p3h3 (LOC106583419)


Basic Information

Item Value
gene id p3h3
gene name LOC106583419
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 30713906 ~ 30725406 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021595796.2
CCTTCCCCTACTTTCCTCTGGccctgtccctccccctctccttctcaaaaATAACTACGGCGTACCATGGCGCTTTGCGCAAATCACAACTCTGTCTACGTGGCGCTGCACATCTCTCTTATTCACTCTCTTTTCTCATTCTTCTATTTAACCTCTCCTGTTGCAGGCATCGGATCTTCTGCAGGATCTGCGTCCGGACTCATAACCTCTTACGATGTTTTGTATTATACCGGGGTCCGTGCATACTTTAGCGAGGAGTGGGAGAAAGCTGCGGAGCTGCTCGAAAAGTCGATGTCTACCCGGGAGGCTCTATTTCGTACCCGACGGCAGTGCCATAAAGAATGTGTGCCAGCGGGATATGACAGGCTCCCAAAACTGGacACAGAGAAAGGGAATGTGTGGGACCTATGGGCAGTGGACTGGGTCCAGCGGCGGGCTGAGTGTGTGCGGTTCTGTTTGGGACGGGCTGTCACTCCTGCAGGACAGCTTCCCGTGTCTGCCGACATTGAGTATGAGTTCAGCACCCGGAACCCCTATAACTTCCTGCAGGTGGTCTACTGGAAGCTAGGGAAAGTACAGAAGGCAGCGTCAGCAGCCCACACGTTCTTCGTGGCCAACCCCAGTCACCTGGAGATGAGGAACAACATTGAGAAGTATAGACGGATGGAGGGAGTAACAGAGGACGCATTccaggatagagagatggagacggagaaACACTGGGCCCTGTACGACTCTGCCCTCACCTCTGAGGCCTCCTCTGATTGGACGCACGCCGTGGAGAAATGGATGGAGTGTGTGAACGagacactgagacagactgaTGAGTGCAGGGCGCAGTGTGAGGTCGCCTCACAGCGGCTCcctgagaacagaggagaggacggTATGGACGGGGTGTTTGAGAAGGCTGCAGcactctccctctccctcctgtcctgccaGCAGGCCTGTGTGACTCAGGTGGCGACACGACCCGGAAGGATTTCAGCCCAGGAGGACTTCCTACCCACACAGCTGGAGCATCTACACATCGCACAGTTCAAAGCGGGCGATCTAGGAGGAGCGGTGCGTTCTCTGCGGTCTCTCCTCCTGTTCTACCCCTCAGACAAAGACTCCCTCAGTAACCTGGAGCTCTACACAGAGACACTGGGGGGTGACACTGAGGCACATGGGACAAAGCCCTCCCAGGAGATAGCCAGGTATGTGAGCCGCTCACTGCAGGAGAAAAAGCTACTCTACTTCGGAATGGAAAACCTCAACTTTAATTTCACCGACCCGGATCTCTGGACTCCAGAGGAGGTTGTTCCTGAGTTGCTGAGAGACACATGGAGAGCAGAAAAGGAAGTGCTGAATGAGAAATTGAAGgcgggagagaaagaggtggagatgGACGATAGTGGGTTCTACGCCGGGGGTCCCGTTCCTCAGGTTGGTGTCACCATCAGCATGGACGACAATTCTTTAAATGGAACTAATCGCGTCGTGCTGGACGGAGTTCTAGATCAGAAGGAATGCAACACAGTGCTGCGCCTAGCGACCGCAGCTGCATCCGCTGGGGACGGTTACCGGGGGCGACGGTCCCCACACACCCCCCATGAGAAGTTTGAGGGCCTGACTGTCCTCAGAGCTGTCAAGTTGGCTCAGGACGGCATGGTGAACCAATCAGACGCTAAGCTGCTGcatgagatgggggagagggtgagAACCCTCCTGCACTCCTACTTCAGGAGCCCCTCAGGACTCCATTTCTCCTACACACATCTAGTGTGCCGCAGCGCCATCACAGgggaccAAGAGGGGAGACTGGACCTGTCTCACCCTGTTCATGTGGACAACTGTCTACTGGAACCTGAGACCAGACAGTGCTGGAGAGAACCACCTGCCTTTACACACAGAGacctgagCGCTGTGCTCTATCTGAACGATGACTTTGACGGTGGGGAGCTCTTCTTCACAGACAGGGATGCCAAGACTGTCACAGCCCGGGTGAAACCCACCTGTGGTCGACTGGTGGGGTTCTCTTCCGGTCCGGTCAACCCCCATGGTGTGACCGCGGTGACCGCTGGCCGAAGGTGTGCACTGGCCCTTTGGTTCACCAAGGAGAAGCACCACAGGGATATGgagagggaggaggctgAGTCCCTGTGGGCTGCGGATGGACAGAGTGTGATGAAAGGAGGAGAAGtaaaagaggagggaagagatggCACCGCTGCCCCTGCTCGGAGTGGTAGAAGCGGAAGCCAGTCGTCGAGGAGTAGAGGGAGGGGCAGGGTGACAGGGGGAAAGGACGAGCTGTGATGAGCTGCTGTGATGGATTTAAAGACTGAACCACCCACGCTGAACAGCGGGGTAGTCCTGTTAACCTCCCCGTCCTACTTGGTGGACCGTCCCGGTCCAGCCACCAGTCCCCTCTCCCAAAAGACCATAAACTATTCTCTATTTTTACACCAGGCTTTTCAATCCCTACCCAtgctctttcactttctctccccccccctctctctctctctctctctctctctctctccgagacCATTTGTGAAAGAAGGTATTTttgtctatctctctcgctctctttcgctccctCAGTCTTTCTCTTTGAGACGGtgttgtgtgattgtgtgtcttTCCACCCCCTCCATTGACAATCAGTCCATTTGTGTTACAGTGTAGGCCTTAGTGTTTGCTATGTAATGACCGTTACATACCTGCTGGAGAAAAGTAAAAGGAATTGAATAAAAGTTATTCAAAAtggtggagagggagtgagaatggAAACAAGCCCTTGTTGCAGATATAGAAGAAAAAAGCCATAGCTGAGGTGCCTCTGAAGTGGCATCTCCCCTCTGTCGGGAAGAGGTataagtgggagagagagaatttagAAACCCCCTTTATTGGGTCAATGCCGTACATTACACACATGTACATTAAGAACATGACATATTAAACATCGACATCCACAAGAGCTCTCATACACAACCCTGTAGAAGGTCAACTCCAAACCTCCTGCATGATCAACTGTTTAACCCTTTACACCCATACCCATACCCATTCGCGGGTTGAAAAAGGCAGATTTAGAAcatagtggctgtacagtaacaggcttgtacagtaacatgctctcCATGACGTTAGAGCTCTGGCCCTGCGCGTCACggcgctgtatgggttttgactgactgcCGTTTTGAACTTGAGCACCAGCGCTCGACAAAAGAAGTTGCCCTCCCGCTAATTGGGCCACCTTTGCAAATTGTTTTGTTGTCCGAGTGAGCGAAATGCTGTACATTTTACGGTGACTTGATGTATTTGAAAGATGcgacgttgaggattataataaatacagcTTTGAAGTCATA

Function

NR:

description
prolyl 3-hydroxylase 3-like

GO: NA

KEGG:

id description
K22460 P3H3; procollagen-proline 3-dioxygenase 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021595796.2 True 3368 mRNA 0.53 16 30713906 30725406

Neighbor

gene id symbol gene type direction distance location
gnb3a LOC106583400 coding downstream 3710 30697807 ~ 30710196 (-)
LOC110517847 tpi1b coding downstream 102107 30606964 ~ 30611799 (-)
LOC118951153 LOC106605099 coding downstream 120079 30592103 ~ 30593827 (-)
LOC110517778 LOC106583350 coding downstream 122821 30577798 ~ 30591085 (-)
LOC110517711 LOC106583306 coding downstream 352136 30343960 ~ 30361770 (-)
LOC110518094 LOC106583440 coding upstream 74891 30800297 ~ 30811533 (-)
LOC118951441 NA coding upstream 87893 30813299 ~ 30818102 (-)
LOC110518140 cep85 coding upstream 135608 30861014 ~ 30881486 (-)
LOC110518189 NA coding upstream 156262 30881668 ~ 30883558 (-)
LOC110518255 nr0b2 coding upstream 205255 30930661 ~ 30933160 (-)
G245279 NA non-coding downstream 1626 30712044 ~ 30712280 (-)
G245278 NA non-coding downstream 2508 30711154 ~ 30711398 (-)
G245188 LOC106605095 non-coding downstream 46396 30665203 ~ 30667510 (-)
G245219 NA non-coding downstream 60999 30642354 ~ 30652907 (-)
G245204 NA non-coding downstream 94306 30617895 ~ 30619600 (-)
G245308 NA non-coding upstream 52785 30778191 ~ 30780965 (-)
G245316 NA non-coding upstream 94119 30819525 ~ 30822509 (-)
G245249 NA non-coding upstream 109667 30835073 ~ 30838562 (-)
G245347 NA non-coding upstream 169569 30894975 ~ 30897112 (-)
G244393 LOC106583245 other downstream 496317 30211570 ~ 30217682 (-)
G244381 LOC106583245 other downstream 514136 30199232 ~ 30199770 (-)
G244379 NA other downstream 536498 30174013 ~ 30177408 (-)
G244338 NA other downstream 584692 30088843 ~ 30129214 (-)
LOC110517486 LOC106583166 other downstream 1255860 29456450 ~ 29458390 (-)
G245366 LOC106605077 other upstream 219547 30944953 ~ 30945843 (-)
LOC110518371 LOC106583543 other upstream 837139 31562384 ~ 31631107 (-)
G248239 LOC106605043 other upstream 2694023 33419429 ~ 33419707 (-)
G249485 LOC106584080 other upstream 3631869 34357275 ~ 34359451 (-)
G249978 NA other upstream 4164100 34889506 ~ 34889954 (-)

Expression


Co-expression Network