LOC110517885 (LOC106605095)


Basic Information

Item Value
gene id LOC110517885
gene name LOC106605095
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 30627852 ~ 30667510 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021595732.2
agtgcaATTTGGCAGGGAGCTAGAATtggagctgagaggagagaggacgcagTGTGGGCGGGTTAAGAAACACGGAGAGGGAGGGGACGTCAGCGTTATATTCCCATCGTTTTTACCCCTTCATACGACGTCTGCCGAAAACAAGGACATCGGTATTGAGATTCTATCCGTTCGTATCACTGTCTTGCGTCAAACTGAGGCGTACACATTTGAGCATCTTCAAGAGATCTGTGTATGAAATCCCGATACCTGCGCTTTAGTTTTTTTTGCGTCGGAGGATAGCTGAGCTGCAAAAGCGCGGATGCTACGAGGGTAGCGTTGGGTACCAAAACACCTCACTCACCACGaTGGACAGAATGagttgtctctccttcctcctcctttgCTTGACTTCGGTTGCCAATGGCAACAAAGCCAATAAGCACAAGCCATGGATCGAGACGGAGTACCAGGGTATTGTCATGGAGAACGACAATACCGTTCTTCTCAACCCACCACTGTTCGCCCTGGATAAAGACGCTCCACTGCACTACGCAGgtgAGATCTGTGGCTTCCGGGTGCACAATGGGCCCTCGGGATCCAGTTCGGTCCAGTTTGAGGCGGTGGTTCTGGACCGCTCGACAGGGGAGGGCCTGGTCCGCTCTAAAGAGCCATTGGACTGTGAGAGCCAGCGGGAGCACAGCTTCACCATCCAGGCCTATGACTGTGGAGAGGGCCCCGATGGAGCCAACAGCAAGAAGTCCCACAAggCCACGGTGCATGTACGTGTGAACGACGTAAACGAGTTCTCCCCAGTGTTCGTGGAGCGTCGCTACGAGGCCTCAGTCCCAGAAGGCCGTCTGTTCGACCACATCGTGCGCGTTGAGGCCCTCGACGCAGACTGCTCCCCGCAGTACAGCCAGATCTGCTTCTACGACATCATCACCCCCAACGTTCCCTTTGTCATCGATAACGATGGTAACATTAAGAACACAGAGCCATTGGATTCGAAGCGCCAGCGTGTCCACACCTTCTGGGTGACCGCGTTCGACTGTGGCAAGAACCGAGCTCAGGCCGACGCCCAGGTCGTCGTCACGGTCAAACCGTCCTGCAAACCCGGCTGGATCGGCTGGTCGAAGCGGGTGGAGTATACCCCCGGGTCAGGCAGCATTCCCCTGTTCCCCAGTTTGCACCTGGAGACCTGCGAAGAGACTGTGTGGAACATCCAGGCCACCGTAGAGCTGCAGACTGGCCATATTGGGAAGGGCTGTGACAGGGACAGCTACTCAGACCGATCAGTGCGCAGACTCTGTGGTGCTGTGAGAGGTGAAGTGGACTTACTCCCGCCCCCGTCCCCAGCAGCCAATTGGACCTCAGCCTTGCCCACCCTCCCTTCTTCTGATTCATCCCTGGTGTTCTCCTTCAATGGCTCCACCCATGTTGCCATGGTACCCGACTCTATTGCCGCGGCCGTATCCGGAGACCATTTCACCCTCCAGCTGTGGATGAGAAGGGGTGGAATCAACACCCAGCCTCCGACTAATCAGGCCAGAGGAAACCGCAGGGAGGAGGAGACTATCGTCTGCAGTACCGTCAAGAATGGTCAGTCAAATGaCGACTCCTTCTCCCACTACTCTCTCTCCGTTCACGGCTGCCGTCTATCTCTTTTCTACTGGCCCGATGTCTCCGCTGCGCGGCCCGTAAAATTCCTCTGGAAACTGGAGCAGGTGTGTGACAGCGAATGGCATCACCTGTCCCTCAGTGTCCAGTTCCCCTCTGTGACACTGTACGTGGACGGAGTCACCTTCGACCCCGCCCTCATCCACGACAACGGAGCCATACCCAACCCTGCCCCACGACAGCGACTGGTCATTGGCGCCTGCTGGGAGACAGAAGATAAACAGAAGGACATCCTTAACAACACCATCCCTGAGGGGAAAGACACAGGGAAGTATGTGGGTGGTTACCGTGGCTTGTTGTCAGGAGTAACGGTGCGGCCAGGGAGTGTGGAGCCTCACAGTGTGGTGGAGTGTCTGTACGCCTGCAGGGAGGGGCTGGACTTTGGGGACCTGGAGACCTTGGGCTCAGGCATGAAGGTGCATGTGAACCCCAGTCAGTCTGTGCTGGTTCTAGAGGGTGATGACATTGAGAGCTTCAACAGGGCCGTGCAACAGGTCACCTACAGGAACTCTCTCCGCTTCGCCACCCCTGGAGTCAGGCCACTCAAACTGACCACCTcactcagGTGTTTCAATGAGGAGAGTTGTCTTACGCTCAGGCAGTTGGAGGGCTACCTGGTGGTCCTTCAGCCCGATGCCCCTCAGATCTCCCTGTCTGGGGTCGGCCCCCACCTGGCCCGCCCCGCGCCTGAATTTGAGGGCCCCCGTGGTGTACCCCTCTTCCCGGAGCTGAGGATCGTGTGCTCCCTGTCTCATGCTGTTAACACAGCCGCTCAGGgcatggagggaggagCTCTGATGTCAGACGCCGTGGCCCACACTCTGGACGGCTGTGAGGTCCAGCCCCTGGGGGAGGAGCTAAACCCAGAGAGGGAGGAGCTCCTGGTGGACATGGATGCCCTGAGAGAGAGGGGTCTGGAGATAATCAACACCACTGCTTACATCGCCATCACAGgagCTGAGTCCATCTCCGTGTATGAGGATGTCCTTCGGTCCGTCCGTTACCGGCTGGCTAAAGGCTCGGCCCGCTTTGAGAGGCGGTTCCGTCTGTCCTGCTCCGAGATGAATGGCAGATACACCAGCAACGAGCTCACACTGGAGGTGAACTTCCTGCACTCCCTGGATAGTCTGTACCACCCGTCTCACCTCCTGGCCTCCCAGCAGCAGTTTCTTCACCCATCTCACCACTCTGGGGAGCTGAGTGGACACACCCTGCCTAACCCCCACCGCAACTCGGTGGTGCCAGGAGCGGCCACAGTCATCATCATGGTGTGCGTGGGCTTCCTGGTTGTCATGGTGATCCTGGGAGTGTTTCGAATCCGCTCCATCCACCGCCGTGGCGAGGGCACCGGGGGAGGGTCTAAGGAGGATAGCGGCCAATGGGATGACTCTGCCCTCACCATCATCGTCAACCCCATGGAGTCCTATGAGTCTCGTATGGGCATCTCAGCTGACACCGaaggtgagggggaggaggacgaggaagtGGTGGAGTCACCCGATGACGCCAACGACGACCAGCGAATCATCATCAAGAAAGAGGGCAGAGACGGCAACCCCCGTCGCTACTAAGCcaatcgtctctctctctctggaagcaCTCATTTCCATGGAAACCACAAAACGGCTCGCCACTCACCTCAAAGCGTTTAAATATCGAAAACTGCTGACACCTCTAGTCTATGGAATGTAACAGTACAATAACGCACACTGTATTTCcgcaacaccacaacaccattaGTGGTCTATAGCCAATAACAGGGCATTGAATCTTTCACCACGTAAATGTTCTACggcacaatatatacagtatactctaACCGCCTGaccaaaacaaccaacaaaaatTGTATGTGGTGCACTAATTCCTAACTCACAGGGAATTGACATTGTCCTGGAAGTCTGTGTGAGACAGGCTGGACCGAGGCTACATAACTTAGTTGTGAAGTTAGGATTGTATATGTTTTACTATCTCTATATCACACTTCAGAGACCTTTGCCCACCACACAAAATGAATATTGAAGCAATCGATTCACACAAAGCCTTGTGTAGGCTCTTCACATATAGACACAAACCCTGATCCTGACGCTATCCCACACACCTCTAGATTTAATCTAGTTGTCTTTTTGCtgcacaatctctctctctcgctctttctctctctatacattCCTCAACTTCCAaaaatatgcccccccccccctcagatctGACTCCAGCTCAGTTCCACATTCATAGTAACCTTAATATGGAAAAACATACAATTATAGGGTTCTAGCTGATTTTTACACACTATGTACGATGTGCTTCACAATACTGTATGTGATGTGCTAAATTAGATCAAATAAATTGTCCACGCAAAAGCGTACATTTTCAGAACTTTCCTTTTGTCAGGGTAGACTTTTAAACGTTAAATCGTATTGCTTGGTAGAACCCTTTCATTGTAAGGTTTTGCAAGACAACCAAACAGGCTGATGATAAGGGCATAGAGTAACCTCTGACCCTCACCACAACCCCAGTGACTCGACTGAgcgccccccccccacccacacacacacaccattgcacACTCACCACCCACCGCTCTCGTAACAATCTCACGACAAAGACACACCCGCGCCACAACACCTGCTGTATCCAGAATGTCAGCTCAGCTTGGGCAGTTTTGATTGTATTACATTTTCTGTACATacaattattgttattattattattattgcagtCAACGCTTGCTCTCTGTCTGTACTCTTAAAGAGGGAGCTGCATATACATATTATTTATTACCAATTACACTGTTTTATCATTTGACCAGCTGTTGTATATTTTTAAGGTTACACCATCAGAATACGgagtactaataataataataataatagtagtagtagtaataaggATGATGATTCCTGACTTGATGAGTGTATACATTCGTGTGTTGAATTGTTGTAATTTAAAATCGTGTTCATATCTGAATCACAGTAAATGGAGGGAACATTGGTAAATAGCTActctgtcacctctctctctcattccttcctTCTTTCACACCTTAGAATATTCTCAAATCGTTCTCTCTTCCCCAGCTCCACTTTCCCTCTTGTCTTTTTGTTTTCGTGCCAGTCCCCACCATCTCTTTGGTCCACCTCCCTACACCCCTCCCTCACTTCCCCCCTCTGTGTttattgctgtctgtctgtgtgtcaatGTGCAGTGATAAACCTGTCAGTAAATAAAGCCTGTTGTTTTTCAGTGTAATATTATGGAAAACAAATTGCATTAATTActtatattattactattgggACATTAACTTTAATTATTGATACAATGACAACATGGATTATGAAGATTATTGTTATTGATAACTGTCTGAAAACATTTAAAAGTTCATAATAAAACACTCTGATGAGGTCTAAA
>XM_021595745.2
agtgcaATTTGGCAGGGAGCTAGAATtggagctgagaggagagaggacgcagTGTGGGCGGGTTAAGAAACACGGAGAGGGAGGGGACGTCAGCGTTATATTCCCATCGTTTTTACCCCTTCATACGACGTCTGCCGAAAACAAGGACATCGGTATTGAGATTCTATCCGTTCGTATCACTGTCTTGCGTCAAACTGAGGCGTACACATTTGAGCATCTTCAAGAGATCTGTGTATGAAATCCCGATACCTGCGCTTTAGTTTTTTTTGCGTCGGAGGATAGCTGAGCTGCAAAAGCGCGGATGCTACGAGGGTAGCGTTGGGTACCAAAACACCTCACTCACCACGaTGGACAGAATGagttgtctctccttcctcctcctttgCTTGACTTCGGTTGCCAATGGCAACAAAGCCAATAAGCACAAGCCATGGATCGAGACGGAGTACCAGGGTATTGTCATGGAGAACGACAATACCGTTCTTCTCAACCCACCACTGTTCGCCCTGGATAAAGACGCTCCACTGCACTACGCAGgtgAGATCTGTGGCTTCCGGGTGCACAATGGGCCCTCGGGATCCAGTTCGGTCCAGTTTGAGGCGGTGGTTCTGGACCGCTCGACAGGGGAGGGCCTGGTCCGCTCTAAAGAGCCATTGGACTGTGAGAGCCAGCGGGAGCACAGCTTCACCATCCAGGCCTATGACTGTGGAGAGGGCCCCGATGGAGCCAACAGCAAGAAGTCCCACAAggCCACGGTGCATGTACGTGTGAACGACGTAAACGAGTTCTCCCCAGTGTTCGTGGAGCGTCGCTACGAGGCCTCAGTCCCAGAAGGCCGTCTGTTCGACCACATCGTGCGCGTTGAGGCCCTCGACGCAGACTGCTCCCCGCAGTACAGCCAGATCTGCTTCTACGACATCATCACCCCCAACGTTCCCTTTGTCATCGATAACGATGGTAACATTAAGAACACAGAGCCATTGGATTCGAAGCGCCAGCGTGTCCACACCTTCTGGGTGACCGCGTTCGACTGTGGCAAGAACCGAGCTCAGGCCGACGCCCAGGTCGTCGTCACGGTCAAACCGTCCTGCAAACCCGGCTGGATCGGCTGGTCGAAGCGGGTGGAGTATACCCCCGGGTCAGGCAGCATTCCCCTGTTCCCCAGTTTGCACCTGGAGACCTGCGAAGAGACTGTGTGGAACATCCAGGCCACCGTAGAGCTGCAGACTGGCCATATTGGGAAGGGCTGTGACAGGGACAGCTACTCAGACCGATCAGTGCGCAGACTCTGTGGTGCTGTGAGAGGTGAAGTGGACTTACTCCCGCCCCCGTCCCCAGCAGCCAATTGGACCTCAGCCTTGCCCACCCTCCCTTCTTCTGATTCATCCCTGGTGTTCTCCTTCAATGGCTCCACCCATGTTGCCATGGTACCCGACTCTATTGCCGCGGCCGTATCCGGAGACCATTTCACCCTCCAGCTGTGGATGAGAAGGGGTGGAATCAACACCCAGCCTCCGACTAATCAGGCCAGAGGAAACCGCAGGGAGGAGGAGACTATCGTCTGCAGTACCGTCAAGAATGaCGACTCCTTCTCCCACTACTCTCTCTCCGTTCACGGCTGCCGTCTATCTCTTTTCTACTGGCCCGATGTCTCCGCTGCGCGGCCCGTAAAATTCCTCTGGAAACTGGAGCAGGTGTGTGACAGCGAATGGCATCACCTGTCCCTCAGTGTCCAGTTCCCCTCTGTGACACTGTACGTGGACGGAGTCACCTTCGACCCCGCCCTCATCCACGACAACGGAGCCATACCCAACCCTGCCCCACGACAGCGACTGGTCATTGGCGCCTGCTGGGAGACAGAAGATAAACAGAAGGACATCCTTAACAACACCATCCCTGAGGGGAAAGACACAGGGAAGTATGTGGGTGGTTACCGTGGCTTGTTGTCAGGAGTAACGGTGCGGCCAGGGAGTGTGGAGCCTCACAGTGTGGTGGAGTGTCTGTACGCCTGCAGGGAGGGGCTGGACTTTGGGGACCTGGAGACCTTGGGCTCAGGCATGAAGGTGCATGTGAACCCCAGTCAGTCTGTGCTGGTTCTAGAGGGTGATGACATTGAGAGCTTCAACAGGGCCGTGCAACAGGTCACCTACAGGAACTCTCTCCGCTTCGCCACCCCTGGAGTCAGGCCACTCAAACTGACCACCTcactcagGTGTTTCAATGAGGAGAGTTGTCTTACGCTCAGGCAGTTGGAGGGCTACCTGGTGGTCCTTCAGCCCGATGCCCCTCAGATCTCCCTGTCTGGGGTCGGCCCCCACCTGGCCCGCCCCGCGCCTGAATTTGAGGGCCCCCGTGGTGTACCCCTCTTCCCGGAGCTGAGGATCGTGTGCTCCCTGTCTCATGCTGTTAACACAGCCGCTCAGGgcatggagggaggagCTCTGATGTCAGACGCCGTGGCCCACACTCTGGACGGCTGTGAGGTCCAGCCCCTGGGGGAGGAGCTAAACCCAGAGAGGGAGGAGCTCCTGGTGGACATGGATGCCCTGAGAGAGAGGGGTCTGGAGATAATCAACACCACTGCTTACATCGCCATCACAGgagCTGAGTCCATCTCCGTGTATGAGGATGTCCTTCGGTCCGTCCGTTACCGGCTGGCTAAAGGCTCGGCCCGCTTTGAGAGGCGGTTCCGTCTGTCCTGCTCCGAGATGAATGGCAGATACACCAGCAACGAGCTCACACTGGAGGTGAACTTCCTGCACTCCCTGGATAGTCTGTACCACCCGTCTCACCTCCTGGCCTCCCAGCAGCAGTTTCTTCACCCATCTCACCACTCTGGGGAGCTGAGTGGACACACCCTGCCTAACCCCCACCGCAACTCGGTGGTGCCAGGAGCGGCCACAGTCATCATCATGGTGTGCGTGGGCTTCCTGGTTGTCATGGTGATCCTGGGAGTGTTTCGAATCCGCTCCATCCACCGCCGTGGCGAGGGCACCGGGGGAGGGTCTAAGGAGGATAGCGGCCAATGGGATGACTCTGCCCTCACCATCATCGTCAACCCCATGGAGTCCTATGAGTCTCGTATGGGCATCTCAGCTGACACCGaaggtgagggggaggaggacgaggaagtGGTGGAGTCACCCGATGACGCCAACGACGACCAGCGAATCATCATCAAGAAAGAGGGCAGAGACGGCAACCCCCGTCGCTACTAAGCcaatcgtctctctctctctggaagcaCTCATTTCCATGGAAACCACAAAACGGCTCGCCACTCACCTCAAAGCGTTTAAATATCGAAAACTGCTGACACCTCTAGTCTATGGAATGTAACAGTACAATAACGCACACTGTATTTCcgcaacaccacaacaccattaGTGGTCTATAGCCAATAACAGGGCATTGAATCTTTCACCACGTAAATGTTCTACggcacaatatatacagtatactctaACCGCCTGaccaaaacaaccaacaaaaatTGTATGTGGTGCACTAATTCCTAACTCACAGGGAATTGACATTGTCCTGGAAGTCTGTGTGAGACAGGCTGGACCGAGGCTACATAACTTAGTTGTGAAGTTAGGATTGTATATGTTTTACTATCTCTATATCACACTTCAGAGACCTTTGCCCACCACACAAAATGAATATTGAAGCAATCGATTCACACAAAGCCTTGTGTAGGCTCTTCACATATAGACACAAACCCTGATCCTGACGCTATCCCACACACCTCTAGATTTAATCTAGTTGTCTTTTTGCtgcacaatctctctctctcgctctttctctctctatacattCCTCAACTTCCAaaaatatgcccccccccccctcagatctGACTCCAGCTCAGTTCCACATTCATAGTAACCTTAATATGGAAAAACATACAATTATAGGGTTCTAGCTGATTTTTACACACTATGTACGATGTGCTTCACAATACTGTATGTGATGTGCTAAATTAGATCAAATAAATTGTCCACGCAAAAGCGTACATTTTCAGAACTTTCCTTTTGTCAGGGTAGACTTTTAAACGTTAAATCGTATTGCTTGGTAGAACCCTTTCATTGTAAGGTTTTGCAAGACAACCAAACAGGCTGATGATAAGGGCATAGAGTAACCTCTGACCCTCACCACAACCCCAGTGACTCGACTGAgcgccccccccccacccacacacacacaccattgcacACTCACCACCCACCGCTCTCGTAACAATCTCACGACAAAGACACACCCGCGCCACAACACCTGCTGTATCCAGAATGTCAGCTCAGCTTGGGCAGTTTTGATTGTATTACATTTTCTGTACATacaattattgttattattattattattgcagtCAACGCTTGCTCTCTGTCTGTACTCTTAAAGAGGGAGCTGCATATACATATTATTTATTACCAATTACACTGTTTTATCATTTGACCAGCTGTTGTATATTTTTAAGGTTACACCATCAGAATACGgagtactaataataataataataatagtagtagtagtaataaggATGATGATTCCTGACTTGATGAGTGTATACATTCGTGTGTTGAATTGTTGTAATTTAAAATCGTGTTCATATCTGAATCACAGTAAATGGAGGGAACATTGGTAAATAGCTActctgtcacctctctctctcattccttcctTCTTTCACACCTTAGAATATTCTCAAATCGTTCTCTCTTCCCCAGCTCCACTTTCCCTCTTGTCTTTTTGTTTTCGTGCCAGTCCCCACCATCTCTTTGGTCCACCTCCCTACACCCCTCCCTCACTTCCCCCCTCTGTGTttattgctgtctgtctgtgtgtcaatGTGCAGTGATAAACCTGTCAGTAAATAAAGCCTGTTGTTTTTCAGTGTAATATTATGGAAAACAAATTGCATTAATTActtatattattactattgggACATTAACTTTAATTATTGATACAATGACAACATGGATTATGAAGATTATTGTTATTGATAACTGTCTGAAAACATTTAAAAGTTCATAATAAAACACTCTGATGAGGTCTAAA

Function

NR:

description
calsyntenin-3-like isoform X2

GO: NA

KEGG:

id description
K22661 CLSTN3; calsyntenin 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021595732.2 False 5073 mRNA 0.51 19 30627852 30667510
XM_021595745.2 True 5061 mRNA 0.51 19 30627852 30667510

Neighbor

gene id symbol gene type direction distance location
LOC110517876 LOC106583352 coding upstream 773 30615198 ~ 30627079 (+)
LOC118964363 NA coding upstream 15405 30612392 ~ 30612447 (+)
LOC110517766 LOC106605102 coding upstream 51644 30548571 ~ 30576208 (+)
LOC110504017 LOC106583301 coding upstream 215546 30375575 ~ 30412306 (+)
LOC110517739 med18 coding upstream 260415 30363161 ~ 30367437 (+)
pex5 LOC106583355 coding downstream 385 30667895 ~ 30683839 (+)
LOC110517966 LOC106583386 coding downstream 17984 30685494 ~ 30697207 (+)
LOC110518030 LOC106583425 coding downstream 58496 30726006 ~ 30742291 (+)
cd4-2.2 LOC100136286 coding downstream 75511 30743021 ~ 30749644 (+)
cd4-1 LOC100136285 coding downstream 83877 30751387 ~ 30774955 (+)
G244648 NA non-coding upstream 18082 30606965 ~ 30609770 (+)
G244707 NA non-coding upstream 53365 30573578 ~ 30574487 (+)
G244668 NA non-coding upstream 113558 30514066 ~ 30514294 (+)
G244660 NA non-coding upstream 122390 30505059 ~ 30505462 (+)
G244658 NA non-coding upstream 123564 30504046 ~ 30504288 (+)
G244768 NA non-coding downstream 30391 30697901 ~ 30698160 (+)
G244751 NA non-coding downstream 38545 30706055 ~ 30710103 (+)
G244779 NA non-coding downstream 44436 30711946 ~ 30712251 (+)
G244783 NA non-coding downstream 53020 30720530 ~ 30796272 (+)
G244831 NA non-coding downstream 150198 30817708 ~ 30824094 (+)
G244292 LOC106583212 other upstream 490288 30132399 ~ 30137564 (+)
G243679 LOC107756720 other upstream 937056 29668379 ~ 29690796 (+)
LOC110517275 LOC106583018 other upstream 1593138 28995823 ~ 29034924 (+)
LOC110516993 LOC106605183 other upstream 2878126 27725189 ~ 27749972 (+)
LOC110516984 NA other upstream 2904058 27705985 ~ 27723794 (+)
G244851 cep85 other downstream 198056 30865566 ~ 30874608 (+)
LOC110518244 LOC106583484 other downstream 250521 30918022 ~ 30924289 (+)
LOC110518266 LOC106583495 other downstream 277228 30939321 ~ 31127608 (+)
G244956 NA other downstream 369007 31036517 ~ 31037252 (+)
G244991 NA other downstream 419259 31086769 ~ 31087255 (+)

Expression


Co-expression Network