cd209 (cd209)


Basic Information

Item Value
gene id cd209
gene name cd209
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 30781946 ~ 30785741 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001124633.1
GCTAATAGGATACTGGGCAAACAATTTGTGGAACAGAATTGCAACTTTAACTTTATTTACAGTTAGTTACAAGGTTGGGAGATTGTGCAATAGTTGGTATTAGTAAGTTAACTCGTGATTGTAGTGAGAAGAGCTGGTGAAGAAACGAAACTTCAACCATGGAGGAGGTAGAGAACTATACCAGTCTACACGAGTTTACTGAGGATATATCCAGCAGAGGAAACAAGCCTATCCTCAACAACCAcaATGCCCAGGAGCTGAAGAGGGGGTCAGAGTGTCTCAGAGGTCAGACTGCCCTCTTTGTGCTGATTGGTCTATTGGCATCCATCTGTGCCAACATCGCTCTGAGCGTACTCTtgtttaGCAGGCCGTTACCCAGTGTACCCCTGGAGGCAGCATCTCTGACCCTGAAGCTGAACTCAGTTCGAGGACGATATGTCCGTCTCTGTGATGACTACTCCAAACTGGGCCAGAGCTGCTCAAAGACAGTAAGGAAGTGTAGGGAGTGTCCTGAGGGCTGGATTCATGTAGATGAGAAATGTTACTCCTTCAGCAATGACAAGATGGACTGGCCGAGCAGCAGAGACAGTTGTACTTCCCTGGGCAGCCACCTTACCATCCTGCACAGCAAGAAACAGCATGACGCTCTGGAAAAAGAGGCCCGGAGGATTGGCGGGTTTGACTACCACTTCTGGATTGGCCTATCagatagagagaaggaaggggattGGAGATGGgtggacaacacaacactgacaaACAAgTATTGGAATGAGTATAGCTCTGAGCCTGACAATCACCAGTCAGGAGGATCACATGGGGAAGACTGTGCCACCTTGGACAGCCATTCGCAGACCTGGTTTGACGTGCCGTGTGACCACATCTACAAACGCATTTGTCAGATGGATGCCATTCGGCTAGACTGAATCACAGGACTAAAACGAAGCCATGAACTTCCCGCTCATCTCGATCCGCCATCCACATATTCATGAACGATGGCAATGTTGTCTTAAATAGTTTATCCTTTTTCTGTCTTTCAAGCGATATGAGATGTTTTAGTGCAAATGAAAAGCGCTATAAAAGTGAAATCACAGTTTTTACTGGGAACTGAACTCGGTTATGGATCAGATTTATTCACCTACACTGCCAAGTGTGCGTATTACTTAGTATTTTCTCGGAAACCATAAAGCAAAATGGGACAGGAGAGGTTAAGAGAAGGACTAAGATATTGAACGTCAAGACGAGATGAATTATAGTTTTATGGTATATGTAGTTTCATGAAAAGTTCATTCCGTACTGAAAATAACAGATGCAAACATCTAGCAAATCTGGCACCTTCTGCAAGGAGGATTTAAATTCCTGCACTCAATTTAGTAAATCAGTTACTGCAATCAAGGAGGTAGATGCTCTAATCAACTCTGCTGCTTGCCAAACGGATTGCTGTGATACTTTTGAGCAATCTGCATgctttttgttttgtgtgtgaccTGTACAGAAATCTCCAAAATGTACTGTATTGCTGCACTAACCATGAACATGTATTCCTGAGAGTTAATGTGTCAATAAAAACTGTATTTTCAAATGAA

Function

symbol description
cd209 Acts upstream of or within T cell activation involved in immune response; adaptive immune response; and dendritic cell antigen processing and presentation. Located in cell surface. Is expressed in several structures, including heart; immune system; integument; liver; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in Coronavirus infectious disease; aspergillosis; dengue disease (multiple); human immunodeficiency virus infectious disease (multiple); and tuberculosis (multiple). Orthologous to several human genes including CLEC6A (C-type lectin domain containing 6A); CLEC4A (C-type lectin domain family 4 member A); and CLEC4C (C-type lectin domain family 4 member C).

NR:

description
CD209 molecule

GO:

id name namespace
GO:0030246 carbohydrate binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001124633.1 True 1586 mRNA 0.44 6 30781946 30785741

Neighbor

gene id symbol gene type direction distance location
cd4-1 LOC100136285 coding upstream 6991 30751387 ~ 30774955 (+)
cd4-2.2 LOC100136286 coding upstream 32302 30743021 ~ 30749644 (+)
LOC110518030 LOC106583425 coding upstream 39655 30726006 ~ 30742291 (+)
LOC110517966 LOC106583386 coding upstream 84739 30685494 ~ 30697207 (+)
pex5 LOC106583355 coding upstream 98107 30667895 ~ 30683839 (+)
LOC110518073 csn7a coding downstream 1439 30787180 ~ 30798358 (+)
LOC118944663 ubxn11 coding downstream 54915 30840656 ~ 30860491 (+)
LOC110518162 LOC106583467 coding downstream 96361 30882102 ~ 30897117 (+)
LOC110518231 LOC106584656 coding downstream 112337 30898078 ~ 30902252 (+)
LOC110518221 LOC106584664 coding downstream 116654 30902395 ~ 30907005 (+)
G244779 NA non-coding upstream 69695 30711946 ~ 30712251 (+)
G244751 NA non-coding upstream 71843 30706055 ~ 30710103 (+)
G244768 NA non-coding upstream 83786 30697901 ~ 30698160 (+)
G244648 NA non-coding upstream 172176 30606965 ~ 30609770 (+)
G244707 NA non-coding upstream 207459 30573578 ~ 30574487 (+)
G244831 NA non-coding downstream 31967 30817708 ~ 30824094 (+)
G244838 NA non-coding downstream 54524 30840265 ~ 30844031 (+)
G244875 NA non-coding downstream 139785 30925526 ~ 30926079 (+)
G244691 NA other upstream 149413 30631770 ~ 30632533 (+)
G244292 LOC106583212 other upstream 644382 30132399 ~ 30137564 (+)
G243679 LOC107756720 other upstream 1091150 29668379 ~ 29690796 (+)
LOC110517275 LOC106583018 other upstream 1747232 28995823 ~ 29034924 (+)
LOC110516993 LOC106605183 other upstream 3032220 27725189 ~ 27749972 (+)
G244851 cep85 other downstream 79825 30865566 ~ 30874608 (+)
LOC110518244 LOC106583484 other downstream 132290 30918022 ~ 30924289 (+)
LOC110518266 LOC106583495 other downstream 158997 30939321 ~ 31127608 (+)
G244956 NA other downstream 250776 31036517 ~ 31037252 (+)
G244991 NA other downstream 301028 31086769 ~ 31087255 (+)

Expression


Co-expression Network