCGCTTGACAACACCATTCTGGATGGAACAACCATGCCTTTTACTTGAAAGTTTACAAGCTTTTATGTATACAGTGTCAACTAGCAACGTCAATCAGATTCACTTGCCTTTGCACTAAAGCTGAGTCTTTGTAACTATGTTCTATGGCTTATCCCTTCCCATAGAACACACGCCTCCCTCCGGTCAGGAGGGAGGCGTCCATTTACATGTCCATGTTTGGTCATGGCCGACTGAGGGGGTGGGGGCCTAGGAAATGTTGTAATAAAAGGTTTAGACTA

Function

symbol description
tpi1b Predicted to enable methylglyoxal synthase activity; protein homodimerization activity; and triose-phosphate isomerase activity. Predicted to be involved in several processes, including gluconeogenesis; glyceraldehyde-3-phosphate biosynthetic process; and methylglyoxal biosynthetic process. Predicted to be located in cytoplasm. Predicted to be active in cytosol. Is expressed in several structures, including brain; cardiovascular system; mesoderm; musculature system; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in carbohydrate metabolic disorder and triosephosphate isomerase deficiency. Orthologous to human TPI1 (triosephosphate isomerase 1).

NR:

description
triosephosphate isomerase B-like

GO:

id name namespace
GO:0006094 gluconeogenesis biological_process
GO:0006096 glycolytic process biological_process
GO:0004807 triose-phosphate isomerase activity molecular_function

KEGG:

id description
K01803 TPI, tpiA; triosephosphate isomerase (TIM)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021595716.2 True 1422 mRNA 0.51 7 30606964 30611799

Neighbor

gene id symbol gene type direction distance location
LOC118951153 LOC106605099 coding downstream 13137 30592103 ~ 30593827 (-)
LOC110517778 LOC106583350 coding downstream 15879 30577798 ~ 30591085 (-)
LOC110517711 LOC106583306 coding downstream 245194 30343960 ~ 30361770 (-)
LOC110517657 themis2 coding downstream 270792 30323757 ~ 30336172 (-)
smpdl3b smpdl3b coding downstream 302411 30298757 ~ 30304553 (-)
gnb3a LOC106583400 coding upstream 86008 30697807 ~ 30710196 (-)
p3h3 LOC106583419 coding upstream 102107 30713906 ~ 30725406 (-)
LOC110518094 LOC106583440 coding upstream 188498 30800297 ~ 30811533 (-)
LOC118951441 NA coding upstream 201500 30813299 ~ 30818102 (-)
LOC110518140 cep85 coding upstream 249215 30861014 ~ 30881486 (-)
G245127 atp1a3 non-coding downstream 30747 30518427 ~ 30576217 (-)
G245136 NA non-coding downstream 46187 30544615 ~ 30560777 (-)
G245157 NA non-coding downstream 108390 30498015 ~ 30498574 (-)
G244607 NA non-coding downstream 162998 30443750 ~ 30443966 (-)
G244606 NA non-coding downstream 163904 30442650 ~ 30443060 (-)
G245204 NA non-coding upstream 6096 30617895 ~ 30619600 (-)
G245219 NA non-coding upstream 30555 30642354 ~ 30652907 (-)
G245188 LOC106605095 non-coding upstream 53404 30665203 ~ 30667510 (-)
G245278 NA non-coding upstream 99355 30711154 ~ 30711398 (-)
G245279 NA non-coding upstream 100245 30712044 ~ 30712280 (-)
G244393 LOC106583245 other downstream 389375 30211570 ~ 30217682 (-)
G244381 LOC106583245 other downstream 407194 30199232 ~ 30199770 (-)
G244379 NA other downstream 429556 30174013 ~ 30177408 (-)
G244338 NA other downstream 477750 30088843 ~ 30129214 (-)
LOC110517486 LOC106583166 other downstream 1148918 29456450 ~ 29458390 (-)
G245366 LOC106605077 other upstream 333154 30944953 ~ 30945843 (-)
LOC110518371 LOC106583543 other upstream 950746 31562384 ~ 31631107 (-)
G248239 LOC106605043 other upstream 2807630 33419429 ~ 33419707 (-)
G249485 LOC106584080 other upstream 3745476 34357275 ~ 34359451 (-)
G249978 NA other upstream 4277707 34889506 ~ 34889954 (-)

Expression


Co-expression Network