LOC110518073 (csn7a)


Basic Information

Item Value
gene id LOC110518073
gene name csn7a
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 30787180 ~ 30798358 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021595817.2
GTTCAGTCCCTTGTCAGTCAAGAcaaacactcccctcctccttttcACGTTTCGCCCAATGAGCAGTGATGTTCTCCTTTGTTGTTAAACGTGCACTGACGGCGGAACTGAGGGATTCGGGGGACAGGCTATCAACTTGAGTTAGCTTACCAATAAGatggaggtagagcagctcctctctctctcaggcccgGCGTTGGCCCAGGCAATAAGTTCTCTGCTGGAGACACCAGGCCTCTACGTGTTCTCAGACATCCTTGAGCTGCCCAACGTCagagagCTGGAGACAGGCCCGCACGCTCCAGTGTATCAGCTACTCAACCTCTTCGCCTATGGAACCTACTGTGACTATAAAGAGAGGGCAGCCTCTCTCCCAGAGTTGACCCCAGCCCAGAGGAACAAACTCCGTCACCTCTCCATCATCAGTCTGGCATCTAATCTCAAGTGCCTGCCCTACTCCctgctcctgcagcagctggagCTGAAGAACGTGCGGGAGCTGGAGGACCTGCTGATTGAGGCGGTCTACTGTGACATCATTCAGGGCAAGCTGGACCAGAGGAACCAGCAGGTGGAGGTGGACTGCAGCGTGGGCCGAGACCTGGGGCCCAATGAGCTGCCCAACATAGCCAACACACTACAGGAGTGGTGTTCAGGGTGTGAGGCGGTCCTGTGTGGGATCGAGGAGCAGGTAACCAGAGCCAACCAATACAGAGAGAGCCAGCTGAAGGTCAAAGTTCAGGTGGAGACAGAGgtgtcaAACCTCCAGAAAACGCTAAAGGCCAGCTCCGCCTCACCGTCGTCCGGCCCCGCCGCCGCTGGAGCCGCATCCAATCAGGATGCAGACCAGCCGGCCGAGCCACGAGACCCCGCCTCCTCTCAGGAACCACGGCAACCGGGCAAGAAGAGTTCAAAGGTCAAAGGGCTCCGTGGAAGTGGGAAGATCTGGTCCAAGTCCAACTGAAGGCAGAGAGACCCCGCTGATCCACTGTCAGATGCACGGACTGAGACACAGGTTGACAGACACATAGACCCACACAGACTCATAGACCGATAATGTGACCcatgcacagacagacactgagattaacacacacgttcacacatcCTTGCAcgcacggaaacacacacacacatatatacagacaCCGAGTCCGACAGACACACTGTCAGTGAGTGACCGACTTGACACCCATTCTGATAGGTGTGTACACACAACCAGACAGACGGACTATCTGCACTGTGTATATACACAGACCCAAACCCATTCTAAcgtgtacacagagagagagagacagagaataatCTGCTCTGGGCAGAGCTTTGCTGCTGTCGGGAGAAGCAGCGCCACGGGCACTGAAACCGAATGTGTGTATTTGATGTATTCTATTGTGTTacactttttgtttgtttgtatttttttttctgcTGAGGATTGAGTTGAGACGTGTATAAAATCAGGATATGAATTGTTGGTAATAAATTGAACCCCCTCTATTCATTTA
>XM_021595822.2
actcccctcctccttttcACGTTTCGCCCAATGAGCAGTGATGTTCTCCTTTGTTGTTAAACGTGCACTGACGGCGGAACTGAGGGATTCGGGGGACAGGCTATCAACTTGAGTTAGCTTACCAATAAGTTCTCTCTCTTGCCTTCTGTCTTTTTTGCTAGTTCTCTCTCttgcacactctctctcactctctgtctctctatctctcagatggaggtagagcagctcctctctctctcaggcccgGCGTTGGCCCAGGCAATAAGTTCTCTGCTGGAGACACCAGGCCTCTACGTGTTCTCAGACATCCTTGAGCTGCCCAACGTCagagagCTGGAGACAGGCCCGCACGCTCCAGTGTATCAGCTACTCAACCTCTTCGCCTATGGAACCTACTGTGACTATAAAGAGAGGGCAGCCTCTCTCCCAGAGTTGACCCCAGCCCAGAGGAACAAACTCCGTCACCTCTCCATCATCAGTCTGGCATCTAATCTCAAGTGCCTGCCCTACTCCctgctcctgcagcagctggagCTGAAGAACGTGCGGGAGCTGGAGGACCTGCTGATTGAGGCGGTCTACTGTGACATCATTCAGGGCAAGCTGGACCAGAGGAACCAGCAGGTGGAGGTGGACTGCAGCGTGGGCCGAGACCTGGGGCCCAATGAGCTGCCCAACATAGCCAACACACTACAGGAGTGGTGTTCAGGGTGTGAGGCGGTCCTGTGTGGGATCGAGGAGCAGGTAACCAGAGCCAACCAATACAGAGAGAGCCAGCTGAAGGTCAAAGTTCAGGTGGAGACAGAGgtgtcaAACCTCCAGAAAACGCTAAAGGCCAGCTCCGCCTCACCGTCGTCCGGCCCCGCCGCCGCTGGAGCCGCATCCAATCAGGATGCAGACCAGCCGGCCGAGCCACGAGACCCCGCCTCCTCTCAGGAACCACGGCAACCGGGCAAGAAGAGTTCAAAGGTCAAAGGGCTCCGTGGAAGTGGGAAGATCTGGTCCAAGTCCAACTGAAGGCAGAGAGACCCCGCTGATCCACTGTCAGATGCACGGACTGAGACACAGGTTGACAGACACATAGACCCACACAGACTCATAGACCGATAATGTGACCcatgcacagacagacactgagattaacacacacgttcacacatcCTTGCAcgcacggaaacacacacacacatatatacagacaCCGAGTCCGACAGACACACTGTCAGTGAGTGACCGACTTGACACCCATTCTGATAGGTGTGTACACACAACCAGACAGACGGACTATCTGCACTGTGTATATACACAGACCCAAACCCATTCTAAcgtgtacacagagagagagagacagagaataatCTGCTCTGGGCAGAGCTTTGCTGCTGTCGGGAGAAGCAGCGCCACGGGCACTGAAACCGAATGTGTGTATTTGATGTATTCTATTGTGTTacactttttgtttgtttgtatttttttttctgcTGAGGATTGAGTTGAGACGTGTATAAAATCAGGATATGAATTGTTGGTAATAAATTGAACCCCCTCTATTCATTTA

Function

NR:

description
COP9 signalosome complex subunit 7a-like

GO:

id name namespace
GO:0008180 COP9 signalosome cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K12180 COPS7, CSN7; COP9 signalosome complex subunit 7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021595817.2 False 1505 mRNA 0.53 8 30787180 30798358
XM_021595822.2 True 1558 mRNA 0.53 8 30787208 30798358

Neighbor

gene id symbol gene type direction distance location
cd209 cd209 coding upstream 1439 30781946 ~ 30785741 (+)
cd4-1 LOC100136285 coding upstream 12225 30751387 ~ 30774955 (+)
cd4-2.2 LOC100136286 coding upstream 37536 30743021 ~ 30749644 (+)
LOC110518030 LOC106583425 coding upstream 44889 30726006 ~ 30742291 (+)
LOC110517966 LOC106583386 coding upstream 89973 30685494 ~ 30697207 (+)
LOC118944663 ubxn11 coding downstream 42298 30840656 ~ 30860491 (+)
LOC110518162 LOC106583467 coding downstream 83744 30882102 ~ 30897117 (+)
LOC110518231 LOC106584656 coding downstream 99720 30898078 ~ 30902252 (+)
LOC110518221 LOC106584664 coding downstream 104037 30902395 ~ 30907005 (+)
LOC110518244 LOC106583484 coding downstream 119664 30918022 ~ 30924289 (+)
G244779 NA non-coding upstream 74929 30711946 ~ 30712251 (+)
G244751 NA non-coding upstream 77077 30706055 ~ 30710103 (+)
G244768 NA non-coding upstream 89020 30697901 ~ 30698160 (+)
G244648 NA non-coding upstream 177410 30606965 ~ 30609770 (+)
G244707 NA non-coding upstream 212693 30573578 ~ 30574487 (+)
G244831 NA non-coding downstream 19350 30817708 ~ 30824094 (+)
G244838 NA non-coding downstream 41907 30840265 ~ 30844031 (+)
G244875 NA non-coding downstream 127168 30925526 ~ 30926079 (+)
G244691 NA other upstream 154647 30631770 ~ 30632533 (+)
G244292 LOC106583212 other upstream 649616 30132399 ~ 30137564 (+)
G243679 LOC107756720 other upstream 1096384 29668379 ~ 29690796 (+)
LOC110517275 LOC106583018 other upstream 1752466 28995823 ~ 29034924 (+)
LOC110516993 LOC106605183 other upstream 3037454 27725189 ~ 27749972 (+)
G244851 cep85 other downstream 67208 30865566 ~ 30874608 (+)
LOC110518266 LOC106583495 other downstream 146380 30939321 ~ 31127608 (+)
G244956 NA other downstream 238159 31036517 ~ 31037252 (+)
G244991 NA other downstream 288411 31086769 ~ 31087255 (+)

Expression


Co-expression Network